Wall clock time and date at job start Tue Mar 31 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99627 * 2 1 4 4 C 1.53004 * 109.46573 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47016 * 65.00393 * 4 3 2 6 6 C 1.37093 * 119.99774 * 264.54434 * 5 4 3 7 7 H 1.08002 * 119.99917 * 145.65406 * 6 5 4 8 8 C 1.38956 * 120.00145 * 325.65430 * 6 5 4 9 9 N 1.31405 * 119.99821 * 338.16068 * 8 6 5 10 10 Si 1.86802 * 119.99967 * 158.15781 * 8 6 5 11 11 H 1.48499 * 109.46868 * 90.00153 * 10 8 6 12 12 H 1.48500 * 109.47003 * 209.99950 * 10 8 6 13 13 H 1.48498 * 109.47338 * 330.00052 * 10 8 6 14 14 C 1.34773 * 120.00083 * 84.54861 * 5 4 3 15 15 O 1.21289 * 120.00497 * 359.97438 * 14 5 4 16 16 C 1.50702 * 120.00030 * 179.97438 * 14 5 4 17 17 C 1.52997 * 109.47410 * 180.02562 * 16 14 5 18 18 N 1.46499 * 109.47463 * 180.02562 * 17 16 14 19 19 C 1.34559 * 119.50694 * 269.98031 * 18 17 16 20 20 O 1.21243 * 120.01267 * 4.47244 * 19 18 17 21 21 C 1.50803 * 119.96872 * 184.45430 * 19 18 17 22 22 C 1.53351 * 109.08928 * 325.61070 * 21 19 18 23 23 N 1.46418 * 109.34927 * 46.99129 * 22 21 19 24 24 C 1.34292 * 120.92674 * 323.77658 * 23 22 21 25 25 S 1.71201 * 119.20581 * 185.96720 * 24 23 22 26 26 H 1.08994 * 109.46800 * 299.99927 * 1 2 3 27 27 H 1.08995 * 109.46746 * 60.00303 * 1 2 3 28 28 H 1.09001 * 109.46337 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47053 * 60.00196 * 3 2 1 30 30 H 1.08994 * 109.46999 * 299.99813 * 3 2 1 31 31 H 1.08995 * 109.47361 * 304.99552 * 4 3 2 32 32 H 1.09004 * 109.46783 * 184.99875 * 4 3 2 33 33 H 0.97003 * 120.00070 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47375 * 59.99591 * 16 14 5 35 35 H 1.09010 * 109.46998 * 299.99931 * 16 14 5 36 36 H 1.08996 * 109.47589 * 59.99409 * 17 16 14 37 37 H 1.09002 * 109.46882 * 299.99555 * 17 16 14 38 38 H 1.09005 * 109.51748 * 85.67461 * 21 19 18 39 39 H 1.08999 * 109.52248 * 205.79285 * 21 19 18 40 40 H 1.09000 * 109.64371 * 286.97375 * 22 21 19 41 41 H 1.09003 * 109.45393 * 166.89659 * 22 21 19 42 42 H 0.96994 * 119.53009 * 144.05086 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2056 -0.7866 -1.3027 7 1 3.9868 -1.3371 -2.2058 8 6 4.7192 -1.4474 -0.1934 9 7 5.3770 -0.7760 0.7248 10 14 4.4744 -3.2899 -0.0076 11 1 5.6061 -4.0067 -0.6485 12 1 4.4205 -3.6391 1.4347 13 1 3.2021 -3.6887 -0.6614 14 6 4.1576 1.3210 -2.3513 15 8 3.9547 2.5159 -2.3056 16 6 4.6120 0.6826 -3.6386 17 6 4.7388 1.7548 -4.7226 18 7 5.1800 1.1342 -5.9742 19 6 6.4960 1.0308 -6.2348 20 8 7.3079 1.3751 -5.4027 21 6 6.9606 0.4862 -7.5621 22 6 5.9796 -0.5949 -8.0317 23 7 4.6084 -0.1039 -7.8816 24 6 4.2645 0.6771 -6.8446 25 16 2.6199 1.0998 -6.6265 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5686 0.8427 32 1 3.9785 2.1766 0.0902 33 1 5.7353 -1.2372 1.4994 34 1 3.8830 -0.0654 -3.9504 35 1 5.5798 0.2050 -3.4854 36 1 5.4680 2.5025 -4.4106 37 1 3.7712 2.2327 -4.8759 38 1 6.9963 1.2928 -8.2943 39 1 7.9540 0.0518 -7.4500 40 1 6.1109 -1.4948 -7.4308 41 1 6.1696 -0.8271 -9.0796 42 1 3.9381 -0.3495 -8.5382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848213814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:11 Heat of formation + Delta-G solvation = -77.053818 kcal Electronic energy + Delta-G solvation = -26973.124097 eV Core-core repulsion = 23080.707446 eV Total energy + Delta-G solvation = -3892.416651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76534 -38.66371 -38.18469 -36.93138 -35.94158 -34.62573 -32.10457 -31.52726 -31.10870 -28.99288 -26.17588 -25.70136 -25.02354 -24.58329 -23.52030 -21.50108 -19.22599 -19.04973 -18.89174 -18.25250 -17.37078 -16.52657 -16.24928 -15.71095 -15.37037 -15.32239 -15.10126 -14.79878 -14.48075 -14.34834 -14.21820 -14.04392 -13.83078 -13.55480 -12.92662 -12.59024 -12.34064 -12.15539 -11.92860 -11.60939 -11.41085 -11.37909 -11.14346 -11.03854 -10.91009 -10.61424 -10.46011 -10.38299 -10.31638 -9.96928 -9.65965 -9.07931 -8.87665 -8.39404 -8.02156 -7.55402 -7.46242 -6.29742 -3.92784 0.54173 1.64666 2.19575 2.36068 2.63235 3.17206 3.28064 3.35398 3.78643 3.88581 3.94169 4.20391 4.36220 4.55779 4.59571 4.79072 4.83529 5.06131 5.12425 5.47345 5.51164 5.58006 5.74566 5.75849 5.83247 6.00164 6.08131 6.13852 6.21424 6.35109 6.46022 6.47471 6.51628 6.63927 6.80904 6.86720 7.34299 7.35206 7.52933 7.88118 8.06294 8.43390 9.16688 9.56999 9.99059 10.73109 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.004201 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.451272 B = 6663.404365 C = 7368.825540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.114 3.886 5 N -0.425 5.425 6 C -0.322 4.322 7 H 0.085 0.915 8 C 0.048 3.952 9 N -0.862 5.862 10 Si 0.913 3.087 11 H -0.281 1.281 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.477 3.523 15 O -0.609 6.609 16 C -0.124 4.124 17 C 0.107 3.893 18 N -0.527 5.527 19 C 0.505 3.495 20 O -0.466 6.466 21 C -0.160 4.160 22 C 0.089 3.911 23 N -0.669 5.669 24 C 0.558 3.442 25 S -0.576 6.576 26 H 0.029 0.971 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.268 0.732 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -2.049 -15.644 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.026 4.026 4 C -0.010 4.010 5 N -0.142 5.142 6 C -0.450 4.450 7 H 0.103 0.897 8 C -0.157 4.157 9 N -0.499 5.499 10 Si 0.740 3.260 11 H -0.208 1.208 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.265 3.735 15 O -0.497 6.497 16 C -0.165 4.165 17 C -0.014 4.014 18 N -0.251 5.251 19 C 0.289 3.711 20 O -0.335 6.335 21 C -0.200 4.200 22 C -0.039 4.039 23 N -0.303 5.303 24 C 0.206 3.794 25 S -0.443 6.443 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.149 0.851 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.108 0.892 41 H 0.131 0.869 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 1.449 -1.243 -14.731 14.854 hybrid contribution 0.294 -1.258 -0.206 1.308 sum 1.743 -2.500 -14.937 15.245 Atomic orbital electron populations 1.22639 0.83444 1.01663 0.98872 1.88124 1.17376 1.27806 1.95052 1.23040 0.96527 0.84295 0.98728 1.21484 0.89203 0.99049 0.91216 1.43282 1.56020 1.07284 1.07656 1.19255 1.42111 0.82120 1.01485 0.89715 1.25210 0.94067 0.99817 0.96609 1.69907 1.31180 1.37075 1.11764 0.86174 0.78814 0.83301 0.77741 1.20767 1.20773 1.19248 1.19905 0.81386 0.86209 0.85983 1.90526 1.57983 1.15178 1.85994 1.21491 1.03348 0.98227 0.93480 1.22203 1.05062 0.96076 0.78030 1.45929 1.05757 1.52846 1.20523 1.21172 0.81863 0.78125 0.89893 1.90836 1.52051 1.43440 1.47213 1.22344 1.02259 1.00805 0.94627 1.22070 0.80104 0.97044 1.04648 1.45313 1.12921 1.46884 1.25167 1.22357 0.94822 0.81299 0.80949 1.93702 0.95234 1.71349 1.83978 0.95234 0.94854 0.90521 0.94369 0.93868 0.86603 0.91256 0.92159 0.89769 0.89583 0.87979 0.85134 0.86625 0.85166 0.89185 0.86938 0.72257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.37 -8.18 10.44 -35.23 -0.37 -8.55 16 3 C 0.05 1.13 6.24 37.16 0.23 1.37 16 4 C 0.11 2.83 5.29 -4.04 -0.02 2.81 16 5 N -0.43 -11.05 2.51 -114.81 -0.29 -11.34 16 6 C -0.32 -8.45 8.48 -14.93 -0.13 -8.57 16 7 H 0.09 2.17 6.98 -52.49 -0.37 1.80 16 8 C 0.05 1.25 4.93 -17.47 -0.09 1.17 16 9 N -0.86 -23.25 11.34 55.50 0.63 -22.62 16 10 Si 0.91 20.41 29.61 -169.99 -5.03 15.38 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 C 0.48 11.93 7.60 -10.99 -0.08 11.85 16 15 O -0.61 -16.14 15.65 5.55 0.09 -16.06 16 16 C -0.12 -2.62 4.68 -27.88 -0.13 -2.75 16 17 C 0.11 1.97 4.22 -4.04 -0.02 1.95 16 18 N -0.53 -7.61 2.54 -117.51 -0.30 -7.90 16 19 C 0.50 6.40 7.47 -11.03 -0.08 6.32 16 20 O -0.47 -7.77 16.67 5.59 0.09 -7.68 16 21 C -0.16 -0.98 6.30 -27.65 -0.17 -1.16 16 22 C 0.09 0.39 7.26 -3.90 -0.03 0.36 16 23 N -0.67 -5.18 5.57 -62.14 -0.35 -5.52 16 24 C 0.56 7.28 7.52 -87.74 -0.66 6.62 16 25 S -0.58 -10.02 28.47 -107.50 -3.06 -13.08 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.12 3.05 5.37 -51.93 -0.28 2.77 16 32 H 0.07 1.71 7.59 -51.93 -0.39 1.32 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.08 1.77 7.65 -51.93 -0.40 1.38 16 35 H 0.09 1.86 8.10 -51.92 -0.42 1.44 16 36 H 0.10 1.99 7.41 -51.93 -0.38 1.60 16 37 H 0.13 2.60 6.18 -51.62 -0.32 2.28 16 38 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.11 0.07 8.14 -51.93 -0.42 -0.36 16 42 H 0.44 2.57 8.75 -40.82 -0.36 2.21 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -35.57 364.73 -9.01 -44.58 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.86 Total: 5.69 kcal Atomic # 6 Polarization: 21.67 SS G_CDS: -0.07 Total: 21.60 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.30 Total: -47.39 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.19 Total: -32.29 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Atomic # 16 Polarization: -10.02 SS G_CDS: -3.06 Total: -13.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.57 -9.01 -44.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848213814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.477 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds