Wall clock time and date at job start Tue Mar 31 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47084 * 2 1 4 4 C 1.46503 * 120.00187 * 275.00582 * 3 2 1 5 5 C 1.50701 * 109.46991 * 280.11463 * 4 3 2 6 6 H 1.08001 * 119.99835 * 4.10920 * 5 4 3 7 7 C 1.37877 * 120.00043 * 184.10548 * 5 4 3 8 8 N 1.31512 * 119.99862 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47355 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47141 * 120.00291 * 9 7 5 12 12 H 1.48506 * 109.47461 * 239.99931 * 9 7 5 13 13 S 1.65606 * 119.99775 * 95.00017 * 3 2 1 14 14 O 1.42094 * 106.40171 * 330.10214 * 13 3 2 15 15 O 1.42098 * 106.40006 * 197.17545 * 13 3 2 16 16 N 1.65607 * 107.21343 * 83.63929 * 13 3 2 17 17 C 1.46495 * 119.99959 * 65.44586 * 16 13 3 18 18 C 1.53003 * 109.46980 * 165.62437 * 17 16 13 19 19 N 1.46504 * 109.46728 * 179.97438 * 18 17 16 20 20 C 1.38407 * 119.99546 * 180.02562 * 19 18 17 21 21 N 1.32496 * 119.21773 * 359.45736 * 20 19 18 22 22 C 1.32284 * 120.73803 * 179.71497 * 21 20 19 23 23 C 1.38601 * 119.19836 * 0.54898 * 22 21 20 24 24 C 1.38608 * 118.55810 * 359.72479 * 23 22 21 25 25 N 1.32280 * 119.19394 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47237 * 299.99582 * 1 2 3 27 27 H 1.09003 * 109.47567 * 60.00053 * 1 2 3 28 28 H 1.09003 * 109.47460 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47237 * 240.00418 * 2 1 3 30 30 H 1.08995 * 109.47878 * 120.00515 * 2 1 3 31 31 H 1.08994 * 109.47000 * 40.11461 * 4 3 2 32 32 H 1.09008 * 109.47026 * 160.11843 * 4 3 2 33 33 H 0.96997 * 119.99783 * 180.02562 * 8 7 5 34 34 H 0.96997 * 119.99878 * 245.43961 * 16 13 3 35 35 H 1.09005 * 109.47551 * 45.62689 * 17 16 13 36 36 H 1.08998 * 109.47317 * 285.62587 * 17 16 13 37 37 H 1.08999 * 109.46718 * 60.00207 * 18 17 16 38 38 H 1.08994 * 109.47134 * 299.99728 * 18 17 16 39 39 H 0.96990 * 120.00457 * 359.72942 * 19 18 17 40 40 H 1.08007 * 120.39825 * 180.29666 * 22 21 20 41 41 H 1.07999 * 120.72143 * 179.74912 * 23 22 21 42 42 H 1.07997 * 120.39810 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4374 1.6936 -1.9436 6 1 4.0486 0.9136 -1.5141 7 6 3.8276 2.3096 -3.1138 8 7 3.0836 3.2597 -3.6365 9 14 5.4131 1.7945 -3.9566 10 1 6.0614 0.7125 -3.1729 11 1 5.1091 1.3008 -5.3238 12 1 6.3289 2.9603 -4.0436 13 16 2.4121 2.1202 1.4288 14 8 1.5768 1.5428 2.4227 15 8 2.4519 3.5152 1.1613 16 7 3.9619 1.6711 1.8018 17 6 5.0729 2.0926 0.9451 18 6 6.3966 1.8667 1.6786 19 7 7.5077 2.2877 0.8215 20 6 8.8110 2.1766 1.2739 21 7 9.0354 1.6975 2.4886 22 6 10.2692 1.5732 2.9491 23 6 11.3320 1.9616 2.1488 24 6 11.0613 2.4637 0.8855 25 7 9.8044 2.5571 0.4841 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3117 1.8788 -1.9110 32 1 2.1832 3.1803 -1.0654 33 1 3.3580 3.6927 -4.4600 34 1 4.1339 1.1292 2.5877 35 1 4.9662 3.1507 0.7058 36 1 5.0635 1.5092 0.0245 37 1 6.5033 0.8087 1.9178 38 1 6.4060 2.4503 2.5991 39 1 7.3302 2.6402 -0.0645 40 1 10.4461 1.1775 3.9385 41 1 12.3490 1.8746 2.5016 42 1 11.8668 2.7749 0.2370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800018248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:40 Heat of formation + Delta-G solvation = -20.055194 kcal Electronic energy + Delta-G solvation = -26461.427780 eV Core-core repulsion = 22603.775525 eV Total energy + Delta-G solvation = -3857.652255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91963 -37.01148 -36.60990 -36.04921 -35.23476 -34.42680 -33.68758 -32.75401 -30.98470 -29.94827 -27.69432 -26.65259 -24.71050 -23.30296 -23.18940 -22.22107 -21.67598 -18.93980 -18.29869 -17.54054 -17.05195 -16.83714 -16.48058 -15.92749 -15.60173 -15.55303 -15.03305 -14.69854 -14.46137 -14.38774 -14.20207 -13.73133 -13.49034 -13.29805 -12.93692 -12.34245 -12.09989 -12.06246 -11.93509 -11.69955 -11.44681 -11.32354 -11.24377 -11.09923 -11.03843 -10.96342 -10.90687 -10.58064 -10.48360 -10.39264 -10.05158 -9.83562 -9.17454 -9.09904 -8.54898 -8.14594 -8.09442 -6.16057 -4.23215 1.10096 1.12964 1.23290 2.79585 3.20513 3.30498 3.30869 3.55819 3.85994 4.11561 4.14131 4.30955 4.54586 4.74639 4.84846 5.09604 5.12540 5.15118 5.17572 5.28049 5.39169 5.56492 5.67474 5.72578 5.77837 5.89060 6.05846 6.11549 6.16481 6.32025 6.35651 6.65892 6.69356 6.75141 7.03571 7.21388 7.34591 7.41087 7.43191 7.64866 7.80978 8.11075 8.28526 8.81474 9.42860 10.91755 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011033 B = 0.004190 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.118246 B = 6681.236300 C = 8569.030355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.541 4.541 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.280 1.280 13 S 2.787 3.213 14 O -0.998 6.998 15 O -0.977 6.977 16 N -1.127 6.127 17 C 0.104 3.896 18 C 0.133 3.867 19 N -0.691 5.691 20 C 0.568 3.432 21 N -0.570 5.570 22 C 0.191 3.809 23 C -0.302 4.302 24 C 0.193 3.807 25 N -0.571 5.571 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.408 0.592 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.420 0.580 40 H 0.164 0.836 41 H 0.141 0.859 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.036 -5.377 10.653 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.580 4.580 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.206 1.206 13 S 2.795 3.205 14 O -0.982 6.982 15 O -0.960 6.960 16 N -0.886 5.886 17 C -0.022 4.022 18 C 0.007 3.993 19 N -0.328 5.328 20 C 0.211 3.789 21 N -0.293 5.293 22 C 0.023 3.977 23 C -0.329 4.329 24 C 0.025 3.975 25 N -0.294 5.294 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.240 0.760 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.182 0.818 41 H 0.159 0.841 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 9.257 -4.494 10.608 14.779 hybrid contribution 2.145 -0.718 -0.609 2.342 sum 11.401 -5.212 9.998 16.035 Atomic orbital electron populations 1.22211 0.96913 1.01348 1.02513 1.20952 0.93692 0.82823 1.02010 1.57723 1.78466 1.23007 1.24082 1.19234 0.97264 0.92585 0.78897 1.21550 1.07341 1.20747 1.08401 0.91795 1.24943 0.97030 0.94720 0.97016 1.69937 1.37829 1.24161 1.20374 0.86623 0.83453 0.78681 0.79768 1.19635 1.20942 1.20621 1.01719 0.72435 0.73703 0.72646 1.93557 1.65161 1.79795 1.59661 1.93583 1.86405 1.30868 1.85161 1.55891 1.24878 1.69995 1.37802 1.21479 0.84361 1.02499 0.93906 1.21451 0.83872 1.00609 0.93337 1.44064 1.00581 1.68091 1.20023 1.19304 0.86719 0.87366 0.85490 1.67960 1.24864 1.22026 1.14465 1.22910 0.86658 0.89422 0.98692 1.22478 1.01667 1.10470 0.98247 1.22911 0.92563 0.88799 0.93229 1.67931 1.00363 1.24107 1.36967 0.92449 0.92094 0.92448 0.90152 0.92175 0.94736 0.92572 0.92566 0.75988 0.89556 0.88852 0.91075 0.91011 0.74120 0.81850 0.84134 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.15 0.38 -2.26 16 2 C 0.13 2.20 6.02 -4.05 -0.02 2.17 16 3 N -0.99 -19.42 2.84 -115.67 -0.33 -19.75 16 4 C 0.24 5.74 5.46 -5.19 -0.03 5.71 16 5 C -0.54 -13.26 8.51 -34.44 -0.29 -13.56 16 6 H 0.06 1.49 6.47 -52.49 -0.34 1.15 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 9 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 S 2.79 52.75 6.07 -107.50 -0.65 52.10 16 14 O -1.00 -19.58 17.17 -57.17 -0.98 -20.56 16 15 O -0.98 -22.07 16.01 -57.17 -0.92 -22.99 16 16 N -1.13 -17.00 6.06 -10.61 -0.06 -17.06 16 17 C 0.10 1.62 6.33 -4.04 -0.03 1.60 16 18 C 0.13 1.78 5.79 -4.04 -0.02 1.76 16 19 N -0.69 -9.98 5.70 -62.31 -0.36 -10.33 16 20 C 0.57 8.30 8.43 -322.81 -2.72 5.58 16 21 N -0.57 -7.56 9.59 -13.93 -0.13 -7.69 16 22 C 0.19 1.89 11.30 -17.22 -0.19 1.69 16 23 C -0.30 -2.61 10.16 -39.31 -0.40 -3.01 16 24 C 0.19 2.01 11.30 -17.22 -0.19 1.81 16 25 N -0.57 -8.06 10.46 -13.93 -0.15 -8.20 16 26 H 0.06 0.92 7.97 -51.93 -0.41 0.51 16 27 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 30 H 0.06 0.88 7.78 -51.93 -0.40 0.47 16 31 H 0.03 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.06 1.48 6.77 -51.92 -0.35 1.13 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 34 H 0.41 4.93 8.65 -34.47 -0.30 4.63 16 35 H 0.09 1.48 7.75 -51.93 -0.40 1.07 16 36 H 0.09 1.59 5.86 -51.93 -0.30 1.28 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.42 6.17 8.59 -40.82 -0.35 5.82 16 40 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -32.88 368.07 -11.73 -44.61 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.80 Total: 10.10 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -3.62 Total: 3.12 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -0.29 Total: -86.80 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.90 Total: -43.55 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 52.75 SS G_CDS: -0.65 Total: 52.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.88 -11.73 -44.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800018248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.558 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds