Wall clock time and date at job start Tue Mar 31 2020 04:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40087 * 126.03477 * 2 1 4 4 C 1.30839 * 108.20037 * 179.97438 * 3 2 1 5 5 C 1.39870 * 108.20307 * 0.02562 * 4 3 2 6 6 C 1.34939 * 126.03518 * 179.97438 * 2 1 3 7 7 C 1.50695 * 126.13107 * 0.02562 * 6 2 1 8 8 H 1.09006 * 109.51536 * 145.10080 * 7 6 2 9 9 C 1.53292 * 109.51441 * 265.25417 * 7 6 2 10 10 N 1.47150 * 108.38737 * 172.22461 * 9 7 6 11 11 S 1.65602 * 120.98251 * 129.44300 * 10 9 7 12 12 O 1.42099 * 104.27837 * 26.09278 * 11 10 9 13 13 O 1.42100 * 104.27637 * 153.95447 * 11 10 9 14 14 C 1.81405 * 104.44983 * 270.02030 * 11 10 9 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 11 10 16 16 C 1.50699 * 109.46852 * 179.97438 * 15 14 11 17 17 H 1.08003 * 120.00411 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99836 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00208 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46923 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47472 * 119.99866 * 20 18 16 23 23 H 1.48498 * 109.47224 * 240.00057 * 20 18 16 24 24 C 1.47155 * 118.03530 * 309.46234 * 10 9 7 25 25 C 1.53294 * 108.38183 * 50.53827 * 24 10 9 26 26 O 1.42961 * 109.22077 * 307.69381 * 25 24 10 27 27 H 1.08992 * 109.47485 * 270.02783 * 1 2 3 28 28 H 1.09007 * 109.46799 * 30.02969 * 1 2 3 29 29 H 1.08995 * 109.47116 * 150.02436 * 1 2 3 30 30 H 1.08001 * 125.89447 * 179.97438 * 4 3 2 31 31 H 1.07999 * 126.03520 * 180.26693 * 5 4 3 32 32 H 1.09001 * 109.67858 * 291.94799 * 9 7 6 33 33 H 1.08996 * 109.68386 * 52.49884 * 9 7 6 34 34 H 1.09005 * 109.47192 * 300.00433 * 14 11 10 35 35 H 1.09009 * 109.46856 * 59.99828 * 14 11 10 36 36 H 1.08991 * 109.47493 * 300.00544 * 15 14 11 37 37 H 1.09002 * 109.46519 * 60.00507 * 15 14 11 38 38 H 0.97006 * 120.00165 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.68320 * 290.81328 * 24 10 9 40 40 H 1.09004 * 109.71059 * 170.27247 * 24 10 9 41 41 H 1.09005 * 109.51112 * 187.77598 * 25 24 10 42 42 H 1.08996 * 109.55711 * 67.64339 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5436 -0.6666 0.0003 6 6 2.2589 -1.0912 0.0005 7 6 1.7973 -2.5257 0.0006 8 1 2.4882 -3.1306 -0.5869 9 6 1.7538 -3.0495 1.4406 10 7 1.1258 -4.3803 1.4317 11 16 1.8468 -5.6683 2.1824 12 8 2.6455 -5.0790 3.1993 13 8 0.7675 -6.5335 2.5075 14 6 2.8941 -6.4110 0.9008 15 6 3.6230 -7.6258 1.4785 16 6 4.4924 -8.2431 0.4136 17 1 4.5225 -7.8118 -0.5761 18 6 5.2496 -9.3585 0.7028 19 7 5.2127 -9.8839 1.9079 20 14 6.3279 -10.1233 -0.6168 21 1 6.1929 -9.3487 -1.8766 22 1 7.7448 -10.1016 -0.1725 23 1 5.9038 -11.5271 -0.8505 24 6 -0.1617 -4.5328 0.7356 25 6 -0.0248 -3.9368 -0.6701 26 8 0.4887 -2.6064 -0.5693 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 4.4054 1.3711 0.0003 31 1 4.4210 -1.2963 0.0047 32 1 2.7673 -3.1245 1.8347 33 1 1.1677 -2.3711 2.0604 34 1 2.2736 -6.7244 0.0611 35 1 3.6248 -5.6779 0.5588 36 1 4.2434 -7.3120 2.3179 37 1 2.8925 -8.3589 1.8207 38 1 5.7457 -10.6684 2.1115 39 1 -0.9407 -4.0037 1.2844 40 1 -0.4173 -5.5900 0.6627 41 1 -1.0020 -3.9143 -1.1527 42 1 0.6587 -4.5471 -1.2602 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907486800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:56 Heat of formation + Delta-G solvation = -29.854821 kcal Electronic energy + Delta-G solvation = -26858.815146 eV Core-core repulsion = 22968.445197 eV Total energy + Delta-G solvation = -3890.369949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52159 -39.46183 -36.81221 -35.63026 -35.05546 -33.96617 -33.40663 -32.71022 -31.23970 -29.68803 -27.11136 -26.74970 -25.67712 -24.64608 -22.29823 -21.39447 -21.17625 -20.21446 -18.78098 -17.85522 -17.15618 -16.69455 -16.53578 -16.10536 -15.75578 -15.57589 -15.22332 -15.01841 -14.72506 -14.61265 -14.35594 -14.03928 -13.71301 -13.50197 -12.91465 -12.71426 -12.60747 -12.51842 -12.25895 -11.96017 -11.90143 -11.84754 -11.72725 -11.50421 -11.14664 -11.08538 -11.02963 -10.76206 -10.56970 -10.47326 -10.39813 -9.83506 -9.55764 -9.28631 -8.92733 -8.65111 -8.56251 -6.18070 -4.24083 0.56456 1.61409 2.37882 2.62934 2.80450 3.14434 3.21650 3.29304 3.32164 4.15593 4.20698 4.31950 4.37100 4.45980 4.48949 4.58308 4.78837 4.90985 5.01054 5.04953 5.06822 5.12010 5.17307 5.25651 5.40809 5.46587 5.50160 5.53197 5.57176 5.62194 5.68944 5.82352 5.94481 6.33974 6.37614 6.49318 6.65096 6.80409 7.22160 7.27622 7.54891 7.74674 8.10466 8.79476 9.41235 10.92898 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.003405 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.986917 B = 8220.423830 C = 9032.371153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.355 5.355 3 N -0.299 5.299 4 C 0.046 3.954 5 C -0.262 4.262 6 C 0.092 3.908 7 C 0.142 3.858 8 H 0.096 0.904 9 C 0.104 3.896 10 N -1.009 6.009 11 S 2.587 3.413 12 O -0.959 6.959 13 O -0.960 6.960 14 C -0.588 4.588 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.087 3.913 25 C 0.046 3.954 26 O -0.377 6.377 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.185 0.815 31 H 0.153 0.847 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 17.308 -6.103 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.138 5.138 3 N -0.121 5.121 4 C -0.139 4.139 5 C -0.292 4.292 6 C -0.038 4.038 7 C 0.081 3.919 8 H 0.114 0.886 9 C -0.023 4.023 10 N -0.845 5.845 11 S 2.686 3.314 12 O -0.949 6.949 13 O -0.950 6.950 14 C -0.721 4.721 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.039 4.039 25 C -0.032 4.032 26 O -0.296 6.296 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.202 0.798 31 H 0.170 0.830 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.320 18.120 -5.106 21.967 hybrid contribution 1.495 -1.359 -1.175 2.337 sum -9.824 16.761 -6.282 20.419 Atomic orbital electron populations 1.22188 0.73820 1.05329 1.03383 1.48467 1.06825 1.02805 1.55656 1.77364 1.01975 1.08100 1.24644 1.23809 0.95257 0.94793 1.00000 1.21247 0.95911 0.95369 1.16681 1.20580 0.91465 0.88655 1.03061 1.20948 0.85892 0.90033 0.95050 0.88644 1.21922 1.00492 0.84229 0.95617 1.58223 1.31444 1.22362 1.72503 1.05937 0.75281 0.73202 0.76945 1.93550 1.71241 1.75806 1.54318 1.93544 1.52902 1.65799 1.82754 1.30505 1.13528 1.11901 1.16188 1.18977 0.95689 0.88959 0.97494 1.21016 1.25748 1.12186 0.97062 0.91967 1.25072 0.96868 0.96794 0.95734 1.69962 1.40580 1.22510 1.19689 0.86413 0.80198 0.79141 0.81532 1.19626 1.20742 1.20778 1.22069 0.85492 1.03348 0.93004 1.23102 1.00511 0.83370 0.96174 1.87817 1.31265 1.27866 1.82641 0.91265 0.90008 0.86857 0.79810 0.82953 0.87432 0.90494 0.86229 0.86191 0.94785 0.94839 0.92519 0.90388 0.87802 0.87188 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.09 59.85 0.66 1.45 16 2 N -0.36 -4.08 4.01 -63.89 -0.26 -4.34 16 3 N -0.30 -3.75 12.58 30.63 0.39 -3.36 16 4 C 0.05 0.49 12.03 -17.36 -0.21 0.28 16 5 C -0.26 -2.81 10.72 -40.01 -0.43 -3.23 16 6 C 0.09 1.02 6.05 -82.27 -0.50 0.52 16 7 C 0.14 1.43 3.20 -27.73 -0.09 1.34 16 8 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 9 C 0.10 1.18 5.77 -3.54 -0.02 1.16 16 10 N -1.01 -12.53 3.27 -113.06 -0.37 -12.90 16 11 S 2.59 43.86 5.42 -107.50 -0.58 43.28 16 12 O -0.96 -19.02 16.81 -57.54 -0.97 -19.99 16 13 O -0.96 -18.75 16.81 -57.54 -0.97 -19.72 16 14 C -0.59 -10.45 6.12 37.16 0.23 -10.22 16 15 C 0.03 0.68 4.98 -27.88 -0.14 0.55 16 16 C -0.52 -13.90 9.11 -34.44 -0.31 -14.21 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 20 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.09 0.84 6.50 -3.53 -0.02 0.82 16 25 C 0.05 0.35 6.98 37.31 0.26 0.62 16 26 O -0.38 -3.46 7.14 -35.23 -0.25 -3.71 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.11 0.89 5.21 -51.93 -0.27 0.62 16 30 H 0.18 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.11 1.25 7.23 -51.93 -0.38 0.88 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.12 1.86 8.14 -51.92 -0.42 1.44 16 35 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.00 7.23 -51.93 -0.38 0.62 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -35.84 359.59 -8.60 -44.44 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.06 Total: -0.20 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.67 Total: -19.42 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.50 Total: -45.75 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -2.19 Total: -43.42 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 43.86 SS G_CDS: -0.58 Total: 43.28 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.84 -8.60 -44.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907486800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.588 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds