Wall clock time and date at job start Tue Mar 31 2020 05:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30862 * 126.20765 * 2 1 4 4 C 1.34573 * 107.29229 * 179.97438 * 3 2 1 5 5 C 1.47835 * 126.02687 * 179.97438 * 4 3 2 6 6 O 1.21555 * 120.00317 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99882 * 0.03355 * 5 4 3 8 8 C 1.46500 * 120.00164 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47357 * 179.97438 * 8 7 5 10 10 O 1.21298 * 119.99939 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00090 * 179.97438 * 9 8 7 12 12 C 1.37094 * 119.99830 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00298 * 0.02562 * 12 11 9 14 14 C 1.38951 * 120.00137 * 179.97438 * 12 11 9 15 15 N 1.31417 * 119.99507 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00473 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46756 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47407 * 120.00133 * 16 14 12 19 19 H 1.48498 * 109.47240 * 240.00548 * 16 14 12 20 20 N 1.31565 * 107.94851 * 359.74575 * 4 3 2 21 21 N 1.28849 * 108.70935 * 0.42139 * 20 4 3 22 22 C 1.40142 * 125.77318 * 179.83877 * 21 20 4 23 23 C 1.38853 * 120.06452 * 324.69291 * 22 21 20 24 24 C 1.38112 * 119.93169 * 179.97438 * 23 22 21 25 25 C 1.38285 * 120.06839 * 0.02562 * 24 23 22 26 26 C 1.38281 * 120.13633 * 359.97438 * 25 24 23 27 27 C 1.38122 * 120.06846 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47587 * 270.02911 * 1 2 3 29 29 H 1.09005 * 109.46676 * 30.02683 * 1 2 3 30 30 H 1.08997 * 109.47370 * 150.02282 * 1 2 3 31 31 H 0.97002 * 119.99630 * 359.97438 * 7 5 4 32 32 H 1.09003 * 109.46509 * 299.99806 * 8 7 5 33 33 H 1.08994 * 109.46870 * 59.99576 * 8 7 5 34 34 H 0.96999 * 119.99892 * 0.02562 * 11 9 8 35 35 H 0.96999 * 119.99480 * 179.97438 * 15 14 12 36 36 H 1.08001 * 120.03636 * 0.02562 * 23 22 21 37 37 H 1.08000 * 119.96928 * 180.02562 * 24 23 22 38 38 H 1.07994 * 119.93477 * 179.72538 * 25 24 23 39 39 H 1.07996 * 119.97088 * 180.02562 * 26 25 24 40 40 H 1.07997 * 120.03741 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0559 0.0000 4 6 3.5530 0.6197 0.0006 5 6 4.7632 1.4688 0.0003 6 8 5.8654 0.9563 0.0004 7 7 4.6443 2.8114 0.0000 8 6 5.8435 3.6529 0.0002 9 6 5.4386 5.1044 -0.0008 10 8 4.2638 5.4064 -0.0021 11 7 6.3818 6.0672 -0.0002 12 6 6.0133 7.3877 -0.0017 13 1 4.9673 7.6565 -0.0028 14 6 6.9857 8.3803 -0.0006 15 7 8.2585 8.0532 0.0014 16 14 6.4838 10.1796 -0.0018 17 1 5.0021 10.2801 -0.0034 18 1 7.0233 10.8449 1.2112 19 1 7.0267 10.8441 -1.2138 20 7 3.5308 -0.6958 0.0065 21 7 2.3037 -1.0885 0.0006 22 6 1.8699 -2.4211 0.0008 23 6 2.5909 -3.3874 -0.6881 24 6 2.1612 -4.7000 -0.6856 25 6 1.0140 -5.0522 0.0015 26 6 0.2938 -4.0921 0.6884 27 6 0.7184 -2.7778 0.6897 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3634 -0.8901 -0.5135 31 1 3.7648 3.2203 -0.0004 32 1 6.4357 3.4411 0.8905 33 1 6.4363 3.4408 -0.8894 34 1 7.3212 5.8258 0.0005 35 1 8.9373 8.7461 0.0018 36 1 3.4872 -3.1131 -1.2245 37 1 2.7218 -5.4521 -1.2208 38 1 0.6775 -6.0784 -0.0017 39 1 -0.6015 -4.3702 1.2244 40 1 0.1558 -2.0285 1.2267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804820918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:47 Heat of formation + Delta-G solvation = 53.765766 kcal Electronic energy + Delta-G solvation = -26003.733131 eV Core-core repulsion = 22013.838042 eV Total energy + Delta-G solvation = -3989.895089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.87943 -39.84683 -39.30613 -38.02310 -34.91293 -34.45357 -33.74038 -33.53771 -31.54064 -31.35190 -30.38058 -28.54159 -27.89396 -25.22801 -24.04511 -23.68659 -22.52119 -21.21149 -20.24971 -19.54354 -18.67077 -18.12829 -17.49468 -17.09259 -16.76792 -15.81984 -15.44280 -15.27015 -15.10196 -14.97927 -14.58233 -14.36389 -14.18961 -13.97186 -13.86742 -13.64299 -13.41344 -13.29397 -13.02172 -12.48081 -12.17007 -12.07896 -11.95839 -11.63871 -11.60377 -11.11881 -11.03412 -10.63337 -10.37715 -10.30262 -10.13700 -9.91102 -9.63824 -9.61220 -9.07525 -8.79959 -8.59468 -8.06421 -6.48096 -3.89753 0.26049 0.69848 1.43663 1.82819 1.92448 3.01814 3.13102 3.13388 3.25398 3.32701 3.41856 3.74824 3.77743 4.04952 4.14110 4.24009 4.33029 4.50002 4.60402 4.72198 4.82772 4.90003 4.96898 5.00701 5.07196 5.20276 5.34798 5.41178 5.64035 5.66610 5.79127 5.85623 5.91147 5.96440 6.08557 6.09040 6.17612 6.47445 6.61393 7.49972 7.61059 7.93539 7.95837 8.34493 8.49237 9.08350 9.42710 9.90886 10.68943 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.035606 B = 0.001961 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.205991 B =14273.920381 C =14957.611029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.220 3.780 3 N -0.469 5.469 4 C 0.161 3.839 5 C 0.612 3.388 6 O -0.525 6.525 7 N -0.683 5.683 8 C 0.109 3.891 9 C 0.429 3.571 10 O -0.592 6.592 11 N -0.550 5.550 12 C -0.303 4.303 13 H 0.107 0.893 14 C 0.025 3.975 15 N -0.895 5.895 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 N -0.252 5.252 21 N -0.257 5.257 22 C 0.126 3.874 23 C -0.096 4.096 24 C -0.102 4.102 25 C -0.110 4.110 26 C -0.101 4.101 27 C -0.117 4.117 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.422 0.578 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.396 0.604 35 H 0.273 0.727 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.461 -25.960 -0.072 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.054 4.054 3 N -0.194 5.194 4 C -0.119 4.119 5 C 0.393 3.607 6 O -0.399 6.399 7 N -0.338 5.338 8 C -0.018 4.018 9 C 0.214 3.786 10 O -0.478 6.478 11 N -0.185 5.185 12 C -0.433 4.433 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.207 1.207 20 N -0.088 5.088 21 N -0.046 5.046 22 C 0.036 3.964 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.137 4.137 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.261 0.739 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.230 0.770 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.718 -25.906 -0.071 30.302 hybrid contribution -0.030 0.872 0.020 0.873 sum -15.748 -25.034 -0.050 29.576 Atomic orbital electron populations 1.20518 0.83012 1.05402 1.04541 1.25033 0.97598 0.81544 1.01176 1.71383 1.00372 1.27657 1.19998 1.23808 0.92984 0.88507 1.06620 1.16139 0.84976 0.81656 0.77934 1.90821 1.25215 1.73718 1.50127 1.45389 1.11950 1.04127 1.72323 1.21055 0.87094 0.89923 1.03721 1.19678 0.86891 0.86315 0.85671 1.90525 1.17726 1.82582 1.56973 1.41781 1.08219 1.05659 1.62801 1.19791 0.95031 0.80435 1.47995 0.87570 1.25328 0.94759 1.00841 0.96883 1.69628 0.99626 1.34739 1.49534 0.85750 0.79036 0.81484 0.77773 1.19120 1.20657 1.20650 1.74450 1.00716 1.13986 1.19616 1.44491 1.03657 1.06355 1.50145 1.17581 0.97093 0.79964 1.01754 1.21153 0.99981 0.92451 0.97949 1.21152 0.96614 0.95311 0.98986 1.21386 0.94897 1.00091 0.96476 1.21061 1.00237 0.91597 0.99106 1.21147 0.95765 0.97929 0.98875 0.88822 0.87878 0.89594 0.73865 0.89313 0.89316 0.77012 0.91681 0.84359 0.84577 0.84962 0.84472 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 8.66 36.00 0.31 -0.18 16 2 C 0.22 2.66 7.79 -155.25 -1.21 1.45 16 3 N -0.47 -7.33 11.09 -8.47 -0.09 -7.43 16 4 C 0.16 2.80 7.96 -156.30 -1.24 1.56 16 5 C 0.61 11.67 7.83 -12.33 -0.10 11.58 16 6 O -0.52 -11.07 17.08 5.32 0.09 -10.98 16 7 N -0.68 -12.98 5.52 -62.44 -0.34 -13.32 16 8 C 0.11 2.12 6.15 -5.20 -0.03 2.09 16 9 C 0.43 10.14 7.85 -10.99 -0.09 10.06 16 10 O -0.59 -15.70 15.24 5.54 0.08 -15.61 16 11 N -0.55 -13.86 5.29 -10.96 -0.06 -13.91 16 12 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 13 H 0.11 3.05 7.16 -52.48 -0.38 2.68 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 15 N -0.89 -24.15 13.05 55.50 0.72 -23.43 16 16 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 N -0.25 -4.10 11.76 32.08 0.38 -3.72 16 21 N -0.26 -3.27 3.47 -8.00 -0.03 -3.29 16 22 C 0.13 1.20 6.23 -83.60 -0.52 0.68 16 23 C -0.10 -0.82 9.71 -39.40 -0.38 -1.21 16 24 C -0.10 -0.59 10.04 -39.61 -0.40 -0.99 16 25 C -0.11 -0.49 10.04 -39.55 -0.40 -0.88 16 26 C -0.10 -0.45 10.04 -39.61 -0.40 -0.85 16 27 C -0.12 -0.75 8.25 -39.40 -0.33 -1.07 16 28 H 0.09 0.42 7.72 -51.93 -0.40 0.02 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.39 6.86 -51.93 -0.36 0.03 16 31 H 0.42 8.21 7.15 -40.82 -0.29 7.92 16 32 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.14 1.31 8.03 -52.49 -0.42 0.89 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 39 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 40 H 0.14 0.65 6.05 -52.49 -0.32 0.33 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -35.20 356.88 -8.07 -43.27 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.16 Total: 12.99 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: 0.58 Total: -65.11 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.18 Total: -26.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.20 -8.07 -43.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.034 kcal (2) G-P(sol) polarization free energy of solvation -35.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds