Wall clock time and date at job start Tue Mar 31 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46615 * 2 1 4 4 N 1.46497 * 109.47254 * 240.00457 * 2 1 3 5 5 S 1.65599 * 120.00110 * 94.99537 * 4 2 1 6 6 O 1.42105 * 104.27797 * 181.07392 * 5 4 2 7 7 O 1.42101 * 104.27901 * 308.93100 * 5 4 2 8 8 C 1.81397 * 104.44825 * 65.00280 * 5 4 2 9 9 C 1.53009 * 109.47235 * 179.97438 * 8 5 4 10 10 C 1.52995 * 109.46990 * 179.97438 * 9 8 5 11 11 C 1.50700 * 109.47073 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99821 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00285 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00002 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00089 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47293 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46799 * 120.00203 * 15 13 11 18 18 H 1.48493 * 109.47424 * 240.00186 * 15 13 11 19 19 C 1.50695 * 109.47163 * 119.99983 * 2 1 3 20 20 N 1.31071 * 126.65649 * 75.03041 * 19 2 1 21 21 N 1.28841 * 107.98724 * 179.97438 * 20 19 2 22 22 N 1.28739 * 109.40087 * 359.97438 * 21 20 19 23 23 N 1.29016 * 108.80518 * 359.74757 * 22 21 20 24 24 C 1.46505 * 126.43853 * 180.24162 * 23 22 21 25 25 C 1.52997 * 117.49450 * 8.93459 * 24 23 22 26 26 C 1.52995 * 117.49946 * 300.27130 * 24 23 22 27 27 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47041 * 299.99902 * 1 2 3 29 29 H 1.09000 * 109.47228 * 59.99866 * 1 2 3 30 30 H 0.96999 * 119.99844 * 275.00263 * 4 2 1 31 31 H 1.09004 * 109.47032 * 299.99803 * 8 5 4 32 32 H 1.09000 * 109.47124 * 60.00075 * 8 5 4 33 33 H 1.08995 * 109.47216 * 300.00010 * 9 8 5 34 34 H 1.09000 * 109.46805 * 60.00123 * 9 8 5 35 35 H 1.08995 * 109.47375 * 300.00190 * 10 9 8 36 36 H 1.09000 * 109.47020 * 60.00531 * 10 9 8 37 37 H 0.96996 * 119.99810 * 179.97438 * 14 13 11 38 38 H 1.08998 * 115.54455 * 154.59727 * 24 23 22 39 39 H 1.09001 * 117.50249 * 359.97438 * 25 24 23 40 40 H 1.09002 * 117.49942 * 145.02157 * 25 24 23 41 41 H 1.08999 * 117.49609 * 214.97255 * 26 24 23 42 42 H 1.08995 * 117.50129 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 -1.1962 5 16 2.4121 0.1774 -2.5505 6 8 2.8122 -0.8073 -3.4937 7 8 1.2750 0.9968 -2.7845 8 6 3.8312 1.1874 -2.0440 9 6 4.2941 2.0447 -3.2239 10 6 5.4906 2.8970 -2.7965 11 6 5.9468 3.7409 -3.9587 12 1 5.4344 3.6761 -4.9071 13 6 7.0179 4.5965 -3.8109 14 7 7.6416 4.6759 -2.6558 15 14 7.5839 5.6420 -5.2517 16 1 6.7226 5.3687 -6.4302 17 1 7.4851 7.0789 -4.8896 18 1 8.9934 5.3101 -5.5806 19 6 2.0323 -0.7104 1.2304 20 7 2.0371 -2.0042 1.4398 21 7 2.5449 -2.2169 2.6047 22 7 2.8647 -1.0923 3.1436 23 7 2.5694 -0.1399 2.3248 24 6 2.7759 1.2935 2.5465 25 6 3.5884 1.7085 3.7747 26 6 2.0741 1.9310 3.7472 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 2.1110 -1.6561 -1.1950 31 1 3.5398 1.8344 -1.2166 32 1 4.6458 0.5364 -1.7268 33 1 4.5855 1.3975 -4.0510 34 1 3.4796 2.6957 -3.5415 35 1 5.1987 3.5443 -1.9695 36 1 6.3052 2.2463 -2.4786 37 1 8.3953 5.2775 -2.5520 38 1 2.8811 1.8980 1.6456 39 1 3.9689 0.9151 4.4181 40 1 4.2277 2.5864 3.6821 41 1 1.7179 2.9552 3.6365 42 1 1.4584 1.2841 4.3720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790936974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:19 Heat of formation + Delta-G solvation = 61.231377 kcal Electronic energy + Delta-G solvation = -26285.294325 eV Core-core repulsion = 22431.166921 eV Total energy + Delta-G solvation = -3854.127404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.52582 -38.35941 -37.43394 -36.83424 -35.90669 -34.80766 -34.02690 -32.35457 -32.29192 -29.97421 -27.95129 -25.72003 -25.08879 -23.84764 -23.19623 -22.43740 -21.50157 -20.81917 -19.41794 -18.52236 -17.62284 -17.34125 -17.02779 -16.69164 -15.86800 -15.72596 -15.51620 -14.97445 -14.55371 -14.31444 -14.15491 -13.90873 -13.46446 -12.88594 -12.73843 -12.68306 -12.46978 -12.39462 -12.22064 -12.16351 -12.03662 -12.00309 -11.92583 -11.84728 -11.41378 -11.35884 -11.25717 -11.00448 -10.94890 -10.77091 -10.55466 -10.32775 -10.10109 -10.05798 -9.46094 -9.19686 -8.49195 -6.14126 -4.17258 0.22103 0.82041 1.44174 1.90089 2.59869 2.92668 3.23950 3.28944 3.32071 3.36627 3.66571 3.79265 3.93488 3.98604 4.11609 4.19811 4.35556 4.40988 4.60171 4.81806 4.95029 4.95843 4.98962 5.01079 5.10421 5.22912 5.29755 5.39371 5.40780 5.44643 5.56041 5.71352 5.81489 5.88921 6.13544 6.30461 6.65555 6.75099 7.45986 7.55159 7.83645 8.23528 8.28921 8.89106 9.48222 10.97087 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.003412 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.895992 B = 8204.368817 C = 9713.870351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.244 3.756 3 H 0.106 0.894 4 N -1.114 6.114 5 S 2.598 3.402 6 O -0.952 6.952 7 O -0.953 6.953 8 C -0.612 4.612 9 C -0.105 4.105 10 C 0.031 3.969 11 C -0.527 4.527 12 H 0.059 0.941 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.180 3.820 20 N -0.290 5.290 21 N -0.073 5.073 22 N -0.091 5.091 23 N -0.271 5.271 24 C 0.036 3.964 25 C -0.150 4.150 26 C -0.160 4.160 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.426 0.574 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.164 0.836 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.392 -5.603 13.272 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.132 3.868 3 H 0.124 0.876 4 N -0.871 5.871 5 S 2.693 3.307 6 O -0.942 6.942 7 O -0.943 6.943 8 C -0.744 4.744 9 C -0.145 4.145 10 C -0.008 4.008 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.100 4.100 20 N -0.139 5.139 21 N -0.067 5.067 22 N -0.077 5.077 23 N -0.072 5.072 24 C -0.067 4.067 25 C -0.188 4.188 26 C -0.199 4.199 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.262 0.738 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.182 0.818 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.472 -6.613 13.292 20.048 hybrid contribution 0.967 1.190 -0.475 1.605 sum -12.505 -5.423 12.817 18.710 Atomic orbital electron populations 1.22353 0.91432 1.04549 1.04364 1.19004 0.96043 0.93719 0.78013 0.87639 1.55954 1.82247 1.20545 1.28404 1.05556 0.76933 0.75065 0.73119 1.93612 1.84423 1.58034 1.58109 1.93586 1.47174 1.70252 1.83270 1.30605 1.18835 1.14039 1.10904 1.21519 1.02159 0.97779 0.93028 1.19065 0.90788 0.93856 0.97042 1.21276 1.14682 1.22814 0.97711 0.92251 1.25012 0.96355 0.97026 0.95919 1.69958 1.21790 1.38041 1.23646 0.86499 0.78650 0.80049 0.82634 1.19550 1.20917 1.20907 1.26142 0.99938 0.90668 0.93240 1.74954 1.17600 1.11133 1.10224 1.78664 1.11527 1.15158 1.01325 1.78846 1.18721 0.92078 1.18018 1.47896 1.38715 1.08914 1.11644 1.22560 1.11425 0.74754 0.97997 1.23503 0.94643 1.04428 0.96191 1.23582 0.96258 1.02891 0.97121 0.90601 0.91169 0.88627 0.73828 0.85923 0.85144 0.91360 0.91334 0.96187 0.96140 0.92918 0.81833 0.86434 0.85780 0.85840 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.50 37.16 0.35 -0.97 16 2 C 0.24 2.16 3.06 -69.09 -0.21 1.95 16 3 H 0.11 0.66 5.99 -51.92 -0.31 0.35 16 4 N -1.11 -11.49 5.35 -5.88 -0.03 -11.53 16 5 S 2.60 34.16 5.38 -107.50 -0.58 33.59 16 6 O -0.95 -15.84 18.08 -57.54 -1.04 -16.88 16 7 O -0.95 -14.23 17.11 -57.54 -0.98 -15.22 16 8 C -0.61 -8.31 5.96 37.16 0.22 -8.09 16 9 C -0.11 -1.97 5.16 -26.73 -0.14 -2.10 16 10 C 0.03 0.73 4.97 -27.89 -0.14 0.60 16 11 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -25.61 13.29 55.43 0.74 -24.88 16 15 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.18 1.89 6.94 -155.43 -1.08 0.81 16 20 N -0.29 -3.76 12.14 32.70 0.40 -3.37 16 21 N -0.07 -1.03 13.43 60.35 0.81 -0.22 16 22 N -0.09 -1.12 12.69 60.35 0.77 -0.35 16 23 N -0.27 -2.67 3.67 -51.81 -0.19 -2.86 16 24 C 0.04 0.23 6.58 -67.93 -0.45 -0.22 16 25 C -0.15 -0.82 10.16 -26.69 -0.27 -1.09 16 26 C -0.16 -0.72 10.46 -26.69 -0.28 -1.00 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.81 7.42 -51.93 -0.39 0.43 16 30 H 0.43 4.25 8.61 -34.47 -0.30 3.95 16 31 H 0.12 1.31 7.44 -51.92 -0.39 0.92 16 32 H 0.13 1.65 8.14 -51.92 -0.42 1.23 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 38 H 0.16 0.70 7.23 -51.93 -0.38 0.33 16 39 H 0.12 0.77 7.85 -51.93 -0.41 0.36 16 40 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -36.08 371.38 -7.87 -43.95 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.93 Total: -0.58 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -2.40 Total: -23.14 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 2.49 Total: -43.20 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -2.02 Total: -32.10 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 34.16 SS G_CDS: -0.58 Total: 33.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.08 -7.87 -43.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790936974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.181 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds