Wall clock time and date at job start Tue Mar 31 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38049 * 126.29171 * 2 1 4 4 C 1.47424 * 126.41136 * 359.97350 * 3 2 1 5 5 O 1.21606 * 120.00533 * 40.47257 * 4 3 2 6 6 N 1.34778 * 119.99964 * 220.46125 * 4 3 2 7 7 C 1.46925 * 120.63209 * 185.51300 * 6 4 3 8 8 C 1.53196 * 108.77488 * 233.58836 * 7 6 4 9 9 C 1.53038 * 109.31281 * 305.36636 * 8 7 6 10 10 H 1.08995 * 109.46049 * 301.33834 * 9 8 7 11 11 O 1.42904 * 109.45729 * 181.37306 * 9 8 7 12 12 C 1.53042 * 109.53980 * 61.36532 * 9 8 7 13 13 F 1.39904 * 109.49614 * 58.58653 * 12 9 8 14 14 F 1.39901 * 109.49792 * 178.68196 * 12 9 8 15 15 C 1.46921 * 120.62853 * 5.23863 * 6 4 3 16 16 C 1.41286 * 107.16968 * 180.26305 * 3 2 1 17 17 N 1.30446 * 108.02254 * 359.74419 * 16 3 2 18 18 N 1.34262 * 126.29161 * 179.82536 * 2 1 3 19 19 C 1.46497 * 125.75399 * 359.97438 * 18 2 1 20 20 C 1.50706 * 109.47150 * 269.72361 * 19 18 2 21 21 H 1.07995 * 119.99918 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99874 * 179.72557 * 20 19 18 23 23 N 1.31517 * 120.00084 * 0.27586 * 22 20 19 24 24 Si 1.86797 * 119.99802 * 180.27071 * 22 20 19 25 25 H 1.48498 * 109.46985 * 90.00450 * 24 22 20 26 26 H 1.48501 * 109.46979 * 209.99759 * 24 22 20 27 27 H 1.48496 * 109.47481 * 330.00238 * 24 22 20 28 28 H 1.08993 * 109.47022 * 270.19895 * 1 2 3 29 29 H 1.08994 * 109.47170 * 30.20594 * 1 2 3 30 30 H 1.08997 * 109.46915 * 150.20246 * 1 2 3 31 31 H 1.08996 * 109.58622 * 353.37428 * 7 6 4 32 32 H 1.08992 * 109.58975 * 113.80681 * 7 6 4 33 33 H 1.09001 * 109.49932 * 65.31442 * 8 7 6 34 34 H 1.09002 * 109.49697 * 185.40828 * 8 7 6 35 35 H 0.96700 * 113.99872 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.58535 * 246.19576 * 15 6 4 37 37 H 1.09003 * 109.59343 * 6.62090 * 15 6 4 38 38 H 1.08002 * 125.98636 * 179.73125 * 16 3 2 39 39 H 1.08999 * 109.46998 * 149.72325 * 19 18 2 40 40 H 1.09001 * 109.47154 * 29.72086 * 19 18 2 41 41 H 0.97000 * 119.99976 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.9399 2.8629 0.6825 6 7 2.5336 3.4275 -0.7580 7 6 2.1875 4.8532 -0.6785 8 6 1.8832 5.3661 -2.0896 9 6 3.0686 5.0573 -3.0070 10 1 3.9670 5.5309 -2.6113 11 8 2.8014 5.5629 -4.3166 12 6 3.2797 3.5432 -3.0785 13 9 2.1157 2.9315 -3.5565 14 9 4.3444 3.2603 -3.9408 15 6 3.6035 3.0104 -1.6745 16 6 3.6590 0.6499 -0.0062 17 7 3.6340 -0.6543 -0.0041 18 7 2.3017 -1.0822 0.0033 19 6 1.8501 -2.4758 0.0081 20 6 1.7023 -2.9511 1.4306 21 1 1.9231 -2.2821 2.2491 22 6 1.2803 -4.2384 1.6869 23 7 1.0119 -5.0532 0.6901 24 14 1.0898 -4.8251 3.4501 25 1 -0.2910 -4.5442 3.9188 26 1 1.3472 -6.2861 3.5161 27 1 2.0615 -4.1115 4.3170 28 1 -0.3633 0.0036 1.0276 29 1 -0.3633 0.8881 -0.5170 30 1 -0.3633 -0.8918 -0.5107 31 1 1.3091 4.9812 -0.0459 32 1 3.0259 5.4101 -0.2604 33 1 0.9895 4.8723 -2.4714 34 1 1.7187 6.4431 -2.0576 35 1 3.5121 5.4029 -4.9525 36 1 4.5552 3.4200 -1.3357 37 1 3.6600 1.9221 -1.6992 38 1 4.5449 1.2677 -0.0119 39 1 2.5822 -3.0967 -0.5083 40 1 0.8889 -2.5480 -0.5008 41 1 0.7146 -5.9588 0.8704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898669447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:47 Heat of formation + Delta-G solvation = -109.064122 kcal Electronic energy + Delta-G solvation = -29199.720936 eV Core-core repulsion = 24752.075827 eV Total energy + Delta-G solvation = -4447.645109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.23795 -47.23381 -41.02140 -39.57183 -37.86986 -36.05483 -33.97761 -32.49183 -32.03041 -31.05682 -30.46401 -27.58388 -26.79125 -25.38442 -24.01332 -23.26087 -22.14822 -20.85141 -19.87940 -18.78582 -18.34658 -17.63468 -17.14308 -16.83034 -16.78554 -16.72502 -15.79444 -15.36178 -15.02607 -14.64452 -14.59272 -14.21406 -14.10985 -13.84018 -13.60045 -13.52454 -13.38799 -13.07922 -12.94333 -12.52891 -12.51736 -12.45511 -12.19188 -12.14512 -11.87033 -11.71520 -11.55300 -11.30257 -11.10118 -10.91910 -10.47620 -10.36832 -10.34047 -9.95441 -9.58591 -8.94671 -8.72571 -8.64790 -7.97694 -6.35248 -4.43194 2.13626 2.62875 2.67748 3.17538 3.19786 3.24221 3.27371 3.33549 3.36832 3.61376 3.67140 3.94328 4.17915 4.23290 4.51372 4.69104 4.77901 4.97556 5.00315 5.05806 5.07654 5.14840 5.23972 5.29339 5.39570 5.57891 5.64047 5.75885 5.83423 6.00252 6.23498 6.32895 6.42866 6.72807 6.86777 7.00117 7.07259 7.25339 7.53359 7.72991 7.75239 8.25984 8.33782 8.62364 9.23968 10.72944 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.003095 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.735626 B = 9045.256982 C = 9477.612040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.160 3.840 3 C -0.334 4.334 4 C 0.615 3.385 5 O -0.535 6.535 6 N -0.615 5.615 7 C 0.112 3.888 8 C -0.130 4.130 9 C 0.075 3.925 10 H 0.088 0.912 11 O -0.549 6.549 12 C 0.242 3.758 13 F -0.182 7.182 14 F -0.196 7.196 15 C 0.070 3.930 16 C 0.051 3.949 17 N -0.290 5.290 18 N -0.310 5.310 19 C 0.251 3.749 20 C -0.541 4.541 21 H 0.066 0.934 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.385 0.615 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.177 0.823 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 20.423 -7.555 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.023 3.977 3 C -0.349 4.349 4 C 0.407 3.593 5 O -0.412 6.412 6 N -0.350 5.350 7 C -0.010 4.010 8 C -0.168 4.168 9 C 0.015 3.985 10 H 0.106 0.894 11 O -0.355 6.355 12 C 0.204 3.796 13 F -0.163 7.163 14 F -0.177 7.177 15 C -0.055 4.055 16 C -0.135 4.135 17 N -0.110 5.110 18 N -0.087 5.087 19 C 0.134 3.866 20 C -0.579 4.579 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.234 0.766 36 H 0.118 0.882 37 H 0.144 0.856 38 H 0.194 0.806 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.401 19.293 -6.963 20.977 hybrid contribution 0.224 -0.061 0.348 0.419 sum 4.626 19.232 -6.614 20.857 Atomic orbital electron populations 1.20452 0.86926 1.03118 1.04147 1.21365 0.94807 0.86476 0.95021 1.19565 0.93520 0.92159 1.29705 1.17418 0.80536 0.83917 0.77455 1.90737 1.27770 1.80428 1.42238 1.47774 1.37749 1.07402 1.42053 1.21643 1.03117 0.80141 0.96126 1.21961 0.97640 1.03568 0.93621 1.22826 1.00960 0.88714 0.86011 0.89426 1.86573 1.48086 1.80888 1.19973 1.22469 0.73581 0.95010 0.88502 1.93060 1.48872 1.84764 1.89580 1.93010 1.57044 1.94995 1.72609 1.22874 0.92125 1.04851 0.85694 1.23733 0.96044 0.92595 1.01164 1.77152 0.98654 1.12016 1.23182 1.49353 1.02350 1.08303 1.48720 1.19880 0.96436 0.70775 0.99521 1.21247 1.47411 0.98288 0.90954 0.91596 1.24921 0.94406 0.95954 0.98352 1.69913 1.44305 1.07246 1.31226 0.86313 0.78791 0.77938 0.83448 1.20184 1.20791 1.19602 0.89301 0.90414 0.90462 0.87227 0.90764 0.89459 0.88427 0.76636 0.88198 0.85631 0.80613 0.92434 0.92527 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.58 36.01 0.35 -1.20 16 2 C 0.16 3.19 7.00 -81.60 -0.57 2.62 16 3 C -0.33 -5.95 5.21 -105.07 -0.55 -6.50 16 4 C 0.62 9.89 7.30 -12.52 -0.09 9.79 16 5 O -0.54 -9.92 15.87 5.27 0.08 -9.84 16 6 N -0.61 -7.29 2.95 -173.77 -0.51 -7.81 16 7 C 0.11 1.00 6.44 -3.71 -0.02 0.98 16 8 C -0.13 -1.08 5.61 -26.61 -0.15 -1.23 16 9 C 0.08 0.61 3.03 -26.69 -0.08 0.53 16 10 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 11 O -0.55 -4.83 13.28 -35.23 -0.47 -5.30 16 12 C 0.24 2.52 1.84 -26.39 -0.05 2.47 16 13 F -0.18 -2.54 16.42 2.25 0.04 -2.50 16 14 F -0.20 -2.02 16.65 2.25 0.04 -1.98 16 15 C 0.07 0.71 5.00 -3.49 -0.02 0.69 16 16 C 0.05 0.87 9.62 -16.98 -0.16 0.70 16 17 N -0.29 -6.09 12.50 30.86 0.39 -5.71 16 18 N -0.31 -6.89 3.56 -57.77 -0.21 -7.09 16 19 C 0.25 6.17 5.97 -5.19 -0.03 6.14 16 20 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 21 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.45 13.29 55.43 0.74 -23.72 16 24 Si 0.91 20.78 29.54 -169.99 -5.02 15.75 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 30 H 0.08 1.32 7.05 -51.93 -0.37 0.95 16 31 H 0.11 1.12 6.99 -51.93 -0.36 0.75 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.93 7.73 -51.93 -0.40 0.52 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.39 2.11 8.69 45.56 0.40 2.51 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.13 1.51 4.75 -51.93 -0.25 1.26 16 38 H 0.18 2.19 7.33 -52.49 -0.38 1.81 16 39 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.06 1.38 7.01 -51.93 -0.36 1.01 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -32.45 349.10 -5.68 -38.13 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.21 Total: 2.92 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.80 Total: 1.88 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.40 Total: -44.32 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.38 Total: -15.14 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.07 Total: -4.48 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.45 -5.68 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898669447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.936 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds