Wall clock time and date at job start Tue Mar 31 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34847 * 125.52741 * 2 1 4 4 C 1.36559 * 108.61564 * 179.89341 * 3 2 1 5 5 C 1.48503 * 126.28368 * 180.18282 * 4 3 2 6 6 N 1.34039 * 126.67451 * 179.90606 * 5 4 3 7 7 N 1.28978 * 107.27265 * 179.86686 * 6 5 4 8 8 N 1.28730 * 108.94049 * 0.40091 * 7 6 5 9 9 H 0.97003 * 125.34712 * 179.76930 * 8 7 6 10 10 N 1.28868 * 109.31432 * 359.73963 * 8 7 6 11 11 C 1.40805 * 107.43088 * 0.36098 * 4 3 2 12 12 C 1.36662 * 107.05437 * 359.78109 * 11 4 3 13 13 C 1.46729 * 126.02371 * 179.97438 * 12 11 4 14 14 O 1.21698 * 119.99779 * 156.93788 * 13 12 11 15 15 N 1.34773 * 120.00154 * 336.93952 * 13 12 11 16 16 C 1.46502 * 120.00188 * 183.79790 * 15 13 12 17 17 C 1.50699 * 109.47112 * 90.00374 * 16 15 13 18 18 H 1.07997 * 119.99796 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00183 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00346 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00002 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46962 * 90.00291 * 21 19 17 23 23 H 1.48501 * 109.47613 * 210.00248 * 21 19 17 24 24 H 1.48502 * 109.47014 * 330.00354 * 21 19 17 25 25 C 1.46507 * 119.99824 * 3.80392 * 15 13 12 26 26 C 1.52999 * 109.47109 * 84.60522 * 25 15 13 27 27 C 1.47199 * 109.46735 * 185.93929 * 26 25 15 28 28 N 6.28834 * 157.50716 * 188.92051 * 2 1 3 29 29 H 1.09004 * 109.47203 * 264.25499 * 1 2 3 30 30 H 1.09001 * 109.46960 * 144.25984 * 1 2 3 31 31 H 1.09000 * 109.47144 * 24.25818 * 1 2 3 32 32 H 1.08008 * 125.68772 * 359.97438 * 3 2 1 33 33 H 1.08003 * 126.46892 * 179.80588 * 11 4 3 34 34 H 1.09006 * 109.47078 * 210.00555 * 16 15 13 35 35 H 1.09000 * 109.47119 * 329.99971 * 16 15 13 36 36 H 0.97004 * 120.00258 * 179.97438 * 20 19 17 37 37 H 1.09002 * 109.46930 * 204.60640 * 25 15 13 38 38 H 1.08995 * 109.46717 * 324.60225 * 25 15 13 39 39 H 1.08993 * 109.47050 * 305.93850 * 26 25 15 40 40 H 1.08999 * 109.47000 * 65.94355 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2485 1.0974 0.0000 4 6 3.5551 0.7002 0.0024 5 6 4.7441 1.5898 0.0071 6 7 6.0291 1.2087 0.0112 7 7 6.7465 2.2806 0.0115 8 7 5.9671 3.3050 0.0163 9 1 6.2569 4.2307 0.0207 10 7 4.7411 2.9079 0.0136 11 6 3.5678 -0.7078 -0.0045 12 6 2.2650 -1.1204 -0.0059 13 6 1.8007 -2.5123 -0.0131 14 8 0.6885 -2.7848 0.3990 15 7 2.6058 -3.4889 -0.4760 16 6 2.1129 -4.8659 -0.5609 17 6 1.4832 -5.0917 -1.9113 18 1 1.4529 -4.2896 -2.6338 19 6 0.9450 -6.3219 -2.2240 20 7 0.3960 -6.5191 -3.4027 21 14 0.9969 -7.7091 -0.9740 22 1 -0.2270 -7.6645 -0.1341 23 1 1.0635 -9.0122 -1.6830 24 1 2.1954 -7.5533 -0.1111 25 6 3.9741 -3.1736 -0.8941 26 6 4.8955 -3.1826 0.3273 27 6 6.2385 -2.7277 -0.0680 28 7 7.2749 -2.3766 -0.3730 29 1 -0.3634 -0.1029 1.0225 30 1 -0.3633 -0.8341 -0.6003 31 1 -0.3633 0.9369 -0.4222 32 1 1.9007 2.1200 -0.0004 33 1 4.4422 -1.3418 -0.0077 34 1 2.9441 -5.5583 -0.4272 35 1 1.3704 -5.0348 0.2191 36 1 0.0176 -7.3847 -3.6228 37 1 4.3154 -3.9191 -1.6123 38 1 3.9941 -2.1871 -1.3572 39 1 4.4951 -2.5141 1.0894 40 1 4.9579 -4.1944 0.7278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822622285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:39 Heat of formation + Delta-G solvation = 198.760496 kcal Electronic energy + Delta-G solvation = -27725.666962 eV Core-core repulsion = 23774.352067 eV Total energy + Delta-G solvation = -3951.314894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.41237 -41.68098 -38.91248 -36.98593 -35.44555 -34.47644 -33.76766 -33.02755 -32.11967 -31.18115 -29.70769 -27.68181 -26.92244 -24.59523 -24.22896 -23.71468 -23.12884 -21.14071 -20.34013 -19.16916 -18.63679 -17.71526 -17.12083 -17.05258 -16.78797 -16.05890 -15.53341 -15.38109 -15.11325 -14.63706 -14.39570 -13.97396 -13.82667 -13.51593 -13.31677 -12.83504 -12.66868 -12.53748 -12.53367 -12.43175 -12.29590 -12.20143 -11.85008 -11.66506 -11.43490 -11.36215 -11.09233 -11.00310 -10.97058 -10.89069 -10.57627 -10.24359 -9.65064 -9.38750 -8.64982 -8.63910 -8.25496 -7.92961 -6.14082 -4.14371 0.99908 1.54756 1.74001 2.20473 2.58405 2.88611 2.97848 3.08732 3.26145 3.31703 3.33913 3.51581 3.68884 3.87513 4.21106 4.24200 4.34530 4.78370 4.87219 4.90296 5.07948 5.12699 5.19620 5.26721 5.30913 5.35542 5.47101 5.50829 5.64720 5.80341 5.85122 6.02297 6.14349 6.33026 6.45896 6.62081 6.82886 6.84184 7.04599 7.15047 7.51755 7.73517 7.98268 8.18692 8.37872 8.69405 8.89751 9.44895 10.98937 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.003718 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.757933 B = 7529.878941 C = 8827.749378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.402 5.402 3 C 0.065 3.935 4 C -0.120 4.120 5 C 0.266 3.734 6 N -0.266 5.266 7 N -0.054 5.054 8 N -0.236 5.236 9 H 0.472 0.528 10 N -0.311 5.311 11 C -0.135 4.135 12 C -0.025 4.025 13 C 0.581 3.419 14 O -0.536 6.536 15 N -0.574 5.574 16 C 0.216 3.784 17 C -0.534 4.534 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.895 5.895 21 Si 0.875 3.125 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.263 1.263 25 C 0.101 3.899 26 C -0.063 4.063 27 C 0.204 3.796 28 N -0.419 5.419 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.178 0.822 33 H 0.171 0.829 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.265 0.735 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 17.794 8.793 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.073 5.073 3 C -0.077 4.077 4 C -0.130 4.130 5 C -0.014 4.014 6 N -0.140 5.140 7 N -0.049 5.049 8 N -0.081 5.081 9 H 0.325 0.675 10 N -0.163 5.163 11 C -0.161 4.161 12 C -0.138 4.138 13 C 0.368 3.632 14 O -0.414 6.414 15 N -0.303 5.303 16 C 0.096 3.904 17 C -0.572 4.572 18 H 0.094 0.906 19 C -0.128 4.128 20 N -0.533 5.533 21 Si 0.701 3.299 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.188 1.188 25 C -0.025 4.025 26 C -0.104 4.104 27 C -0.115 4.115 28 N -0.096 5.096 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.195 0.805 33 H 0.188 0.812 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.860 18.051 8.435 21.072 hybrid contribution -0.723 -0.258 0.561 0.951 sum 6.136 17.793 8.996 20.861 Atomic orbital electron populations 1.22279 0.75134 1.04805 1.04804 1.43678 1.07358 1.04678 1.51566 1.21759 0.89196 0.91972 1.04747 1.16307 0.87432 0.91405 1.17874 1.22871 0.92286 0.86737 0.99479 1.76164 1.01325 1.18453 1.18010 1.78929 1.21299 0.89879 1.14790 1.47666 1.01435 1.12068 1.46936 0.67485 1.74884 1.03453 1.14016 1.23990 1.22025 0.96267 0.93571 1.04250 1.20105 0.89669 0.88584 1.15428 1.16862 0.84850 0.82821 0.78674 1.90801 1.19819 1.83221 1.47598 1.47575 1.11314 1.09821 1.61623 1.19819 0.95565 0.76162 0.98857 1.21296 1.38292 0.99001 0.98615 0.90557 1.24839 0.94440 0.98357 0.95203 1.69889 1.38527 1.24071 1.20807 0.86879 0.79359 0.81871 0.81758 1.19905 1.21101 1.18806 1.21827 0.81458 1.04595 0.94635 1.20082 0.84672 1.04517 1.01125 1.28787 0.94730 0.93848 0.94129 1.81215 1.12175 1.08320 1.07863 0.89803 0.88156 0.89651 0.80502 0.81174 0.94474 0.93900 0.92470 0.88015 0.88826 0.86635 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.25 59.84 0.61 1.36 16 2 N -0.40 -5.14 3.14 -120.43 -0.38 -5.52 16 3 C 0.06 0.72 11.30 -16.83 -0.19 0.53 16 4 C -0.12 -1.57 6.10 -105.30 -0.64 -2.21 16 5 C 0.27 3.51 8.18 -156.30 -1.28 2.23 16 6 N -0.27 -3.83 12.54 32.16 0.40 -3.43 16 7 N -0.05 -0.65 13.47 60.35 0.81 0.16 16 8 N -0.24 -2.06 7.90 60.35 0.48 -1.58 16 9 H 0.47 1.70 8.96 -340.37 -3.05 -1.35 16 10 N -0.31 -3.41 12.39 32.18 0.40 -3.01 16 11 C -0.14 -1.87 7.53 -39.18 -0.29 -2.16 16 12 C -0.02 -0.38 6.50 -82.38 -0.54 -0.91 16 13 C 0.58 10.70 7.46 -12.83 -0.10 10.60 16 14 O -0.54 -11.50 14.98 5.19 0.08 -11.42 16 15 N -0.57 -10.40 2.47 -176.58 -0.44 -10.83 16 16 C 0.22 4.67 4.23 -5.19 -0.02 4.65 16 17 C -0.53 -14.15 9.94 -34.44 -0.34 -14.49 16 18 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 21 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 25 C 0.10 1.44 4.91 -4.04 -0.02 1.42 16 26 C -0.06 -0.72 4.99 -29.52 -0.15 -0.87 16 27 C 0.20 2.70 14.44 -20.76 -0.30 2.40 16 28 N -0.42 -6.62 18.54 42.16 0.78 -5.83 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.32 7.27 -51.93 -0.38 0.94 16 31 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.17 2.25 2.34 -52.48 -0.12 2.13 16 34 H 0.04 0.74 7.13 -51.93 -0.37 0.37 16 35 H 0.04 0.99 6.80 -51.93 -0.35 0.63 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.10 1.46 8.03 -51.93 -0.42 1.05 16 38 H 0.09 1.32 5.21 -51.93 -0.27 1.05 16 39 H 0.12 1.24 6.24 -51.93 -0.32 0.91 16 40 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 349.69 15.07 5.27 5.27 Total: -1.00 -35.88 349.69 -6.41 -42.29 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.57 Total: -0.53 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -3.35 Total: 4.50 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 2.83 Total: -55.62 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.88 -6.41 -42.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822622285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.051 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds