Wall clock time and date at job start Tue Mar 31 2020 05:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00428 * 2 1 4 4 H 1.48503 * 109.47044 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46891 * 120.00151 * 3 2 1 6 6 H 1.48498 * 109.47346 * 240.00419 * 3 2 1 7 7 C 1.38948 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00404 * 175.19602 * 7 2 1 9 9 N 1.37095 * 120.00085 * 355.19478 * 7 2 1 10 10 C 1.34777 * 120.00070 * 145.25916 * 9 7 2 11 11 O 1.21297 * 120.00229 * 4.76053 * 10 9 7 12 12 C 1.50706 * 119.99972 * 184.76447 * 10 9 7 13 13 H 1.09004 * 109.47061 * 310.42662 * 12 10 9 14 14 O 1.42907 * 109.47085 * 190.43439 * 12 10 9 15 15 C 1.50693 * 109.47543 * 70.42886 * 12 10 9 16 16 C 1.38316 * 119.87949 * 77.22048 * 15 12 10 17 17 C 1.38032 * 120.11907 * 179.77113 * 16 15 12 18 18 C 1.39304 * 119.87677 * 0.48066 * 17 16 15 19 19 C 1.48462 * 120.11582 * 179.79229 * 18 17 16 20 20 N 1.34048 * 126.67361 * 180.02562 * 19 18 17 21 21 N 1.28990 * 107.26737 * 179.97438 * 20 19 18 22 22 N 1.28733 * 108.94339 * 0.02562 * 21 20 19 23 23 H 0.96993 * 125.33416 * 179.97438 * 22 21 20 24 24 N 1.28873 * 109.31681 * 359.74614 * 22 21 20 25 25 C 1.39292 * 119.76752 * 359.77444 * 18 17 16 26 26 C 1.38032 * 119.88127 * 359.97438 * 25 18 17 27 27 C 1.46502 * 119.99924 * 325.26565 * 9 7 2 28 28 C 1.52996 * 117.49614 * 313.91530 * 27 9 7 29 29 C 1.52999 * 117.49475 * 245.29197 * 27 9 7 30 30 H 0.97002 * 119.99358 * 355.02165 * 1 2 3 31 31 H 0.96706 * 113.99358 * 299.99474 * 14 12 10 32 32 H 1.08004 * 119.94494 * 0.02562 * 16 15 12 33 33 H 1.07998 * 120.06643 * 180.25360 * 17 16 15 34 34 H 1.08008 * 120.06314 * 180.02562 * 25 18 17 35 35 H 1.08000 * 119.94010 * 180.02562 * 26 25 18 36 36 H 1.09000 * 115.55242 * 99.62506 * 27 9 7 37 37 H 1.09001 * 117.49915 * 359.97438 * 28 27 9 38 38 H 1.09002 * 117.49574 * 145.02559 * 28 27 9 39 39 H 1.08996 * 117.50343 * 214.97584 * 29 27 9 40 40 H 1.09004 * 117.50309 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 1.2832 2.7464 0.0006 5 1 3.1020 1.6962 1.2125 6 1 3.1019 1.6963 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0860 -1.2051 -0.0789 9 7 1.3269 -2.3886 0.0984 10 6 1.7726 -3.4791 -0.5562 11 8 2.8225 -3.4359 -1.1622 12 6 0.9666 -4.7524 -0.5352 13 1 0.6929 -4.9922 0.4922 14 8 1.7458 -5.8184 -1.0817 15 6 -0.2824 -4.5699 -1.3583 16 6 -0.2104 -4.6141 -2.7389 17 6 -1.3521 -4.4523 -3.4976 18 6 -2.5768 -4.2342 -2.8706 19 6 -3.8074 -4.0549 -3.6815 20 7 -5.0467 -3.8385 -3.2187 21 7 -5.8255 -3.7387 -4.2421 22 7 -5.1276 -3.8835 -5.3141 23 1 -5.4759 -3.8517 -6.2188 24 7 -3.8930 -4.0726 -4.9967 25 6 -2.6428 -4.1854 -1.4801 26 6 -1.4958 -4.3536 -0.7308 27 6 0.1137 -2.4696 0.9155 28 6 0.1591 -1.8448 2.3114 29 6 0.1549 -3.3668 2.1542 30 1 -0.4849 0.8369 0.0729 31 1 2.0253 -5.6727 -1.9959 32 1 0.7402 -4.7796 -3.2242 33 1 -1.2955 -4.4911 -4.5754 34 1 -3.5899 -4.0170 -0.9889 35 1 -1.5459 -4.3163 0.3474 36 1 -0.8269 -2.4109 0.3678 37 1 1.0917 -1.3738 2.6218 38 1 -0.7518 -1.3747 2.6822 39 1 -0.7585 -3.8979 2.4217 40 1 1.0849 -3.8964 2.3614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826382021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:36 Heat of formation + Delta-G solvation = 106.992293 kcal Electronic energy + Delta-G solvation = -28158.578295 eV Core-core repulsion = 24170.991282 eV Total energy + Delta-G solvation = -3987.587013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.49021 -39.95799 -38.36463 -36.71700 -35.51402 -34.39584 -33.56008 -33.05861 -31.41053 -30.84776 -30.64407 -27.25100 -24.93865 -24.71544 -23.55169 -22.43943 -21.80527 -21.28441 -21.05681 -19.40367 -19.18345 -17.35895 -17.18169 -16.92107 -16.59962 -15.90875 -15.49360 -15.10579 -14.75498 -14.26196 -14.06018 -13.88668 -13.52128 -13.39508 -13.04963 -13.04302 -12.72281 -12.53551 -12.18712 -11.98765 -11.49550 -11.43029 -11.30967 -11.22710 -11.06147 -10.87560 -10.79749 -10.71815 -10.60069 -10.38478 -10.27543 -9.82882 -9.45439 -8.92787 -8.72751 -8.70528 -8.05752 -7.63900 -6.30417 -4.01008 0.75027 1.16905 1.59856 2.16501 2.38947 3.17594 3.23883 3.26785 3.65097 3.71658 3.97196 4.07905 4.17995 4.58609 4.60074 4.94090 4.95843 5.02632 5.12574 5.17578 5.29367 5.41163 5.51987 5.57873 5.65607 5.72189 5.89002 5.94349 5.97755 6.13865 6.16877 6.22184 6.26201 6.51070 6.55210 6.67056 6.75700 6.86495 7.03523 7.11085 7.53799 7.87400 8.09496 8.15901 8.43185 9.11585 9.32877 9.87255 10.73522 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.004150 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.658819 B = 6745.482029 C = 7622.013416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.047 3.953 3 Si 0.919 3.081 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.316 4.316 8 H 0.092 0.908 9 N -0.409 5.409 10 C 0.439 3.561 11 O -0.574 6.574 12 C 0.129 3.871 13 H 0.123 0.877 14 O -0.540 6.540 15 C -0.069 4.069 16 C -0.108 4.108 17 C -0.075 4.075 18 C -0.029 4.029 19 C 0.231 3.769 20 N -0.268 5.268 21 N -0.054 5.054 22 N -0.232 5.232 23 H 0.474 0.526 24 N -0.298 5.298 25 C -0.070 4.070 26 C -0.103 4.103 27 C 0.119 3.881 28 C -0.142 4.142 29 C -0.233 4.233 30 H 0.268 0.732 31 H 0.377 0.623 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.111 -7.928 -5.046 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.159 4.159 3 Si 0.746 3.254 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.444 4.444 8 H 0.109 0.891 9 N -0.128 5.128 10 C 0.226 3.774 11 O -0.458 6.458 12 C 0.066 3.934 13 H 0.141 0.859 14 O -0.346 6.346 15 C -0.071 4.071 16 C -0.126 4.126 17 C -0.095 4.095 18 C -0.033 4.033 19 C -0.048 4.048 20 N -0.141 5.141 21 N -0.049 5.049 22 N -0.077 5.077 23 H 0.327 0.673 24 N -0.149 5.149 25 C -0.091 4.091 26 C -0.121 4.121 27 C 0.013 3.987 28 C -0.179 4.179 29 C -0.271 4.271 30 H 0.078 0.922 31 H 0.226 0.774 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.505 -7.881 -4.918 14.023 hybrid contribution 0.502 1.388 -0.998 1.781 sum -10.004 -6.493 -5.916 13.313 Atomic orbital electron populations 1.69852 1.05760 1.27814 1.46840 1.25328 0.95402 0.99365 0.95784 0.86120 0.79111 0.81077 0.79117 1.20949 1.19931 1.19805 1.19412 0.92039 0.81906 1.51037 0.89062 1.42967 1.22453 1.08507 1.38892 1.20619 0.88136 0.85854 0.82773 1.90541 1.24343 1.83856 1.47091 1.20843 0.87046 0.87817 0.97681 0.85923 1.86527 1.72564 1.41766 1.33703 1.20467 0.95183 0.97036 0.94425 1.20795 0.98344 1.00353 0.93145 1.20994 0.90827 0.97623 1.00079 1.17174 0.87601 1.06709 0.91777 1.23766 0.94047 1.00247 0.86767 1.76088 1.00183 1.17406 1.20424 1.78882 1.21967 1.15009 0.89079 1.47698 1.02919 1.45277 1.11821 0.67270 1.74943 1.01541 1.22163 1.16261 1.21070 0.99183 0.97019 0.91779 1.21013 0.91153 0.99434 1.00549 1.21487 0.90706 1.00712 0.85757 1.22728 1.02584 0.92441 1.00162 1.23639 1.02196 0.95049 1.06237 0.92206 0.77356 0.85371 0.85159 0.84665 0.84646 0.86723 0.88933 0.89554 0.89137 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.12 11.10 55.50 0.62 -21.51 16 2 C 0.05 1.20 4.97 -17.47 -0.09 1.11 16 3 Si 0.92 20.42 29.56 -169.99 -5.02 15.40 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.32 -8.48 8.58 -14.94 -0.13 -8.61 16 8 H 0.09 2.59 7.59 -52.48 -0.40 2.19 16 9 N -0.41 -9.90 2.89 -107.73 -0.31 -10.21 16 10 C 0.44 10.31 6.83 -10.98 -0.08 10.24 16 11 O -0.57 -15.39 16.12 -14.15 -0.23 -15.62 16 12 C 0.13 2.38 2.95 -29.04 -0.09 2.30 16 13 H 0.12 2.10 5.78 -51.93 -0.30 1.80 16 14 O -0.54 -9.65 12.91 -54.92 -0.71 -10.36 16 15 C -0.07 -1.17 4.66 -104.57 -0.49 -1.65 16 16 C -0.11 -1.71 9.26 -39.63 -0.37 -2.08 16 17 C -0.08 -1.10 9.70 -39.26 -0.38 -1.48 16 18 C -0.03 -0.44 5.88 -104.90 -0.62 -1.05 16 19 C 0.23 3.33 7.94 -156.30 -1.24 2.09 16 20 N -0.27 -3.89 12.23 32.16 0.39 -3.49 16 21 N -0.05 -0.66 13.47 60.35 0.81 0.16 16 22 N -0.23 -2.18 7.90 60.35 0.48 -1.71 16 23 H 0.47 1.99 8.96 -340.37 -3.05 -1.06 16 24 N -0.30 -3.70 12.08 32.17 0.39 -3.31 16 25 C -0.07 -1.04 9.70 -39.27 -0.38 -1.42 16 26 C -0.10 -1.58 7.35 -39.63 -0.29 -1.88 16 27 C 0.12 2.44 2.05 -67.93 -0.14 2.30 16 28 C -0.14 -2.73 9.00 -26.73 -0.24 -2.97 16 29 C -0.23 -3.88 7.94 -26.73 -0.21 -4.10 16 30 H 0.27 6.60 8.32 -40.82 -0.34 6.26 16 31 H 0.38 5.96 7.26 45.56 0.33 6.30 16 32 H 0.13 1.87 6.89 -52.48 -0.36 1.51 16 33 H 0.13 1.67 7.88 -52.49 -0.41 1.26 16 34 H 0.14 1.79 7.89 -52.48 -0.41 1.38 16 35 H 0.14 1.86 6.06 -52.49 -0.32 1.54 16 36 H 0.12 2.43 5.92 -51.93 -0.31 2.12 16 37 H 0.09 1.94 7.94 -51.93 -0.41 1.53 16 38 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.09 1.22 7.82 -51.93 -0.41 0.82 16 40 H 0.09 1.49 7.96 -51.93 -0.41 1.07 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -32.84 340.80 -9.20 -42.05 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.02 Total: 10.66 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -4.73 Total: -7.20 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 2.38 Total: -40.07 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.94 Total: -25.98 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.84 -9.20 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.040 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds