Wall clock time and date at job start Tue Mar 31 2020 05:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38046 * 126.29290 * 2 1 4 4 C 1.47420 * 126.41458 * 0.02562 * 3 2 1 5 5 O 1.21604 * 120.00178 * 49.67124 * 4 3 2 6 6 N 1.34773 * 120.00131 * 229.66969 * 4 3 2 7 7 C 1.47213 * 120.81373 * 355.80552 * 6 4 3 8 8 C 1.53194 * 108.85174 * 126.33574 * 7 6 4 9 9 C 1.53043 * 109.31309 * 54.65654 * 8 7 6 10 10 H 1.09003 * 109.45794 * 58.64852 * 9 8 7 11 11 O 1.42896 * 109.44857 * 178.62003 * 9 8 7 12 12 C 1.53047 * 109.53566 * 298.63202 * 9 8 7 13 13 F 1.39894 * 109.49619 * 301.41162 * 12 9 8 14 14 F 1.39899 * 109.49613 * 181.31585 * 12 9 8 15 15 C 1.46930 * 120.63350 * 175.66300 * 6 4 3 16 16 C 1.41291 * 107.16936 * 179.75743 * 3 2 1 17 17 N 1.30445 * 108.02546 * 0.24435 * 16 3 2 18 18 N 1.34262 * 126.29039 * 180.17692 * 2 1 3 19 19 C 1.46504 * 125.75476 * 0.03646 * 18 2 1 20 20 C 1.50698 * 109.47044 * 270.27043 * 19 18 2 21 21 H 1.08004 * 119.99729 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00029 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00159 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00124 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47518 * 59.99417 * 24 22 20 26 26 H 1.48497 * 109.47127 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47064 * 299.99664 * 24 22 20 28 28 H 1.09007 * 109.47403 * 89.99880 * 1 2 3 29 29 H 1.08999 * 109.47442 * 210.00067 * 1 2 3 30 30 H 1.08997 * 109.47196 * 330.00002 * 1 2 3 31 31 H 1.09000 * 109.52948 * 6.53877 * 7 6 4 32 32 H 1.08998 * 109.67579 * 246.22657 * 7 6 4 33 33 H 1.08997 * 109.50072 * 294.70035 * 8 7 6 34 34 H 1.08999 * 109.49612 * 174.60554 * 8 7 6 35 35 H 0.96701 * 114.00189 * 300.05525 * 11 9 8 36 36 H 1.09001 * 109.58744 * 113.82415 * 15 6 4 37 37 H 1.08995 * 109.58555 * 353.54192 * 15 6 4 38 38 H 1.08002 * 125.98746 * 180.24072 * 16 3 2 39 39 H 1.09002 * 109.47027 * 30.27034 * 19 18 2 40 40 H 1.09003 * 109.47243 * 150.26777 * 19 18 2 41 41 H 0.97000 * 120.00007 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5202 0.0005 5 8 1.0547 2.8980 0.8038 6 7 2.4064 3.3884 -0.8892 7 6 3.4791 2.9739 -1.8083 8 6 3.0531 3.2970 -3.2439 9 6 2.6822 4.7786 -3.3406 10 1 3.5377 5.3870 -3.0471 11 8 2.3151 5.0905 -4.6859 12 6 1.5038 5.0730 -2.4093 13 9 0.4154 4.2695 -2.7652 14 9 1.1461 6.4209 -2.5206 15 6 1.9122 4.7701 -0.9642 16 6 3.6590 0.6498 0.0057 17 7 3.6340 -0.6544 0.0036 18 7 2.3016 -1.0822 -0.0033 19 6 1.8500 -2.4759 -0.0084 20 6 1.6880 -2.9566 1.4106 21 1 1.8999 -2.2904 2.2339 22 6 1.2694 -4.2467 1.6579 23 7 1.0110 -5.0578 0.6554 24 14 1.0680 -4.8424 3.4169 25 1 0.0629 -3.9995 4.1130 26 1 0.6115 -6.2554 3.4118 27 1 2.3701 -4.7460 4.1243 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.6490 1.9017 -1.7101 32 1 4.3959 3.5127 -1.5691 33 1 2.1905 2.6876 -3.5134 34 1 3.8771 3.0831 -3.9247 35 1 3.0156 4.9280 -5.3325 36 1 2.6999 5.4572 -0.6555 37 1 1.0490 4.8854 -0.3088 38 1 4.5449 1.2675 0.0109 39 1 0.8939 -2.5461 -0.5272 40 1 2.5872 -3.0949 -0.5198 41 1 0.7168 -5.9656 0.8294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898669446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:43 Heat of formation + Delta-G solvation = -108.634552 kcal Electronic energy + Delta-G solvation = -29045.117777 eV Core-core repulsion = 24597.491296 eV Total energy + Delta-G solvation = -4447.626481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.12524 -47.14557 -41.02546 -39.56050 -37.99153 -36.02791 -33.95924 -32.23045 -31.71377 -31.58408 -30.54452 -27.50616 -26.79310 -25.42141 -23.89109 -23.37876 -22.18279 -20.87246 -19.89681 -18.69192 -18.11472 -17.66403 -17.15463 -16.87925 -16.78698 -16.66362 -15.68808 -15.56737 -14.82150 -14.60505 -14.51162 -14.29125 -14.12172 -13.89134 -13.79222 -13.46878 -13.35908 -13.22252 -12.88577 -12.58306 -12.46991 -12.35189 -12.16719 -12.09553 -11.85943 -11.77146 -11.56147 -11.14601 -10.92113 -10.90048 -10.57460 -10.41202 -10.32679 -9.98111 -9.64202 -8.96949 -8.73204 -8.64577 -7.96987 -6.36172 -4.44424 2.17962 2.57232 2.67426 3.10208 3.19309 3.23207 3.24263 3.33045 3.41938 3.62621 3.71089 3.99272 4.22626 4.30480 4.49713 4.71350 4.75674 4.85862 4.98686 5.05412 5.11409 5.15465 5.23212 5.29220 5.44770 5.51694 5.63588 5.74676 5.86898 5.93836 6.18957 6.35590 6.47038 6.71213 6.84718 7.02782 7.07561 7.26055 7.52633 7.72646 7.74345 8.24436 8.32494 8.61361 9.23024 10.71836 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.025446 B = 0.002922 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.099487 B = 9581.685169 C = 9791.676239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.156 3.844 3 C -0.328 4.328 4 C 0.617 3.383 5 O -0.536 6.536 6 N -0.613 5.613 7 C 0.101 3.899 8 C -0.169 4.169 9 C 0.069 3.931 10 H 0.086 0.914 11 O -0.552 6.552 12 C 0.289 3.711 13 F -0.184 7.184 14 F -0.190 7.190 15 C 0.080 3.920 16 C 0.053 3.947 17 N -0.291 5.291 18 N -0.311 5.311 19 C 0.252 3.748 20 C -0.543 4.543 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.890 5.890 24 Si 0.908 3.092 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.387 0.613 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.178 0.822 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 18.538 -9.333 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.020 3.980 3 C -0.344 4.344 4 C 0.407 3.593 5 O -0.412 6.412 6 N -0.348 5.348 7 C -0.022 4.022 8 C -0.207 4.207 9 C 0.009 3.991 10 H 0.104 0.896 11 O -0.358 6.358 12 C 0.251 3.749 13 F -0.165 7.165 14 F -0.171 7.171 15 C -0.045 4.045 16 C -0.133 4.133 17 N -0.112 5.112 18 N -0.088 5.088 19 C 0.135 3.865 20 C -0.581 4.581 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.199 1.199 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.235 0.765 36 H 0.117 0.883 37 H 0.140 0.860 38 H 0.194 0.806 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.128 17.422 -8.655 20.118 hybrid contribution -0.036 0.243 0.477 0.536 sum 5.092 17.665 -8.179 20.121 Atomic orbital electron populations 1.20590 0.87157 1.05187 1.03093 1.21297 0.94704 0.86402 0.95613 1.19458 0.93672 0.91797 1.29459 1.17483 0.79145 0.84037 0.78614 1.90740 1.33638 1.78592 1.38242 1.47899 1.39054 1.10051 1.37812 1.22032 0.89287 1.03880 0.86977 1.22703 1.04154 0.95420 0.98469 1.22768 0.95450 0.96967 0.83934 0.89574 1.86589 1.44261 1.89232 1.15764 1.21466 0.83905 0.73341 0.96175 1.93049 1.57130 1.73074 1.93277 1.93028 1.93022 1.34036 1.97033 1.22359 1.03729 0.85341 0.93047 1.23684 0.95906 0.92480 1.01217 1.77146 0.98668 1.12015 1.23348 1.49345 1.02332 1.08233 1.48881 1.19856 0.96399 0.70812 0.99448 1.21228 1.47660 0.98173 0.91043 0.91630 1.24917 0.94377 0.95974 0.98310 1.69901 1.44405 1.07271 1.31120 0.86377 0.78949 0.77747 0.83455 1.19787 1.20872 1.19878 0.90575 0.89200 0.89306 0.86911 0.90586 0.89249 0.88772 0.76463 0.88268 0.86003 0.80554 0.92582 0.92456 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.70 36.00 0.35 -1.42 16 2 C 0.16 3.04 7.01 -81.60 -0.57 2.47 16 3 C -0.33 -5.69 5.13 -105.07 -0.54 -6.23 16 4 C 0.62 9.88 7.33 -12.52 -0.09 9.79 16 5 O -0.54 -10.18 15.56 5.27 0.08 -10.10 16 6 N -0.61 -7.27 2.97 -173.81 -0.52 -7.78 16 7 C 0.10 0.87 5.92 -3.55 -0.02 0.84 16 8 C -0.17 -1.28 5.59 -26.61 -0.15 -1.43 16 9 C 0.07 0.56 3.00 -26.68 -0.08 0.48 16 10 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 11 O -0.55 -4.83 13.21 -35.23 -0.47 -5.30 16 12 C 0.29 3.23 1.84 -26.61 -0.05 3.18 16 13 F -0.18 -2.66 16.42 2.25 0.04 -2.62 16 14 F -0.19 -2.30 16.99 2.25 0.04 -2.26 16 15 C 0.08 0.84 5.89 -3.71 -0.02 0.82 16 16 C 0.05 0.87 9.66 -16.98 -0.16 0.70 16 17 N -0.29 -5.93 12.50 30.86 0.39 -5.55 16 18 N -0.31 -6.73 3.56 -57.77 -0.21 -6.93 16 19 C 0.25 6.08 5.78 -5.19 -0.03 6.05 16 20 C -0.54 -14.40 9.39 -34.44 -0.32 -14.73 16 21 H 0.07 1.80 7.81 -52.48 -0.41 1.39 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.25 13.29 55.43 0.74 -23.51 16 24 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 29 H 0.09 1.65 7.71 -51.93 -0.40 1.24 16 30 H 0.09 1.52 7.10 -51.93 -0.37 1.15 16 31 H 0.11 1.12 4.59 -51.93 -0.24 0.88 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.91 7.73 -51.93 -0.40 0.51 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.39 1.40 9.08 45.56 0.41 1.81 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.12 1.48 7.03 -51.93 -0.36 1.11 16 38 H 0.18 2.09 7.64 -52.49 -0.40 1.69 16 39 H 0.06 1.34 7.64 -51.93 -0.40 0.95 16 40 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -33.16 350.53 -5.67 -38.83 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.24 Total: 2.06 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.79 Total: 2.24 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.40 Total: -43.78 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.38 Total: -15.40 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.08 Total: -4.89 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.16 -5.67 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898669446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.805 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds