Wall clock time and date at job start Tue Mar 31 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31261 * 1 3 3 Si 1.86804 * 119.99657 * 2 1 4 4 H 1.48505 * 109.47150 * 274.99136 * 3 2 1 5 5 H 1.48503 * 109.47201 * 34.98995 * 3 2 1 6 6 H 1.48496 * 109.47193 * 154.99037 * 3 2 1 7 7 C 1.39070 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00094 * 201.61090 * 7 2 1 9 9 N 1.37107 * 120.00147 * 21.61443 * 7 2 1 10 10 C 1.35339 * 119.71436 * 40.06982 * 9 7 2 11 11 O 1.21721 * 121.28972 * 0.03148 * 10 9 7 12 12 C 1.46967 * 117.42216 * 180.25686 * 10 9 7 13 13 C 1.39375 * 121.91306 * 179.77666 * 12 10 9 14 14 C 1.37793 * 119.51550 * 179.97438 * 13 12 10 15 15 C 1.38871 * 120.57322 * 0.02562 * 14 13 12 16 16 C 1.37707 * 120.82965 * 359.95398 * 15 14 13 17 17 C 1.39637 * 119.68501 * 0.04264 * 16 15 14 18 18 N 1.35638 * 121.60575 * 179.97438 * 17 16 15 19 19 C 1.29825 * 121.62119 * 179.97438 * 18 17 16 20 20 C 1.50704 * 118.35055 * 179.97438 * 19 18 17 21 21 N 1.46901 * 109.46797 * 359.97438 * 20 19 18 22 22 C 1.47842 * 110.99849 * 68.77723 * 21 20 19 23 23 C 1.54913 * 104.79289 * 146.36295 * 22 21 20 24 24 C 1.55136 * 101.65511 * 322.92793 * 23 22 21 25 25 C 1.47443 * 110.99769 * 189.61819 * 21 20 19 26 26 H 1.09004 * 109.89150 * 117.17279 * 25 21 20 27 27 C 1.52999 * 109.89223 * 356.14929 * 25 21 20 28 28 O 1.42909 * 109.47058 * 294.88231 * 27 25 21 29 29 H 0.97000 * 120.00336 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.23985 * 359.97438 * 13 12 10 31 31 H 1.08008 * 119.70888 * 180.02562 * 14 13 12 32 32 H 1.08001 * 119.58520 * 179.97438 * 15 14 13 33 33 H 1.07991 * 120.15905 * 180.02562 * 16 15 14 34 34 H 1.09007 * 109.47271 * 240.00021 * 20 19 18 35 35 H 1.09004 * 109.47133 * 120.00109 * 20 19 18 36 36 H 1.09000 * 110.37026 * 265.18606 * 22 21 20 37 37 H 1.08993 * 110.37674 * 27.42109 * 22 21 20 38 38 H 1.09003 * 110.99204 * 81.02086 * 23 22 21 39 39 H 1.09003 * 110.98967 * 204.83531 * 23 22 21 40 40 H 1.09004 * 110.70613 * 277.27479 * 24 23 22 41 41 H 1.08999 * 110.71133 * 154.03901 * 24 23 22 42 42 H 1.08998 * 109.48007 * 174.88151 * 27 25 21 43 43 H 1.09008 * 109.47324 * 54.87824 * 27 25 21 44 44 H 0.96700 * 114.00168 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 2.3885 2.1074 -1.3948 5 1 1.5006 2.6200 0.8029 6 1 3.5928 1.4122 0.5919 7 6 2.0080 -1.2043 0.0005 8 1 3.0311 -1.2370 0.3450 9 7 1.3949 -2.3502 -0.4363 10 6 0.5846 -2.3064 -1.5195 11 8 0.3867 -1.2659 -2.1193 12 6 -0.0512 -3.5628 -1.9404 13 6 -0.9059 -3.6238 -3.0396 14 6 -1.4749 -4.8286 -3.3910 15 6 -1.2039 -5.9777 -2.6599 16 6 -0.3620 -5.9391 -1.5708 17 6 0.2271 -4.7303 -1.1946 18 7 1.0617 -4.6476 -0.1287 19 6 1.6099 -3.5239 0.2211 20 6 2.5252 -3.5163 1.4183 21 7 2.6114 -4.8720 1.9773 22 6 3.3342 -5.7785 1.0598 23 6 4.0883 -6.7625 1.9887 24 6 4.5054 -5.8324 3.1581 25 6 3.3093 -4.8646 3.2761 26 1 2.6332 -5.2009 4.0623 27 6 3.8105 -3.4534 3.5897 28 8 4.8032 -3.0770 2.6330 29 1 -0.4850 0.8400 -0.0004 30 1 -1.1207 -2.7333 -3.6117 31 1 -2.1375 -4.8795 -4.2425 32 1 -1.6590 -6.9135 -2.9492 33 1 -0.1585 -6.8394 -1.0102 34 1 2.1301 -2.8367 2.1734 35 1 3.5180 -3.1843 1.1145 36 1 2.6298 -6.3183 0.4269 37 1 4.0391 -5.2159 0.4478 38 1 3.4264 -7.5553 2.3373 39 1 4.9634 -7.1781 1.4891 40 1 5.4178 -5.2892 2.9119 41 1 4.6318 -6.4030 4.0782 42 1 4.2443 -3.4355 4.5895 43 1 2.9767 -2.7528 3.5428 44 1 5.1661 -2.1913 2.7706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744406772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:34 Heat of formation + Delta-G solvation = -4.236349 kcal Electronic energy + Delta-G solvation = -29427.414630 eV Core-core repulsion = 25538.544724 eV Total energy + Delta-G solvation = -3888.869906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.48933 -39.33222 -37.51036 -36.25895 -35.79645 -33.69863 -32.12779 -31.75929 -30.29767 -30.05932 -28.65541 -26.06539 -25.68603 -24.67114 -22.92879 -22.07205 -20.88268 -20.82344 -19.23864 -18.69814 -17.82576 -17.47674 -16.87795 -15.73860 -15.42154 -15.29232 -14.99113 -14.74259 -14.44274 -14.17537 -13.79018 -13.70027 -13.58115 -13.22600 -12.96450 -12.70288 -12.33358 -12.24938 -12.17383 -11.83998 -11.55185 -11.35294 -11.31364 -11.08764 -11.03162 -10.93327 -10.74501 -10.62459 -10.54834 -10.50863 -10.43391 -9.72357 -9.49824 -8.87414 -8.67702 -8.30358 -8.26674 -7.73666 -6.97588 -6.65172 -4.47039 1.58967 1.73628 3.03963 3.11992 3.15718 3.33549 3.76681 3.97523 4.11923 4.30961 4.55640 4.73082 4.92992 4.96674 5.07317 5.07697 5.24017 5.39929 5.44222 5.47289 5.53680 5.55690 5.64019 5.75187 5.88415 5.88626 6.00424 6.01703 6.11482 6.14506 6.20098 6.33077 6.34372 6.50448 6.55567 6.65495 6.79162 6.88056 7.08647 7.13073 7.21992 7.46016 7.47941 7.59651 7.66265 7.67683 8.18710 8.53241 8.77327 9.29287 9.57826 10.35748 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008764 B = 0.006764 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.226400 B = 4138.726193 C = 7016.820015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.080 3.920 3 Si 0.926 3.074 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.384 4.384 8 H 0.108 0.892 9 N -0.352 5.352 10 C 0.518 3.482 11 O -0.506 6.506 12 C -0.212 4.212 13 C -0.038 4.038 14 C -0.178 4.178 15 C -0.091 4.091 16 C -0.131 4.131 17 C 0.167 3.833 18 N -0.545 5.545 19 C 0.362 3.638 20 C 0.110 3.890 21 N -0.498 5.498 22 C 0.058 3.942 23 C -0.131 4.131 24 C -0.133 4.133 25 C 0.072 3.928 26 H 0.094 0.906 27 C 0.051 3.949 28 O -0.565 6.565 29 H 0.279 0.721 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.237 -8.496 5.690 11.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.137 4.137 3 Si 0.750 3.250 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.510 4.510 8 H 0.125 0.875 9 N -0.055 5.055 10 C 0.313 3.687 11 O -0.381 6.381 12 C -0.219 4.219 13 C -0.058 4.058 14 C -0.198 4.198 15 C -0.111 4.111 16 C -0.151 4.151 17 C 0.051 3.949 18 N -0.272 5.272 19 C 0.099 3.901 20 C -0.019 4.019 21 N -0.222 5.222 22 C -0.069 4.069 23 C -0.169 4.169 24 C -0.172 4.172 25 C -0.037 4.037 26 H 0.112 0.888 27 C -0.027 4.027 28 O -0.371 6.371 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.339 -9.131 5.487 11.917 hybrid contribution 0.821 2.473 -0.355 2.630 sum 6.160 -6.658 5.133 10.423 Atomic orbital electron populations 1.69831 1.07234 1.29374 1.36095 1.25376 0.94887 1.00368 0.93070 0.85972 0.79483 0.80542 0.78959 1.19600 1.20578 1.18944 1.19579 0.97993 0.84643 1.48829 0.87495 1.42253 1.35080 1.08035 1.20171 1.18190 0.81812 0.88287 0.80453 1.90657 1.60784 1.32282 1.54344 1.20856 1.05206 0.94411 1.01468 1.20869 0.93105 0.97515 0.94308 1.20809 1.04115 0.92824 1.02024 1.20954 0.97348 0.97727 0.95054 1.20584 0.99752 0.96377 0.98379 1.18886 0.92884 0.92365 0.90771 1.68537 1.17137 1.23442 1.18085 1.22895 0.93197 0.82577 0.91424 1.21329 0.97446 0.90621 0.92528 1.63489 1.48629 1.08284 1.01773 1.22993 0.95533 0.93746 0.94665 1.22713 0.99640 0.97994 0.96527 1.22748 0.98680 0.97102 0.98651 1.22634 0.93991 0.92903 0.94140 0.88795 1.22823 0.91472 0.97235 0.91215 1.86525 1.58058 1.38181 1.54359 0.91053 0.86050 0.86759 0.86633 0.85807 0.88231 0.89602 0.88850 0.94452 0.91126 0.91594 0.90436 0.91733 0.93694 0.91972 0.77505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.25 11.60 55.50 0.64 -21.61 16 2 C 0.08 2.07 4.30 -17.49 -0.08 1.99 16 3 Si 0.93 19.66 29.60 -169.99 -5.03 14.63 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.38 -9.73 8.26 -14.88 -0.12 -9.85 16 8 H 0.11 2.47 7.04 -52.48 -0.37 2.10 16 9 N -0.35 -9.08 2.69 -59.56 -0.16 -9.24 16 10 C 0.52 14.21 6.95 -12.47 -0.09 14.12 16 11 O -0.51 -15.15 14.26 5.17 0.07 -15.07 16 12 C -0.21 -5.13 5.89 -104.77 -0.62 -5.75 16 13 C -0.04 -0.82 9.68 -39.32 -0.38 -1.20 16 14 C -0.18 -3.13 10.02 -39.51 -0.40 -3.52 16 15 C -0.09 -1.50 10.00 -39.54 -0.40 -1.90 16 16 C -0.13 -2.44 10.03 -39.25 -0.39 -2.84 16 17 C 0.17 3.75 6.63 -84.50 -0.56 3.19 16 18 N -0.54 -12.09 7.71 -8.10 -0.06 -12.16 16 19 C 0.36 8.26 7.28 -154.87 -1.13 7.13 16 20 C 0.11 2.05 2.70 -4.97 -0.01 2.04 16 21 N -0.50 -8.20 4.79 -224.77 -1.08 -9.28 16 22 C 0.06 0.92 5.68 -2.30 -0.01 0.91 16 23 C -0.13 -1.61 7.08 -24.59 -0.17 -1.79 16 24 C -0.13 -1.55 6.36 -24.91 -0.16 -1.71 16 25 C 0.07 0.94 3.85 -66.72 -0.26 0.68 16 26 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 27 C 0.05 0.60 5.98 37.16 0.22 0.82 16 28 O -0.57 -6.98 9.86 -35.23 -0.35 -7.32 16 29 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.12 2.56 7.83 -52.48 -0.41 2.15 16 31 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.10 1.89 5.85 -51.92 -0.30 1.58 16 35 H 0.09 1.61 5.08 -51.93 -0.26 1.34 16 36 H 0.09 1.61 7.11 -51.93 -0.37 1.24 16 37 H 0.04 0.64 7.63 -51.93 -0.40 0.24 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.96 6.94 -51.93 -0.36 0.60 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.80 6.01 -51.92 -0.31 0.48 16 44 H 0.38 3.30 9.12 45.56 0.42 3.71 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -32.11 348.31 -10.15 -42.26 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.89 Total: 10.21 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -4.55 Total: 2.33 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.65 Total: -52.28 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.27 Total: -22.39 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.11 -10.15 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744406772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.023 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds