Wall clock time and date at job start Tue Mar 31 2020 05:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 119.99675 * 2 1 4 4 H 1.48502 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47365 * 299.99708 * 3 2 1 6 6 H 1.48500 * 109.47184 * 59.99418 * 3 2 1 7 7 C 1.38651 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99877 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99696 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99930 * 185.40257 * 9 7 2 11 11 C 1.38951 * 120.03080 * 185.92555 * 10 9 7 12 12 C 1.38136 * 120.07555 * 179.97438 * 11 10 9 13 13 C 1.38190 * 120.13808 * 359.75146 * 12 11 10 14 14 C 1.38948 * 120.06582 * 0.49994 * 13 12 11 15 15 N 1.39817 * 120.04018 * 179.77021 * 14 13 12 16 16 C 1.34779 * 119.99854 * 326.12755 * 15 14 13 17 17 O 1.21628 * 120.00311 * 354.78071 * 16 15 14 18 18 C 1.47270 * 119.99789 * 174.78472 * 16 15 14 19 19 N 1.30702 * 125.44661 * 359.97438 * 18 16 15 20 20 N 1.39116 * 108.45019 * 180.20071 * 19 18 16 21 21 C 1.46636 * 129.38644 * 178.91363 * 20 19 18 22 22 C 1.53678 * 107.24946 * 205.08990 * 21 20 19 23 23 C 1.52950 * 109.60458 * 307.61697 * 22 21 20 24 24 N 1.46745 * 110.51968 * 57.49891 * 23 22 21 25 25 C 1.30634 * 119.18962 * 328.35902 * 24 23 22 26 26 N 1.36264 * 129.72755 * 182.13505 * 25 24 23 27 27 C 1.38724 * 120.02880 * 5.90093 * 10 9 7 28 28 H 0.96990 * 120.00227 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.96636 * 359.95498 * 11 10 9 30 30 H 1.08003 * 119.92670 * 179.97438 * 12 11 10 31 31 H 1.08007 * 119.96788 * 180.25384 * 13 12 11 32 32 H 0.97002 * 120.00162 * 146.11634 * 15 14 13 33 33 H 1.08999 * 109.89834 * 324.52090 * 21 20 19 34 34 H 1.08997 * 109.89624 * 85.57801 * 21 20 19 35 35 H 1.08994 * 109.45102 * 67.66102 * 22 21 20 36 36 H 1.09001 * 109.44823 * 187.58349 * 22 21 20 37 37 H 1.09003 * 109.26617 * 177.76443 * 23 22 21 38 38 H 1.08997 * 109.26677 * 297.26515 * 23 22 21 39 39 H 0.96999 * 126.08242 * 358.62094 * 26 25 24 40 40 H 1.07992 * 120.07140 * 0.04138 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8908 2.3965 -1.2126 6 1 1.8906 2.3965 1.2124 7 6 2.0090 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3684 0.0005 10 6 2.0696 -3.5042 0.1150 11 6 1.4548 -4.7448 -0.0014 12 6 2.2016 -5.9011 0.1143 13 6 3.5628 -5.8281 0.3410 14 6 4.1827 -4.5907 0.4636 15 7 5.5592 -4.5175 0.6978 16 6 6.1663 -5.4591 1.4471 17 8 5.5044 -6.3182 1.9977 18 6 7.6311 -5.4477 1.5992 19 7 8.4426 -4.5784 1.0570 20 7 9.7443 -4.9005 1.4276 21 6 11.0047 -4.2465 1.0620 22 6 12.1167 -5.3004 1.1823 23 6 12.0566 -5.9543 2.5637 24 7 10.7380 -6.5569 2.7907 25 6 9.6850 -6.0099 2.2443 26 7 8.3718 -6.3605 2.3419 27 6 3.4350 -3.4272 0.3477 28 1 -0.4850 0.8399 -0.0004 29 1 0.3918 -4.8052 -0.1823 30 1 1.7212 -6.8642 0.0238 31 1 4.1448 -6.7339 0.4270 32 1 6.0773 -3.7892 0.3208 33 1 10.9493 -3.8812 0.0365 34 1 11.2029 -3.4172 1.7409 35 1 11.9800 -6.0615 0.4142 36 1 13.0867 -4.8214 1.0495 37 1 12.8216 -6.7280 2.6289 38 1 12.2427 -5.1992 3.3274 39 1 8.0170 -7.1129 2.8407 40 1 3.9150 -2.4641 0.4388 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822400906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:37 Heat of formation + Delta-G solvation = 77.485667 kcal Electronic energy + Delta-G solvation = -26551.758751 eV Core-core repulsion = 22562.892234 eV Total energy + Delta-G solvation = -3988.866517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36850 -40.32695 -38.77754 -37.44715 -36.55456 -34.75334 -34.20664 -32.31562 -31.49894 -31.09500 -29.48120 -28.71722 -26.14794 -25.34182 -24.41640 -23.65925 -22.05471 -21.89873 -20.48216 -19.86627 -18.74954 -18.09962 -17.70715 -17.17451 -16.89996 -15.93859 -15.73359 -15.66951 -15.17810 -14.99293 -14.83052 -14.32188 -14.19926 -14.07947 -13.98935 -13.66622 -13.58464 -13.08268 -12.51313 -12.25780 -12.16117 -11.93065 -11.87368 -11.66647 -11.36024 -11.26064 -11.07436 -10.90029 -10.51238 -10.48233 -10.42875 -9.88506 -9.56226 -9.54623 -8.87740 -7.96333 -7.85219 -7.27688 -6.50672 -4.10585 0.73257 1.56866 1.87500 2.07002 2.14943 2.28994 2.89625 3.08968 3.09845 3.15263 3.28746 3.75042 3.91285 4.19651 4.34556 4.41394 4.49328 4.71364 4.76515 5.01530 5.03801 5.12331 5.15539 5.19093 5.29544 5.57319 5.58624 5.63073 5.84695 5.88446 6.02444 6.07995 6.14734 6.49061 6.62934 6.75776 6.80206 7.01644 7.18754 7.21669 7.32813 7.43863 7.62724 7.76750 7.87490 7.93749 8.94657 9.63182 10.67111 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.002697 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.928590 B =10378.183730 C =12027.589144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.173 6.173 10 C 0.168 3.832 11 C -0.193 4.193 12 C -0.062 4.062 13 C -0.204 4.204 14 C 0.174 3.826 15 N -0.637 5.637 16 C 0.601 3.399 17 O -0.497 6.497 18 C 0.247 3.753 19 N -0.230 5.230 20 N -0.471 5.471 21 C 0.158 3.842 22 C -0.166 4.166 23 C 0.076 3.924 24 N -0.624 5.624 25 C 0.557 3.443 26 N -0.609 5.609 27 C -0.248 4.248 28 H 0.270 0.730 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.418 0.582 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.450 0.550 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.041 -8.456 1.095 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.076 6.076 10 C 0.113 3.887 11 C -0.213 4.213 12 C -0.081 4.081 13 C -0.225 4.225 14 C 0.082 3.918 15 N -0.281 5.281 16 C 0.382 3.618 17 O -0.368 6.368 18 C -0.035 4.035 19 N -0.056 5.056 20 N -0.283 5.283 21 C 0.037 3.963 22 C -0.206 4.206 23 C -0.055 4.055 24 N -0.369 5.369 25 C 0.193 3.807 26 N -0.247 5.247 27 C -0.270 4.270 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.255 0.745 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.294 0.706 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.598 -8.541 1.290 22.336 hybrid contribution 0.827 1.007 0.047 1.304 sum 21.426 -7.534 1.337 22.751 Atomic orbital electron populations 1.70040 1.05957 1.27672 1.45769 1.25290 0.95842 0.98850 0.96458 0.85659 0.79113 0.80406 0.78309 1.19101 1.20096 1.20132 1.21330 0.91730 0.80797 1.53054 0.89080 1.84029 1.33917 1.11395 1.78277 1.19071 0.89390 0.88214 0.92029 1.20307 1.00286 0.89953 1.10756 1.20528 0.92972 0.97090 0.97493 1.20530 0.95326 0.95613 1.10997 1.17318 0.80331 0.94415 0.99731 1.43057 1.08317 1.27261 1.49514 1.16255 0.82290 0.83156 0.80109 1.90931 1.63418 1.36622 1.45793 1.23481 0.94501 0.89620 0.95928 1.76786 0.89076 1.19931 1.19764 1.49323 1.03467 1.28592 1.46880 1.21804 0.76898 0.95047 1.02555 1.22436 0.98713 0.99205 1.00269 1.21775 0.91257 0.98251 0.94213 1.72955 0.96100 1.32993 1.34821 1.20006 0.87180 0.84702 0.88799 1.42036 1.02781 1.30533 1.49336 1.20813 0.94393 0.97236 1.14533 0.91977 0.86159 0.86339 0.86247 0.74516 0.88462 0.90014 0.90545 0.88523 0.89249 0.92031 0.70639 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.86 29.55 -169.99 -5.02 14.84 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.39 -10.54 9.44 30.88 0.29 -10.24 16 8 H 0.09 2.24 5.30 -52.49 -0.28 1.96 16 9 O -0.17 -4.74 9.76 0.03 0.00 -4.74 16 10 C 0.17 3.87 6.64 -39.14 -0.26 3.61 16 11 C -0.19 -3.91 9.99 -39.35 -0.39 -4.30 16 12 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 13 C -0.20 -3.60 8.65 -39.34 -0.34 -3.94 16 14 C 0.17 3.12 6.26 -83.75 -0.52 2.59 16 15 N -0.64 -9.23 5.33 -10.90 -0.06 -9.29 16 16 C 0.60 8.48 7.54 -12.59 -0.09 8.39 16 17 O -0.50 -8.10 14.81 5.25 0.08 -8.02 16 18 C 0.25 3.05 8.02 -153.06 -1.23 1.82 16 19 N -0.23 -2.77 12.21 32.65 0.40 -2.37 16 20 N -0.47 -5.16 4.12 -61.49 -0.25 -5.42 16 21 C 0.16 1.14 7.42 -3.62 -0.03 1.12 16 22 C -0.17 -1.01 6.12 -26.40 -0.16 -1.17 16 23 C 0.08 0.62 7.08 -3.93 -0.03 0.60 16 24 N -0.62 -7.33 11.08 -61.79 -0.68 -8.02 16 25 C 0.56 6.61 8.73 -320.86 -2.80 3.81 16 26 N -0.61 -6.93 6.22 -11.12 -0.07 -7.00 16 27 C -0.25 -5.09 9.05 -39.20 -0.35 -5.44 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.12 2.01 6.45 -52.48 -0.34 1.67 16 32 H 0.42 5.18 8.48 -40.82 -0.35 4.83 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.45 4.40 8.96 -40.82 -0.37 4.03 16 40 H 0.13 2.68 5.71 -52.49 -0.30 2.38 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -32.43 346.71 -10.19 -42.61 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.15 Total: 9.68 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -6.41 Total: -3.68 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.09 Total: -55.91 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.43 -10.19 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822400906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.099 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds