Wall clock time and date at job start Tue Mar 31 2020 04:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34828 * 125.89917 * 2 1 4 4 C 1.36427 * 107.61401 * 179.97438 * 3 2 1 5 5 C 1.48493 * 126.21842 * 179.97438 * 4 3 2 6 6 C 1.39424 * 120.04919 * 359.97438 * 5 4 3 7 7 C 1.38127 * 120.18832 * 180.02562 * 6 5 4 8 8 C 1.38045 * 120.27608 * 359.95709 * 7 6 5 9 9 C 1.39660 * 120.08416 * 0.04163 * 8 7 6 10 10 C 1.47746 * 120.09259 * 180.02562 * 9 8 7 11 11 O 1.21465 * 119.99984 * 179.97438 * 10 9 8 12 12 O 1.34712 * 120.00210 * 359.97438 * 10 9 8 13 13 C 1.45199 * 117.00560 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.47407 * 180.02562 * 13 12 10 15 15 O 1.21290 * 119.99911 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99952 * 180.02562 * 14 13 12 17 17 C 1.37093 * 119.99906 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00189 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00029 * 180.02562 * 17 16 14 20 20 N 1.31407 * 119.99757 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00100 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47454 * 59.99562 * 21 19 17 23 23 H 1.48495 * 109.47274 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.46918 * 299.99664 * 21 19 17 25 25 C 1.39015 * 120.03862 * 180.02562 * 5 4 3 26 26 C 1.40838 * 107.55567 * 0.24400 * 4 3 2 27 27 N 1.30679 * 108.09815 * 359.59172 * 26 4 3 28 28 H 1.08998 * 109.47145 * 89.99605 * 1 2 3 29 29 H 1.08992 * 109.47213 * 209.99923 * 1 2 3 30 30 H 1.09001 * 109.46872 * 329.99951 * 1 2 3 31 31 H 1.08004 * 126.19445 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.90240 * 0.02562 * 6 5 4 33 33 H 1.07998 * 119.86137 * 179.97438 * 7 6 5 34 34 H 1.07995 * 119.95854 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.46677 * 300.00754 * 13 12 10 36 36 H 1.09000 * 109.46895 * 60.00008 * 13 12 10 37 37 H 0.96996 * 120.00098 * 0.02562 * 16 14 13 38 38 H 0.96998 * 119.99799 * 180.02562 * 20 19 17 39 39 H 1.08003 * 120.13884 * 359.69671 * 25 5 4 40 40 H 1.08001 * 125.94729 * 179.75855 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.0922 0.0000 4 6 3.5510 0.6641 0.0006 5 6 4.7599 1.5264 0.0003 6 6 4.6276 2.9143 -0.0013 7 6 5.7502 3.7191 -0.0021 8 6 7.0104 3.1557 -0.0005 9 6 7.1563 1.7667 0.0010 10 6 8.5050 1.1635 0.0032 11 8 8.6299 -0.0447 0.0051 12 8 9.5962 1.9534 0.0033 13 6 10.8889 1.2921 0.0049 14 6 11.9832 2.3281 0.0053 15 8 11.7014 3.5079 0.0038 16 7 13.2750 1.9438 0.0063 17 6 14.2706 2.8863 0.0072 18 1 14.0197 3.9369 0.0067 19 6 15.6024 2.4902 0.0077 20 7 15.9076 1.2120 0.0078 21 14 16.9589 3.7744 0.0082 22 1 16.8367 4.6231 1.2206 23 1 18.2809 3.0980 0.0093 24 1 16.8375 4.6230 -1.2045 25 6 6.0253 0.9507 0.0004 26 6 3.5330 -0.7441 -0.0048 27 7 2.2859 -1.1342 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9235 2.1199 0.0004 32 1 3.6445 3.3614 -0.0018 33 1 5.6415 4.7936 -0.0037 34 1 7.8846 3.7897 -0.0008 35 1 10.9775 0.6701 0.8956 36 1 10.9790 0.6683 -0.8843 37 1 13.5004 1.0004 0.0064 38 1 16.8373 0.9355 0.0085 39 1 6.1320 -0.1241 0.0057 40 1 4.3992 -1.3892 -0.0094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745217812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:48 Heat of formation + Delta-G solvation = -14.287848 kcal Electronic energy + Delta-G solvation = -25564.632523 eV Core-core repulsion = 21539.493657 eV Total energy + Delta-G solvation = -4025.138866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61306 -40.38185 -38.83157 -37.98473 -36.01545 -34.01684 -33.96184 -32.40151 -31.40313 -31.30701 -29.54211 -28.28860 -26.91306 -24.95985 -23.98751 -23.13042 -21.68592 -20.79834 -20.11162 -19.54934 -18.21263 -18.04506 -17.08655 -16.63679 -16.24621 -16.09797 -15.88939 -15.58615 -14.97501 -14.90955 -14.52184 -14.15572 -14.07976 -13.91421 -13.80583 -13.44775 -13.37828 -12.93109 -12.90603 -12.75998 -12.19937 -12.04466 -11.80549 -11.60215 -11.49216 -11.09691 -10.92357 -10.47512 -10.42405 -10.37459 -10.26565 -10.00165 -9.85111 -9.57592 -9.19207 -8.49981 -8.09097 -8.06224 -6.47846 -3.89887 0.58130 0.93952 1.59094 2.06969 2.36448 2.71674 2.83268 3.17105 3.24303 3.29032 3.75655 3.80570 4.02597 4.13313 4.31145 4.55449 4.58108 4.63954 4.67011 4.84531 4.87183 4.91144 5.06063 5.07345 5.17334 5.24340 5.26966 5.47061 5.57370 5.69558 5.73256 5.79310 6.07103 6.15920 6.20515 6.24984 6.33121 6.52273 6.63733 6.69086 7.27215 7.49492 7.87089 7.98554 8.50786 9.08976 9.41539 9.91526 10.69294 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.038948 B = 0.001832 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.741886 B =15280.420335 C =15978.714096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.374 5.374 3 C 0.069 3.931 4 C -0.197 4.197 5 C -0.011 4.011 6 C -0.091 4.091 7 C -0.125 4.125 8 C -0.066 4.066 9 C -0.110 4.110 10 C 0.504 3.496 11 O -0.511 6.511 12 O -0.320 6.320 13 C 0.061 3.939 14 C 0.439 3.561 15 O -0.576 6.576 16 N -0.552 5.552 17 C -0.303 4.303 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.055 4.055 26 C 0.067 3.933 27 N -0.295 5.295 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.178 0.822 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.138 0.862 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.391 -0.843 0.035 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.155 5.155 3 C -0.078 4.078 4 C -0.208 4.208 5 C -0.012 4.012 6 C -0.109 4.109 7 C -0.143 4.143 8 C -0.084 4.084 9 C -0.111 4.111 10 C 0.349 3.651 11 O -0.401 6.401 12 O -0.235 6.235 13 C -0.016 4.016 14 C 0.224 3.776 15 O -0.460 6.460 16 N -0.190 5.190 17 C -0.432 4.432 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.537 5.537 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.073 4.073 26 C -0.120 4.120 27 N -0.115 5.115 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.195 0.805 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.155 0.845 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -30.299 -1.521 0.040 30.337 hybrid contribution 1.483 0.500 -0.013 1.565 sum -28.816 -1.021 0.027 28.834 Atomic orbital electron populations 1.21905 0.73871 1.04711 1.03603 1.48421 1.06866 1.03786 1.56425 1.22517 0.90548 0.93466 1.01233 1.18808 0.91841 0.92970 1.17202 1.17847 0.90567 0.92058 1.00728 1.21291 0.98931 0.92424 0.98295 1.21074 0.91818 1.00338 1.01022 1.21675 0.98789 0.93775 0.94162 1.19027 0.89792 0.94193 1.08127 1.21232 0.85759 0.85176 0.72957 1.90810 1.87613 1.15433 1.46279 1.86583 1.14286 1.39575 1.83035 1.22765 0.79894 0.95349 1.03616 1.19306 0.83343 0.89042 0.85934 1.90553 1.82480 1.17729 1.55284 1.41690 1.03368 1.10071 1.63830 1.19679 0.84548 0.90691 1.48316 0.87659 1.25307 0.98491 0.97036 0.96891 1.69606 1.20061 1.14496 1.49583 0.85855 0.79011 0.79822 0.79165 1.19778 1.20891 1.19772 1.21150 0.89916 1.00356 0.95918 1.24068 0.95230 0.94272 0.98452 1.77310 1.01781 1.08025 1.24422 0.90521 0.89092 0.89302 0.80485 0.85786 0.84956 0.83692 0.89437 0.89431 0.77137 0.91590 0.84468 0.79444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.34 11.46 59.85 0.69 1.02 16 2 N -0.37 -2.93 4.00 -67.90 -0.27 -3.20 16 3 C 0.07 0.50 10.87 -16.89 -0.18 0.32 16 4 C -0.20 -1.85 6.04 -105.34 -0.64 -2.48 16 5 C -0.01 -0.11 5.87 -104.94 -0.62 -0.72 16 6 C -0.09 -0.77 9.56 -39.18 -0.37 -1.15 16 7 C -0.12 -1.17 10.02 -39.69 -0.40 -1.57 16 8 C -0.07 -0.81 9.61 -39.12 -0.38 -1.18 16 9 C -0.11 -1.52 5.87 -105.02 -0.62 -2.14 16 10 C 0.50 8.52 7.90 34.62 0.27 8.79 16 11 O -0.51 -9.31 16.13 -19.24 -0.31 -9.62 16 12 O -0.32 -6.11 9.00 -47.20 -0.42 -6.54 16 13 C 0.06 1.19 5.95 36.00 0.21 1.40 16 14 C 0.44 10.63 7.86 -10.99 -0.09 10.55 16 15 O -0.58 -15.96 16.08 -14.11 -0.23 -16.19 16 16 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16 17 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 18 H 0.11 3.02 7.16 -52.48 -0.38 2.65 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 21 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.05 -0.66 9.12 -38.83 -0.35 -1.01 16 26 C 0.07 0.67 11.41 -17.06 -0.19 0.47 16 27 N -0.30 -3.14 12.54 30.80 0.39 -2.75 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.18 0.62 7.27 -52.48 -0.38 0.24 16 32 H 0.12 0.66 7.00 -52.49 -0.37 0.29 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.15 1.89 7.60 -52.49 -0.40 1.50 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.14 1.57 6.63 -52.48 -0.35 1.22 16 40 H 0.19 1.55 7.34 -52.49 -0.39 1.16 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -35.37 361.66 -6.91 -42.28 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.25 Total: 7.97 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -2.90 Total: 4.34 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.78 Total: -43.42 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.96 Total: -32.34 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.37 -6.91 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745217812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.993 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds