Wall clock time and date at job start Tue Mar 31 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30453 * 125.98793 * 2 1 4 4 N 1.39934 * 108.89815 * 180.02562 * 3 2 1 5 5 C 1.46502 * 125.74942 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47229 * 304.97480 * 5 4 3 7 7 F 1.39908 * 109.46955 * 175.00216 * 6 5 4 8 8 F 1.39893 * 109.47408 * 294.99998 * 6 5 4 9 9 C 1.34258 * 108.49074 * 359.75314 * 4 3 2 10 10 C 1.38042 * 107.41787 * 0.39179 * 9 4 3 11 11 C 1.47426 * 126.41326 * 179.86869 * 10 9 4 12 12 O 1.21606 * 120.00115 * 179.69065 * 11 10 9 13 13 N 1.34773 * 120.00378 * 359.69431 * 11 10 9 14 14 C 1.47027 * 125.64611 * 359.97111 * 13 11 10 15 15 C 1.54326 * 107.27415 * 178.98073 * 14 13 11 16 16 C 1.55160 * 102.93981 * 337.80715 * 15 14 13 17 17 O 1.42891 * 111.00586 * 277.43132 * 16 15 14 18 18 C 1.50696 * 111.00455 * 153.61097 * 16 15 14 19 19 H 1.07998 * 120.00010 * 3.34989 * 18 16 15 20 20 C 1.37872 * 120.00324 * 183.34668 * 18 16 15 21 21 N 1.31515 * 119.99817 * 5.16915 * 20 18 16 22 22 Si 1.86801 * 120.00468 * 185.17011 * 20 18 16 23 23 H 1.48499 * 109.47349 * 84.98210 * 22 20 18 24 24 H 1.48500 * 109.47169 * 204.98683 * 22 20 18 25 25 H 1.48499 * 109.46786 * 324.98375 * 22 20 18 26 26 C 1.47529 * 125.64134 * 180.02562 * 13 11 10 27 27 H 1.09003 * 109.47044 * 269.99471 * 1 2 3 28 28 H 1.08996 * 109.47690 * 30.00155 * 1 2 3 29 29 H 1.09002 * 109.46913 * 149.99534 * 1 2 3 30 30 H 1.08997 * 109.47187 * 64.98218 * 5 4 3 31 31 H 1.08998 * 109.46427 * 184.97476 * 5 4 3 32 32 H 1.09000 * 109.46906 * 55.00457 * 6 5 4 33 33 H 1.08004 * 126.28725 * 180.24671 * 9 4 3 34 34 H 1.09001 * 109.88233 * 59.56305 * 14 13 11 35 35 H 1.09002 * 109.88130 * 298.40005 * 14 13 11 36 36 H 1.08994 * 110.72103 * 219.44841 * 15 14 13 37 37 H 1.08999 * 110.71707 * 96.16646 * 15 14 13 38 38 H 0.96700 * 114.00352 * 170.20655 * 17 16 15 39 39 H 0.97004 * 120.00275 * 180.02562 * 21 20 18 40 40 H 1.08993 * 110.36909 * 85.26750 * 26 13 11 41 41 H 1.08997 * 110.40302 * 322.91297 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6443 -0.0006 5 6 4.7786 1.5293 -0.0003 6 6 4.6853 2.4971 -1.1815 7 9 5.7391 3.4151 -1.1165 8 9 4.7652 1.7796 -2.3797 9 6 3.6439 -0.6978 0.0045 10 6 2.3373 -1.1432 -0.0006 11 6 1.8917 -2.5485 -0.0005 12 8 0.7040 -2.8098 0.0003 13 7 2.8005 -3.5437 -0.0011 14 6 4.2606 -3.3707 -0.0026 15 6 4.8890 -4.7799 0.0233 16 6 3.7511 -5.6571 0.6091 17 8 3.7292 -5.5820 2.0358 18 6 3.8788 -7.0861 0.1480 19 1 4.7195 -7.3840 -0.4609 20 6 2.9224 -8.0133 0.5036 21 7 1.8475 -7.6314 1.1582 22 14 3.1532 -9.8121 0.0557 23 1 3.9808 -10.4783 1.0932 24 1 1.8276 -10.4768 -0.0222 25 1 3.8347 -9.9111 -1.2599 26 6 2.4949 -4.9869 -0.0016 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 4.8059 2.0944 0.9313 31 1 5.6865 0.9328 -0.0900 32 1 3.7357 3.0305 -1.1400 33 1 4.5299 -1.3156 0.0092 34 1 4.5685 -2.8112 0.8807 35 1 4.5704 -2.8431 -0.9048 36 1 5.7643 -4.8000 0.6725 37 1 5.1472 -5.1056 -0.9843 38 1 2.9504 -5.9892 2.4393 39 1 1.1748 -8.2838 1.4087 40 1 2.3335 -5.3402 -1.0200 41 1 1.6191 -5.1901 0.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823528281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:35 Heat of formation + Delta-G solvation = -101.133836 kcal Electronic energy + Delta-G solvation = -28665.309933 eV Core-core repulsion = 24218.008707 eV Total energy + Delta-G solvation = -4447.301226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.44100 -47.44338 -41.53418 -39.08668 -37.09954 -34.67326 -34.32841 -32.24203 -31.36399 -30.35717 -29.78490 -27.82961 -27.38311 -25.18759 -23.95629 -23.12304 -21.44313 -20.45939 -19.57521 -19.08842 -18.09339 -17.83354 -17.19688 -17.06182 -16.44994 -15.95110 -15.41520 -15.28573 -14.81666 -14.61505 -14.36739 -14.28274 -14.15142 -13.79988 -13.64614 -13.29496 -13.10644 -13.03286 -12.92108 -12.69727 -12.39301 -12.12931 -11.93333 -11.64676 -11.60370 -11.40169 -11.03757 -10.93930 -10.80371 -10.62926 -10.46908 -10.23154 -9.49309 -9.43414 -9.30705 -8.72867 -8.70708 -8.37587 -7.79555 -6.28716 -4.37985 1.42116 1.91990 2.20523 3.08898 3.20725 3.28326 3.29844 3.67475 3.73597 3.82932 3.90564 4.17751 4.26131 4.43846 4.53624 4.73848 4.82970 4.96128 5.11349 5.24665 5.29336 5.48988 5.51535 5.70743 5.76575 5.86629 5.90673 6.04812 6.17186 6.43119 6.53210 6.56353 6.67361 6.82790 6.99503 7.21330 7.33628 7.46109 7.72994 8.00993 8.23834 8.64551 8.81443 9.27553 9.34988 10.78355 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.003029 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.967085 B = 9241.245805 C =10110.456188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.141 3.859 3 N -0.311 5.311 4 N -0.374 5.374 5 C 0.089 3.911 6 C 0.255 3.745 7 F -0.197 7.197 8 F -0.197 7.197 9 C 0.094 3.906 10 C -0.267 4.267 11 C 0.597 3.403 12 O -0.549 6.549 13 N -0.606 5.606 14 C 0.097 3.903 15 C -0.119 4.119 16 C 0.249 3.751 17 O -0.582 6.582 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.073 3.927 21 N -0.891 5.891 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.097 3.903 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.196 0.804 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.380 0.620 39 H 0.270 0.730 40 H 0.061 0.939 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.415 17.843 -2.221 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 N -0.132 5.132 4 N -0.153 5.153 5 C -0.034 4.034 6 C 0.200 3.800 7 F -0.178 7.178 8 F -0.178 7.178 9 C -0.054 4.054 10 C -0.282 4.282 11 C 0.386 3.614 12 O -0.428 6.428 13 N -0.339 5.339 14 C -0.026 4.026 15 C -0.156 4.156 16 C 0.208 3.792 17 O -0.390 6.390 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.131 4.131 21 N -0.529 5.529 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.024 4.024 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.212 0.788 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.230 0.770 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.318 19.361 -2.277 20.207 hybrid contribution -0.088 -2.079 -0.197 2.090 sum 5.230 17.282 -2.474 18.224 Atomic orbital electron populations 1.20365 0.85415 1.04079 1.03678 1.22490 0.97277 0.88632 0.94297 1.77039 0.85532 1.22860 1.27803 1.47929 1.05232 1.04649 1.57484 1.22681 0.86936 0.93992 0.99818 1.22108 0.90620 0.85231 0.82036 1.93021 1.60977 1.67397 1.96415 1.93039 1.97059 1.79096 1.48627 1.23973 1.00238 0.84190 0.96985 1.20452 0.91808 0.95119 1.20777 1.16801 0.85051 0.82631 0.76902 1.90717 1.15840 1.83894 1.52378 1.48605 1.05736 1.08158 1.71365 1.22263 0.81733 0.99543 0.99103 1.22649 0.99169 0.92397 1.01424 1.19621 0.88078 0.92241 0.79234 1.86104 1.49401 1.82523 1.20973 1.21428 1.09256 0.93157 1.33888 0.91573 1.25060 0.94311 0.99665 0.94053 1.69734 1.08930 1.35102 1.39124 0.86433 0.77551 0.84000 0.78986 1.20340 1.21088 1.19784 1.23324 1.02463 0.75139 1.01447 0.90093 0.91214 0.88281 0.86254 0.85941 0.85771 0.78753 0.92122 0.92577 0.90636 0.90242 0.76986 0.91993 0.92036 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 9.92 36.00 0.36 -0.66 16 2 C 0.14 2.12 7.26 -82.02 -0.60 1.53 16 3 N -0.31 -4.21 12.24 33.90 0.42 -3.79 16 4 N -0.37 -4.25 3.63 -60.81 -0.22 -4.47 16 5 C 0.09 0.62 6.68 -4.04 -0.03 0.60 16 6 C 0.25 1.99 5.42 37.15 0.20 2.19 16 7 F -0.20 -1.60 17.34 2.25 0.04 -1.56 16 8 F -0.20 -2.11 17.32 2.25 0.04 -2.07 16 9 C 0.09 1.21 9.92 -16.56 -0.16 1.04 16 10 C -0.27 -4.35 6.10 -105.07 -0.64 -4.99 16 11 C 0.60 11.93 7.85 -12.52 -0.10 11.83 16 12 O -0.55 -12.51 15.18 5.27 0.08 -12.43 16 13 N -0.61 -12.07 3.33 -171.69 -0.57 -12.64 16 14 C 0.10 1.56 4.98 -3.06 -0.02 1.55 16 15 C -0.12 -2.19 6.13 -24.89 -0.15 -2.34 16 16 C 0.25 5.77 0.86 -89.62 -0.08 5.69 16 17 O -0.58 -14.24 13.14 -35.23 -0.46 -14.70 16 18 C -0.54 -13.63 8.25 -34.44 -0.28 -13.92 16 19 H 0.07 1.64 7.79 -52.49 -0.41 1.23 16 20 C 0.07 1.86 5.31 -17.82 -0.09 1.77 16 21 N -0.89 -23.33 10.76 55.43 0.60 -22.73 16 22 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 C 0.10 2.26 5.42 -2.47 -0.01 2.25 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.49 6.55 -51.93 -0.34 1.15 16 30 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.12 0.58 8.06 -51.93 -0.42 0.16 16 32 H 0.12 0.89 8.04 -51.93 -0.42 0.47 16 33 H 0.20 2.01 4.42 -52.48 -0.23 1.78 16 34 H 0.06 0.88 6.83 -51.93 -0.35 0.52 16 35 H 0.06 0.74 7.03 -51.93 -0.36 0.38 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 38 H 0.38 9.63 7.59 45.56 0.35 9.97 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 41 H 0.09 2.32 7.36 -51.93 -0.38 1.93 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -31.10 348.50 -5.69 -36.79 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.23 Total: 10.81 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -1.61 Total: 6.53 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.22 Total: -43.63 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.38 Total: -27.14 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.10 -5.69 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.343 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds