Wall clock time and date at job start Tue Mar 31 2020 05:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00428 * 2 1 4 4 H 1.48503 * 109.47044 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46891 * 120.00151 * 3 2 1 6 6 H 1.48498 * 109.47346 * 240.00419 * 3 2 1 7 7 C 1.38948 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00404 * 175.19602 * 7 2 1 9 9 N 1.37095 * 120.00085 * 355.19478 * 7 2 1 10 10 C 1.34777 * 120.00070 * 145.25916 * 9 7 2 11 11 O 1.21297 * 120.00229 * 4.76053 * 10 9 7 12 12 C 1.50706 * 119.99972 * 184.76447 * 10 9 7 13 13 H 1.09004 * 109.47061 * 310.42662 * 12 10 9 14 14 O 1.42907 * 109.47085 * 190.43439 * 12 10 9 15 15 C 1.50693 * 109.47543 * 70.42886 * 12 10 9 16 16 C 1.38316 * 119.87949 * 77.22048 * 15 12 10 17 17 C 1.38032 * 120.11907 * 179.77113 * 16 15 12 18 18 C 1.39304 * 119.87677 * 0.48066 * 17 16 15 19 19 C 1.48462 * 120.11582 * 179.79229 * 18 17 16 20 20 N 1.34048 * 126.67361 * 180.02562 * 19 18 17 21 21 N 1.28990 * 107.26737 * 179.97438 * 20 19 18 22 22 N 1.28733 * 108.94339 * 0.02562 * 21 20 19 23 23 H 0.96993 * 125.33416 * 179.97438 * 22 21 20 24 24 N 1.28873 * 109.31681 * 359.74614 * 22 21 20 25 25 C 1.39292 * 119.76752 * 359.77444 * 18 17 16 26 26 C 1.38032 * 119.88127 * 359.97438 * 25 18 17 27 27 C 1.46502 * 119.99924 * 325.26565 * 9 7 2 28 28 C 1.52996 * 117.49614 * 313.91530 * 27 9 7 29 29 C 1.52999 * 117.49475 * 245.29197 * 27 9 7 30 30 H 0.97002 * 119.99358 * 355.02165 * 1 2 3 31 31 H 0.96706 * 113.99358 * 299.99474 * 14 12 10 32 32 H 1.08004 * 119.94494 * 0.02562 * 16 15 12 33 33 H 1.07998 * 120.06643 * 180.25360 * 17 16 15 34 34 H 1.08008 * 120.06314 * 180.02562 * 25 18 17 35 35 H 1.08000 * 119.94010 * 180.02562 * 26 25 18 36 36 H 1.09000 * 115.55242 * 99.62506 * 27 9 7 37 37 H 1.09001 * 117.49915 * 359.97438 * 28 27 9 38 38 H 1.09002 * 117.49574 * 145.02559 * 28 27 9 39 39 H 1.08996 * 117.50343 * 214.97584 * 29 27 9 40 40 H 1.09004 * 117.50309 * 0.02562 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 1.2832 2.7464 0.0006 5 1 3.1020 1.6962 1.2125 6 1 3.1019 1.6963 -1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0860 -1.2051 -0.0789 9 7 1.3269 -2.3886 0.0984 10 6 1.7726 -3.4791 -0.5562 11 8 2.8225 -3.4359 -1.1622 12 6 0.9666 -4.7524 -0.5352 13 1 0.6929 -4.9922 0.4922 14 8 1.7458 -5.8184 -1.0817 15 6 -0.2824 -4.5699 -1.3583 16 6 -0.2104 -4.6141 -2.7389 17 6 -1.3521 -4.4523 -3.4976 18 6 -2.5768 -4.2342 -2.8706 19 6 -3.8074 -4.0549 -3.6815 20 7 -5.0467 -3.8385 -3.2187 21 7 -5.8255 -3.7387 -4.2421 22 7 -5.1276 -3.8835 -5.3141 23 1 -5.4759 -3.8517 -6.2188 24 7 -3.8930 -4.0726 -4.9967 25 6 -2.6428 -4.1854 -1.4801 26 6 -1.4958 -4.3536 -0.7308 27 6 0.1137 -2.4696 0.9155 28 6 0.1591 -1.8448 2.3114 29 6 0.1549 -3.3668 2.1542 30 1 -0.4849 0.8369 0.0729 31 1 2.0253 -5.6727 -1.9959 32 1 0.7402 -4.7796 -3.2242 33 1 -1.2955 -4.4911 -4.5754 34 1 -3.5899 -4.0170 -0.9889 35 1 -1.5459 -4.3163 0.3474 36 1 -0.8269 -2.4109 0.3678 37 1 1.0917 -1.3738 2.6218 38 1 -0.7518 -1.3747 2.6822 39 1 -0.7585 -3.8979 2.4217 40 1 1.0849 -3.8964 2.3614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826382021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:35 Heat of formation + Delta-G solvation = 84.251676 kcal Electronic energy + Delta-G solvation = -28159.564403 eV Core-core repulsion = 24170.991282 eV Total energy + Delta-G solvation = -3988.573121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.45894 -41.42493 -39.80162 -38.28226 -37.08992 -35.39737 -34.89389 -34.61841 -33.12018 -32.09566 -31.90544 -28.73538 -26.60406 -25.75701 -24.80427 -23.66837 -23.23093 -22.80575 -22.29218 -21.01044 -20.19236 -18.86622 -18.49486 -18.17291 -18.13693 -17.25767 -17.11748 -16.60201 -16.19835 -15.79651 -15.54725 -15.15370 -15.01404 -14.76056 -14.54856 -14.26058 -14.01238 -13.83815 -13.61570 -13.30109 -13.16776 -12.93246 -12.73976 -12.50321 -12.39798 -12.31917 -12.20653 -12.15125 -12.00092 -11.91255 -11.66345 -11.49264 -11.04349 -10.66838 -10.28084 -9.90766 -9.53231 -9.43386 -8.24458 -6.02287 -0.34669 0.16964 0.43933 1.26168 1.38453 1.41195 1.42674 1.48731 1.95030 2.26875 2.65315 2.75600 2.92821 3.00199 3.15476 3.23274 3.53142 3.69447 3.86930 3.95515 4.03023 4.18428 4.25410 4.31457 4.39541 4.44014 4.46259 4.61363 4.68713 4.80017 4.86886 5.06774 5.16971 5.31845 5.40227 5.42308 5.47137 5.50877 5.55577 5.62474 5.87465 6.15937 6.48253 6.62014 7.11261 7.19013 7.46446 8.01194 8.76213 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.004150 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.658819 B = 6745.482029 C = 7622.013416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.021 3.979 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.348 4.348 8 H 0.060 0.940 9 N -0.418 5.418 10 C 0.426 3.574 11 O -0.622 6.622 12 C 0.146 3.854 13 H 0.139 0.861 14 O -0.544 6.544 15 C -0.089 4.089 16 C -0.119 4.119 17 C -0.076 4.076 18 C -0.031 4.031 19 C 0.214 3.786 20 N -0.290 5.290 21 N -0.056 5.056 22 N -0.200 5.200 23 H 0.494 0.506 24 N -0.296 5.296 25 C -0.074 4.074 26 C -0.102 4.102 27 C 0.097 3.903 28 C -0.150 4.150 29 C -0.193 4.193 30 H 0.271 0.729 31 H 0.385 0.615 32 H 0.132 0.868 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 -8.288 -5.017 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.184 4.184 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.476 4.476 8 H 0.078 0.922 9 N -0.136 5.136 10 C 0.215 3.785 11 O -0.510 6.510 12 C 0.084 3.916 13 H 0.157 0.843 14 O -0.350 6.350 15 C -0.091 4.091 16 C -0.137 4.137 17 C -0.097 4.097 18 C -0.035 4.035 19 C -0.065 4.065 20 N -0.162 5.162 21 N -0.050 5.050 22 N -0.051 5.051 23 H 0.354 0.646 24 N -0.149 5.149 25 C -0.093 4.093 26 C -0.119 4.119 27 C -0.008 4.008 28 C -0.188 4.188 29 C -0.231 4.231 30 H 0.081 0.919 31 H 0.235 0.765 32 H 0.150 0.850 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.153 0.847 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.719 -8.246 -4.885 15.925 hybrid contribution 1.105 1.497 -1.142 2.183 sum -11.614 -6.748 -6.027 14.722 Atomic orbital electron populations 1.69911 1.06208 1.28474 1.46285 1.25843 0.96193 1.01247 0.95068 0.85352 0.78251 0.78208 0.78687 1.19602 1.19354 1.20832 1.19300 0.91232 0.83921 1.53143 0.92164 1.43133 1.23122 1.07911 1.39468 1.21577 0.87887 0.87367 0.81674 1.90491 1.26501 1.85114 1.48854 1.20660 0.86862 0.85052 0.99035 0.84347 1.86494 1.72714 1.41356 1.34427 1.20391 0.94901 0.99119 0.94670 1.20961 0.99058 1.00532 0.93191 1.21131 0.90402 0.97292 1.00827 1.17361 0.88014 1.05864 0.92218 1.23703 0.93982 1.01511 0.87333 1.76067 1.00338 1.18360 1.21471 1.78826 1.21752 1.15148 0.89322 1.47759 1.01930 1.42856 1.12563 0.64647 1.74901 1.02596 1.21842 1.15531 1.21257 0.99582 0.96676 0.91834 1.21183 0.90638 0.98630 1.01488 1.21511 0.89007 1.04155 0.86096 1.22706 1.02032 0.94667 0.99396 1.23721 1.04148 0.93614 1.01638 0.91924 0.76505 0.85031 0.83631 0.83248 0.82966 0.87110 0.91441 0.88116 0.84676 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.33 11.10 21.66 0.24 -44.09 16 2 C 0.02 1.10 4.97 84.93 0.42 1.52 16 3 Si 0.97 42.19 29.56 68.60 2.03 44.22 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.35 -19.27 8.58 84.04 0.72 -18.55 16 8 H 0.06 3.62 7.59 -2.91 -0.02 3.60 16 9 N -0.42 -20.58 2.89 -613.12 -1.77 -22.35 16 10 C 0.43 20.44 6.83 87.66 0.60 21.04 16 11 O -0.62 -34.72 16.12 15.74 0.25 -34.47 16 12 C 0.15 5.34 2.95 29.10 0.09 5.43 16 13 H 0.14 4.51 5.78 -2.39 -0.01 4.50 16 14 O -0.54 -19.28 12.91 -130.16 -1.68 -20.96 16 15 C -0.09 -2.92 4.66 -19.83 -0.09 -3.01 16 16 C -0.12 -3.73 9.26 22.24 0.21 -3.52 16 17 C -0.08 -2.17 9.70 22.48 0.22 -1.95 16 18 C -0.03 -0.89 5.88 -20.04 -0.12 -1.01 16 19 C 0.21 5.81 7.94 137.38 1.09 6.90 16 20 N -0.29 -7.90 12.23 -52.18 -0.64 -8.54 16 21 N -0.06 -1.23 13.47 37.02 0.50 -0.73 16 22 N -0.20 -3.27 7.90 37.02 0.29 -2.98 16 23 H 0.49 2.74 8.96 -347.54 -3.12 -0.38 16 24 N -0.30 -6.72 12.08 -52.13 -0.63 -7.34 16 25 C -0.07 -2.04 9.70 22.47 0.22 -1.82 16 26 C -0.10 -2.93 7.35 22.24 0.16 -2.77 16 27 C 0.10 3.89 2.05 44.99 0.09 3.98 16 28 C -0.15 -5.63 9.00 30.59 0.28 -5.35 16 29 C -0.19 -5.96 7.94 30.60 0.24 -5.72 16 30 H 0.27 13.12 8.32 -92.71 -0.77 12.35 16 31 H 0.38 12.32 7.26 -74.05 -0.54 11.78 16 32 H 0.13 3.88 6.89 -2.91 -0.02 3.86 16 33 H 0.15 3.55 7.88 -2.91 -0.02 3.53 16 34 H 0.15 3.66 7.89 -2.91 -0.02 3.64 16 35 H 0.15 3.74 6.06 -2.91 -0.02 3.72 16 36 H 0.11 4.55 5.92 -2.39 -0.01 4.53 16 37 H 0.07 2.85 7.94 -2.39 -0.02 2.83 16 38 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.14 2.99 7.82 -2.39 -0.02 2.98 16 40 H 0.08 2.71 7.96 -2.38 -0.02 2.69 16 Total: -1.00 -72.31 340.80 0.20 -72.10 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -2.51 Total: 29.95 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 4.12 Total: -4.82 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.01 Total: -86.03 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -1.43 Total: -55.43 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -72.31 0.20 -72.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826382021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.356 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds