Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99924 * 2 1 4 4 H 1.48502 * 109.47098 * 240.00040 * 3 2 1 5 5 H 1.48510 * 109.47382 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47186 * 120.00192 * 3 2 1 7 7 C 1.38947 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00080 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99645 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99822 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99816 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00083 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47258 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00044 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99948 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00041 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.47386 * 180.02562 * 16 14 13 18 18 C 1.39735 * 127.06243 * 124.99647 * 17 16 14 19 19 N 1.31423 * 105.88732 * 180.02562 * 18 17 16 20 20 N 1.28597 * 108.72321 * 359.97438 * 19 18 17 21 21 C 1.40201 * 124.61116 * 179.97438 * 20 19 18 22 22 C 1.38845 * 120.06329 * 0.02755 * 21 20 19 23 23 C 1.38125 * 119.92894 * 179.97438 * 22 21 20 24 24 C 1.38273 * 120.06983 * 0.02562 * 23 22 21 25 25 C 1.38285 * 120.13319 * 359.97311 * 24 23 22 26 26 C 1.38118 * 120.06657 * 0.02992 * 25 24 23 27 27 N 1.28597 * 110.77882 * 0.24731 * 20 19 18 28 28 H 0.97004 * 120.00229 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00156 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47156 * 59.99843 * 12 10 9 31 31 H 1.08999 * 109.46889 * 299.99927 * 12 10 9 32 32 H 0.97009 * 119.99666 * 359.97438 * 13 12 10 33 33 H 1.08996 * 109.47380 * 59.99960 * 16 14 13 34 34 H 1.09007 * 109.46778 * 300.00187 * 16 14 13 35 35 H 1.08001 * 127.05354 * 0.02562 * 18 17 16 36 36 H 1.07998 * 120.03280 * 0.24936 * 22 21 20 37 37 H 1.08000 * 119.96142 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.93720 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.96304 * 180.02562 * 25 24 23 40 40 H 1.08001 * 120.03360 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7466 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0002 12 6 1.2438 -4.8630 0.0022 13 7 2.1957 -5.9765 0.0027 14 6 1.7465 -7.2471 0.0038 15 8 0.5541 -7.4687 0.0039 16 6 2.7258 -8.3925 0.0049 17 6 1.9724 -9.6977 0.0053 18 6 2.1056 -10.7473 -0.9074 19 7 1.2565 -11.6720 -0.5187 20 7 0.6456 -11.2555 0.5334 21 6 -0.3344 -11.9813 1.2251 22 6 -0.7063 -13.2439 0.7832 23 6 -1.6717 -13.9567 1.4670 24 6 -2.2680 -13.4140 2.5903 25 6 -1.8998 -12.1567 3.0328 26 6 -0.9351 -11.4390 2.3532 27 7 1.0517 -10.0803 0.8616 28 1 -0.4851 0.8401 -0.0004 29 1 0.3534 -2.3906 0.0016 30 1 0.6168 -4.9209 -0.8875 31 1 0.6175 -4.9205 0.8924 32 1 3.1495 -5.7991 0.0022 33 1 3.3524 -8.3340 0.8948 34 1 3.3526 -8.3355 -0.8852 35 1 2.7700 -10.7898 -1.7579 36 1 -0.2379 -13.6700 -0.0918 37 1 -1.9616 -14.9387 1.1235 38 1 -3.0230 -13.9731 3.1231 39 1 -2.3671 -11.7356 3.9107 40 1 -0.6481 -10.4569 2.6991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = 71.080888 kcal Electronic energy + Delta-G solvation = -25735.194964 eV Core-core repulsion = 21746.050716 eV Total energy + Delta-G solvation = -3989.144249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.95575 -39.66131 -39.39614 -38.10662 -34.61501 -34.37034 -33.66058 -33.04111 -31.54092 -31.37187 -31.02221 -28.93333 -27.14902 -24.58310 -24.22443 -23.31336 -21.71641 -21.35919 -20.02755 -19.53757 -18.68121 -18.11660 -17.30875 -16.68489 -16.60460 -15.85830 -15.57317 -15.46660 -15.35659 -15.01615 -14.45956 -14.43499 -14.21487 -14.05514 -13.87523 -13.56941 -13.36638 -13.14033 -12.71830 -12.19318 -12.13691 -11.83849 -11.65156 -11.63430 -11.48387 -11.10857 -10.87453 -10.61162 -10.51413 -10.34112 -10.32098 -9.71409 -9.63387 -9.44291 -8.79622 -8.64767 -8.58997 -8.11029 -6.52044 -3.94296 0.42966 0.90643 1.93628 2.03019 2.18284 2.82707 3.13292 3.20999 3.23847 3.35935 3.41278 3.73331 3.77428 4.10755 4.42449 4.47228 4.60035 4.67105 4.79380 4.87620 4.91359 5.02052 5.10415 5.16113 5.17200 5.28968 5.37121 5.56586 5.78358 5.78391 5.91637 5.95990 5.97772 6.01022 6.06548 6.10221 6.28356 6.67254 6.74730 7.45075 7.79772 7.91052 8.12548 8.42689 8.46881 9.03630 9.38467 9.86203 10.64707 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.001903 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.336093 B =14706.289033 C =15589.485050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.110 3.890 13 N -0.707 5.707 14 C 0.513 3.487 15 O -0.535 6.535 16 C -0.051 4.051 17 C 0.027 3.973 18 C -0.007 4.007 19 N -0.293 5.293 20 N -0.109 5.109 21 C 0.148 3.852 22 C -0.107 4.107 23 C -0.105 4.105 24 C -0.117 4.117 25 C -0.102 4.102 26 C -0.102 4.102 27 N -0.254 5.254 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.411 0.589 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.204 0.796 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.227 -25.967 2.548 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.017 4.017 13 N -0.362 5.362 14 C 0.297 3.703 15 O -0.412 6.412 16 C -0.093 4.093 17 C -0.138 4.138 18 C -0.190 4.190 19 N -0.131 5.131 20 N 0.000 5.000 21 C 0.058 3.942 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.135 4.135 25 C -0.120 4.120 26 C -0.123 4.123 27 N -0.093 5.093 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.249 0.751 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.221 0.779 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.359 -26.612 3.188 26.906 hybrid contribution 0.898 1.579 -0.606 1.914 sum -1.461 -25.033 2.582 25.208 Atomic orbital electron populations 1.69608 1.06018 1.28648 1.49197 1.25334 0.95674 0.99963 0.96770 0.85865 0.78767 0.80126 0.79153 1.19771 1.20863 1.19769 1.19684 0.93440 0.82008 1.48396 0.87694 1.41798 1.09492 1.04495 1.62571 1.19748 0.88293 0.84994 0.85601 1.90491 1.13685 1.86842 1.57436 1.20929 0.91877 0.85735 1.03190 1.45650 1.11594 1.04477 1.74499 1.20229 0.89579 0.83567 0.76938 1.90735 1.16622 1.84660 1.49180 1.19920 0.96579 0.86451 1.06340 1.22553 0.98155 0.98213 0.94853 1.24762 1.00910 0.90797 1.02535 1.74005 1.09200 1.27395 1.02486 1.44755 1.27767 1.09687 1.17823 1.17440 0.90797 0.91941 0.94025 1.20952 0.98389 0.92291 1.01151 1.21049 0.95824 1.00093 0.95354 1.21345 0.99804 0.95725 0.96655 1.21100 0.96513 0.94509 0.99928 1.21055 0.96370 1.01346 0.93520 1.74123 1.12298 0.97393 1.25447 0.91525 0.77036 0.89935 0.89916 0.75062 0.86704 0.86215 0.77916 0.84132 0.84726 0.85134 0.84584 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 13.05 55.50 0.72 -23.13 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.31 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.55 5.29 -10.96 -0.06 -13.61 16 10 C 0.43 9.69 7.85 -10.98 -0.09 9.60 16 11 O -0.60 -14.98 15.24 5.54 0.08 -14.89 16 12 C 0.11 2.01 6.15 -5.19 -0.03 1.98 16 13 N -0.71 -11.19 5.53 -61.47 -0.34 -11.53 16 14 C 0.51 7.77 7.82 -10.99 -0.09 7.69 16 15 O -0.54 -10.26 15.60 5.56 0.09 -10.17 16 16 C -0.05 -0.54 6.30 -29.04 -0.18 -0.72 16 17 C 0.03 0.34 6.12 -82.21 -0.50 -0.16 16 18 C -0.01 -0.07 12.16 -17.17 -0.21 -0.28 16 19 N -0.29 -3.85 11.21 30.69 0.34 -3.50 16 20 N -0.11 -1.53 4.13 32.49 0.13 -1.40 16 21 C 0.15 1.79 6.72 -83.58 -0.56 1.23 16 22 C -0.11 -1.03 9.59 -39.40 -0.38 -1.41 16 23 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 24 C -0.12 -0.78 10.04 -39.55 -0.40 -1.17 16 25 C -0.10 -0.81 10.04 -39.61 -0.40 -1.20 16 26 C -0.10 -1.11 9.59 -39.40 -0.38 -1.48 16 27 N -0.25 -3.83 10.62 33.73 0.36 -3.48 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.41 6.15 7.44 -40.82 -0.30 5.85 16 33 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.12 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.14 1.27 7.63 -52.49 -0.40 0.87 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.14 1.67 7.63 -52.49 -0.40 1.27 16 LS Contribution 359.99 15.07 5.43 5.43 Total: -1.00 -35.18 359.99 -6.43 -41.61 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -4.32 Total: 14.16 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -3.85 Total: 5.09 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 1.16 Total: -56.65 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: 0.17 Total: -25.07 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.18 -6.43 -41.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.696 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds