Wall clock time and date at job start Tue Mar 31 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 S 1.65601 * 120.00132 * 265.00058 * 4 2 1 6 6 O 1.42099 * 104.27410 * 181.06642 * 5 4 2 7 7 O 1.42101 * 104.27773 * 308.92737 * 5 4 2 8 8 C 1.81399 * 104.44625 * 64.99929 * 5 4 2 9 9 C 1.53002 * 109.46960 * 179.97438 * 8 5 4 10 10 C 1.52998 * 109.47217 * 179.97438 * 9 8 5 11 11 C 1.50697 * 109.47210 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99829 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00371 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99504 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00538 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47044 * 60.00288 * 15 13 11 17 17 H 1.48493 * 109.47379 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46914 * 300.00457 * 15 13 11 19 19 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 20 20 N 1.31070 * 126.65753 * 284.68340 * 19 2 1 21 21 N 1.28842 * 107.99282 * 179.89401 * 20 19 2 22 22 N 1.28747 * 109.39303 * 0.37758 * 21 20 19 23 23 N 1.29021 * 108.80525 * 359.76827 * 22 21 20 24 24 C 1.46500 * 126.43163 * 179.97438 * 23 22 21 25 25 C 1.53001 * 117.50255 * 8.77153 * 24 23 22 26 26 C 1.53002 * 117.50046 * 300.11005 * 24 23 22 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97003 * 119.99991 * 84.99836 * 4 2 1 31 31 H 1.09000 * 109.47264 * 299.99985 * 8 5 4 32 32 H 1.09000 * 109.47380 * 59.99953 * 8 5 4 33 33 H 1.09000 * 109.47184 * 300.00113 * 9 8 5 34 34 H 1.09000 * 109.47049 * 59.99828 * 9 8 5 35 35 H 1.09000 * 109.47232 * 300.00201 * 10 9 8 36 36 H 1.09000 * 109.47155 * 60.00011 * 10 9 8 37 37 H 0.97004 * 119.99471 * 179.97438 * 14 13 11 38 38 H 1.09001 * 115.54947 * 154.43756 * 24 23 22 39 39 H 1.09007 * 117.49473 * 359.97438 * 25 24 23 40 40 H 1.08999 * 117.50071 * 145.01672 * 25 24 23 41 41 H 1.08997 * 117.49611 * 214.97949 * 26 24 23 42 42 H 1.09000 * 117.49605 * 359.97397 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4123 0.1771 2.5505 6 8 2.8607 -0.8030 3.4765 7 8 3.2875 1.1906 2.0751 8 6 0.8408 0.8987 3.0985 9 6 1.0752 1.7338 4.3589 10 6 -0.2501 2.3430 4.8208 11 6 -0.0192 3.1660 6.0619 12 1 0.9737 3.2468 6.4792 13 6 -1.0751 3.8167 6.6641 14 7 -2.2841 3.7186 6.1556 15 14 -0.7891 4.8363 8.2029 16 1 0.1783 5.9227 7.9041 17 1 -2.0753 5.4276 8.6511 18 1 -0.2427 3.9686 9.2771 19 6 2.0324 -0.7103 -1.2306 20 7 2.0419 -2.0045 -1.4380 21 7 2.5453 -2.2168 -2.6048 22 7 2.8644 -1.0920 -3.1439 23 7 2.5637 -0.1394 -2.3274 24 6 2.7635 1.2945 -2.5520 25 6 3.1951 1.7370 -3.9516 26 6 4.1946 1.7791 -2.7930 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 2.1110 -1.6562 1.1948 31 1 0.4387 1.5351 2.3102 32 1 0.1316 0.1008 3.3184 33 1 1.4771 1.0971 5.1471 34 1 1.7845 2.5318 4.1394 35 1 -0.6516 2.9798 4.0325 36 1 -0.9598 1.5453 5.0403 37 1 -3.0271 4.1761 6.5794 38 1 2.0949 1.9546 -1.9994 39 1 3.3308 0.9612 -4.7052 40 1 2.8108 2.6883 -4.3195 41 1 4.4674 2.7582 -2.3991 42 1 4.9874 1.0312 -2.7840 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790936972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:15 Heat of formation + Delta-G solvation = 61.469224 kcal Electronic energy + Delta-G solvation = -26038.476919 eV Core-core repulsion = 22184.359828 eV Total energy + Delta-G solvation = -3854.117091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.54225 -38.38795 -37.43278 -36.86867 -35.91617 -34.78419 -34.05247 -32.38017 -32.27355 -30.00223 -27.91421 -25.75849 -25.12516 -23.79385 -23.18645 -22.46641 -21.54832 -20.75270 -19.45453 -18.48052 -17.65077 -17.44612 -17.06805 -16.56021 -15.90786 -15.78068 -15.45594 -14.96849 -14.55247 -14.40530 -14.07977 -13.92861 -13.51924 -13.08298 -12.73336 -12.58229 -12.49811 -12.36297 -12.24994 -12.11602 -12.08178 -12.00754 -11.94223 -11.85183 -11.46304 -11.33492 -11.28135 -10.94738 -10.93219 -10.79496 -10.55916 -10.32781 -10.06744 -10.02790 -9.44318 -9.19495 -8.45853 -6.11282 -4.14555 0.22290 0.80907 1.43600 1.88768 2.59380 2.90264 3.28196 3.29868 3.32624 3.35471 3.64629 3.76583 3.93668 4.06596 4.07046 4.19766 4.37414 4.39776 4.56872 4.80320 4.90041 4.94696 4.98731 5.02568 5.11356 5.23801 5.25305 5.27432 5.37967 5.39797 5.51790 5.69115 5.80337 5.85599 6.16646 6.34299 6.66558 6.78253 7.49489 7.59182 7.86302 8.26398 8.26830 8.91394 9.50544 10.99788 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.002659 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.172333 B =10527.110716 C =10888.604327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.236 3.764 3 H 0.116 0.884 4 N -1.114 6.114 5 S 2.596 3.404 6 O -0.952 6.952 7 O -0.960 6.960 8 C -0.609 4.609 9 C -0.106 4.106 10 C 0.032 3.968 11 C -0.528 4.528 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.188 3.812 20 N -0.290 5.290 21 N -0.074 5.074 22 N -0.094 5.094 23 N -0.272 5.272 24 C 0.038 3.962 25 C -0.152 4.152 26 C -0.159 4.159 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.426 0.574 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.262 0.738 38 H 0.165 0.835 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 -3.702 -20.084 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.124 3.876 3 H 0.133 0.867 4 N -0.871 5.871 5 S 2.692 3.308 6 O -0.943 6.943 7 O -0.950 6.950 8 C -0.741 4.741 9 C -0.146 4.146 10 C -0.007 4.007 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.092 4.092 20 N -0.140 5.140 21 N -0.067 5.067 22 N -0.079 5.079 23 N -0.073 5.073 24 C -0.065 4.065 25 C -0.190 4.190 26 C -0.198 4.198 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.261 0.739 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.182 0.818 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.285 -4.609 -20.487 22.575 hybrid contribution -0.782 1.020 1.094 1.688 sum 7.503 -3.588 -19.393 21.101 Atomic orbital electron populations 1.22536 0.91801 1.05174 1.04388 1.19098 0.95203 0.94905 0.78367 0.86660 1.55884 1.84127 1.20849 1.26286 1.05556 0.77818 0.74462 0.72934 1.93608 1.79959 1.58954 1.61740 1.93568 1.61881 1.60235 1.79348 1.30670 1.20620 1.12387 1.10418 1.21529 1.03755 0.97687 0.91603 1.19054 0.89705 0.95660 0.96246 1.21207 0.94621 1.30101 1.10732 0.92415 1.25010 0.95125 0.96581 0.97570 1.69945 0.99522 1.43473 1.40448 0.86618 0.77419 0.80501 0.83273 1.20119 1.21235 1.20096 1.25997 0.99926 0.90489 0.92779 1.74956 1.17763 1.11151 1.10113 1.78659 1.11580 1.15157 1.01299 1.78829 1.18890 0.92114 1.18070 1.47875 1.38991 1.08882 1.11506 1.22530 1.03202 0.75033 1.05698 1.23483 1.00956 1.04249 0.90289 1.23587 0.90946 1.04299 1.00920 0.89282 0.89978 0.90677 0.73865 0.85275 0.84700 0.91421 0.91485 0.96101 0.96022 0.92801 0.81786 0.86533 0.86068 0.85729 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.46 37.16 0.35 -0.92 16 2 C 0.24 2.08 3.18 -69.08 -0.22 1.86 16 3 H 0.12 0.81 6.56 -51.93 -0.34 0.47 16 4 N -1.11 -11.54 5.35 -5.88 -0.03 -11.57 16 5 S 2.60 34.38 5.44 -107.50 -0.58 33.79 16 6 O -0.95 -15.93 18.08 -57.54 -1.04 -16.97 16 7 O -0.96 -14.81 17.39 -57.54 -1.00 -15.81 16 8 C -0.61 -8.05 5.22 37.16 0.19 -7.85 16 9 C -0.11 -1.96 5.16 -26.73 -0.14 -2.10 16 10 C 0.03 0.75 4.97 -27.89 -0.14 0.61 16 11 C -0.53 -14.27 9.11 -34.44 -0.31 -14.58 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 15 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.19 2.00 6.95 -155.44 -1.08 0.92 16 20 N -0.29 -3.78 12.14 32.70 0.40 -3.38 16 21 N -0.07 -1.02 13.43 60.35 0.81 -0.21 16 22 N -0.09 -1.12 12.69 60.35 0.77 -0.36 16 23 N -0.27 -2.65 3.67 -51.80 -0.19 -2.84 16 24 C 0.04 0.23 6.43 -67.93 -0.44 -0.21 16 25 C -0.15 -0.65 10.16 -26.69 -0.27 -0.92 16 26 C -0.16 -0.81 10.46 -26.69 -0.28 -1.09 16 27 H 0.09 0.58 5.78 -51.93 -0.30 0.28 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.43 4.26 8.61 -34.47 -0.30 3.97 16 31 H 0.13 1.37 6.77 -51.92 -0.35 1.02 16 32 H 0.13 1.57 8.14 -51.92 -0.42 1.15 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.16 0.53 7.60 -51.93 -0.39 0.13 16 39 H 0.12 0.63 7.85 -51.92 -0.41 0.22 16 40 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -36.62 369.54 -7.88 -44.50 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.86 Total: -0.96 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.43 Total: -22.76 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 2.49 Total: -43.29 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -2.04 Total: -32.78 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 34.38 SS G_CDS: -0.58 Total: 33.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.62 -7.88 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790936972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.972 kcal (2) G-P(sol) polarization free energy of solvation -36.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds