Wall clock time and date at job start Tue Mar 31 2020 04:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40085 * 126.03816 * 2 1 4 4 C 1.30841 * 108.20773 * 179.85105 * 3 2 1 5 5 C 1.39866 * 108.19911 * 0.40256 * 4 3 2 6 6 C 1.34944 * 126.03675 * 180.29997 * 2 1 3 7 7 C 1.50702 * 126.13068 * 0.02562 * 6 2 1 8 8 H 1.09001 * 109.50627 * 25.09742 * 7 6 2 9 9 C 1.53294 * 109.51111 * 265.00129 * 7 6 2 10 10 N 1.47153 * 108.38166 * 187.77158 * 9 7 6 11 11 S 1.65600 * 120.98341 * 230.55428 * 10 9 7 12 12 O 1.42100 * 104.27947 * 206.07082 * 11 10 9 13 13 O 1.42103 * 104.27546 * 333.92971 * 11 10 9 14 14 C 1.81400 * 104.45076 * 89.99741 * 11 10 9 15 15 C 1.52997 * 109.47178 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47050 * 180.02562 * 15 14 11 17 17 H 1.07993 * 119.99675 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99883 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00315 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00161 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47115 * 59.99679 * 20 18 16 22 22 H 1.48498 * 109.47440 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46994 * 300.00253 * 20 18 16 24 24 C 1.47160 * 118.03809 * 50.53115 * 10 9 7 25 25 C 1.53293 * 108.38152 * 309.46460 * 24 10 9 26 26 O 1.42958 * 109.51423 * 145.24935 * 7 6 2 27 27 H 1.09002 * 109.47391 * 269.69466 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.69523 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.69650 * 1 2 3 30 30 H 1.08002 * 125.90099 * 180.14088 * 4 3 2 31 31 H 1.07998 * 126.04130 * 179.74193 * 5 4 3 32 32 H 1.09002 * 109.67808 * 307.48759 * 9 7 6 33 33 H 1.08995 * 109.68335 * 68.04670 * 9 7 6 34 34 H 1.08994 * 109.47088 * 300.00547 * 14 11 10 35 35 H 1.09004 * 109.46912 * 60.00232 * 14 11 10 36 36 H 1.09001 * 109.47049 * 300.00371 * 15 14 11 37 37 H 1.08996 * 109.46977 * 60.00316 * 15 14 11 38 38 H 0.96992 * 120.00674 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.67700 * 69.18740 * 24 10 9 40 40 H 1.08994 * 109.68364 * 189.70228 * 24 10 9 41 41 H 1.09004 * 109.50914 * 172.21996 * 25 24 10 42 42 H 1.08994 * 109.51467 * 292.32541 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 0.0032 5 6 3.5437 -0.6665 -0.0039 6 6 2.2589 -1.0912 -0.0057 7 6 1.7974 -2.5258 -0.0138 8 1 0.8003 -2.5849 -0.4503 9 6 1.7599 -3.0596 1.4227 10 7 1.4901 -4.5054 1.3736 11 16 0.2885 -5.1800 2.2919 12 8 0.7028 -6.5267 2.4767 13 8 0.1540 -4.2966 3.3968 14 6 -1.1842 -5.1064 1.2352 15 6 -2.3775 -5.7071 1.9809 16 6 -3.6008 -5.6465 1.1028 17 1 -3.5336 -5.2224 0.1119 18 6 -4.8053 -6.1334 1.5642 19 7 -4.8867 -6.6513 2.7704 20 14 -6.3215 -6.0590 0.4756 21 1 -6.0756 -6.8308 -0.7690 22 1 -7.4798 -6.6419 1.1994 23 1 -6.6146 -4.6445 0.1311 24 6 2.3193 -5.3340 0.4839 25 6 2.3294 -4.6892 -0.9068 26 8 2.7053 -3.3152 -0.7859 27 1 -0.3634 -0.0055 1.0276 28 1 -0.3633 -0.8873 -0.5186 29 1 -0.3633 0.8927 -0.5091 30 1 4.4055 1.3710 0.0062 31 1 4.4211 -1.2963 -0.0074 32 1 2.7208 -2.8818 1.9056 33 1 0.9696 -2.5574 1.9805 34 1 -1.3990 -4.0680 0.9832 35 1 -1.0042 -5.6724 0.3212 36 1 -2.1629 -6.7455 2.2333 37 1 -2.5573 -5.1408 2.8947 38 1 -5.7342 -6.9935 3.0951 39 1 3.3365 -5.3850 0.8724 40 1 1.8998 -6.3380 0.4207 41 1 3.0461 -5.2081 -1.5434 42 1 1.3347 -4.7579 -1.3472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907486803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:00 Heat of formation + Delta-G solvation = -29.951973 kcal Electronic energy + Delta-G solvation = -26877.056820 eV Core-core repulsion = 22986.682658 eV Total energy + Delta-G solvation = -3890.374162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51798 -39.41677 -36.82625 -35.63537 -34.96614 -33.99658 -33.65831 -32.57964 -31.27112 -29.56509 -27.11659 -26.85688 -25.70821 -24.60701 -22.38636 -21.50167 -21.07893 -19.96594 -18.82508 -17.86609 -17.10134 -16.76903 -16.67003 -16.12217 -15.77949 -15.54495 -15.18714 -15.00603 -14.76124 -14.64082 -14.16602 -13.95376 -13.79964 -13.52930 -12.98284 -12.78615 -12.61743 -12.57280 -12.29168 -12.03525 -11.87850 -11.76086 -11.74264 -11.50877 -11.15044 -11.07548 -10.90355 -10.78531 -10.71463 -10.48964 -10.42734 -9.85029 -9.59894 -9.32752 -8.91095 -8.66011 -8.58386 -6.20447 -4.27029 0.54888 1.58787 2.20420 2.64453 2.80068 3.20688 3.26376 3.27518 3.39347 4.14280 4.21132 4.29251 4.32623 4.43456 4.48446 4.58147 4.64660 4.92489 4.97533 5.00094 5.04401 5.08018 5.14577 5.27212 5.29668 5.43381 5.46414 5.52119 5.57173 5.59669 5.70993 5.84977 5.98282 6.33622 6.34268 6.48166 6.67889 6.83362 7.18971 7.24720 7.51032 7.71336 8.07494 8.75982 9.38291 10.90442 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.003681 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.717216 B = 7604.932591 C = 8682.800975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.365 5.365 3 N -0.290 5.290 4 C 0.041 3.959 5 C -0.241 4.241 6 C 0.083 3.917 7 C 0.144 3.856 8 H 0.077 0.923 9 C 0.104 3.896 10 N -1.010 6.010 11 S 2.587 3.413 12 O -0.958 6.958 13 O -0.960 6.960 14 C -0.589 4.589 15 C 0.029 3.971 16 C -0.523 4.523 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.086 3.914 25 C 0.048 3.952 26 O -0.362 6.362 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.185 0.815 31 H 0.151 0.849 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.267 0.733 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.798 9.232 -8.201 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.149 5.149 3 N -0.112 5.112 4 C -0.144 4.144 5 C -0.270 4.270 6 C -0.045 4.045 7 C 0.083 3.917 8 H 0.094 0.906 9 C -0.023 4.023 10 N -0.846 5.846 11 S 2.686 3.314 12 O -0.949 6.949 13 O -0.950 6.950 14 C -0.722 4.722 15 C -0.010 4.010 16 C -0.562 4.562 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.201 1.201 24 C -0.040 4.040 25 C -0.031 4.031 26 O -0.280 6.280 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.201 0.799 31 H 0.169 0.831 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.057 9.881 -7.240 19.410 hybrid contribution -0.863 -0.629 -1.061 1.505 sum 14.194 9.252 -8.301 18.868 Atomic orbital electron populations 1.22015 0.73991 1.04861 1.04209 1.48469 1.06656 1.02898 1.56848 1.77401 1.01954 1.07399 1.24442 1.23877 0.95223 0.95111 1.00202 1.21247 0.96375 0.94654 1.14724 1.20346 0.91814 0.88817 1.03537 1.20577 0.93292 0.85207 0.92624 0.90562 1.21924 1.04417 0.80310 0.95613 1.58212 1.50379 1.14761 1.61219 1.05934 0.75769 0.73905 0.75795 1.93547 1.80626 1.35741 1.84938 1.93548 1.86385 1.66170 1.48887 1.30514 1.17069 1.10018 1.14610 1.18966 0.89855 0.96505 0.95701 1.20929 0.92885 1.41490 1.00939 0.92114 1.25064 0.99216 0.94859 0.95238 1.69933 1.26493 1.39509 1.16760 0.86529 0.81892 0.78466 0.80384 1.20045 1.21001 1.20070 1.22093 0.97044 0.94871 0.89942 1.23098 1.01917 0.81644 0.96396 1.87959 1.48465 1.20021 1.71563 0.89907 0.89307 0.88830 0.79854 0.83142 0.89634 0.88164 0.86451 0.86185 0.94790 0.94824 0.92363 0.90139 0.87847 0.87032 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.27 59.85 0.67 1.44 16 2 N -0.36 -4.20 4.01 -63.88 -0.26 -4.45 16 3 N -0.29 -3.62 12.58 30.62 0.39 -3.23 16 4 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 5 C -0.24 -2.60 10.36 -40.01 -0.41 -3.02 16 6 C 0.08 0.94 6.00 -82.26 -0.49 0.45 16 7 C 0.14 1.53 3.03 -27.73 -0.08 1.45 16 8 H 0.08 0.73 6.95 -51.93 -0.36 0.37 16 9 C 0.10 1.21 5.77 -3.53 -0.02 1.19 16 10 N -1.01 -12.89 3.27 -113.06 -0.37 -13.26 16 11 S 2.59 44.13 5.42 -107.50 -0.58 43.54 16 12 O -0.96 -18.84 16.81 -57.54 -0.97 -19.81 16 13 O -0.96 -19.04 16.81 -57.54 -0.97 -20.01 16 14 C -0.59 -10.41 6.12 37.16 0.23 -10.18 16 15 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 16 C -0.52 -13.84 9.11 -34.44 -0.31 -14.16 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 20 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.09 0.88 6.50 -3.53 -0.02 0.86 16 25 C 0.05 0.41 6.98 37.31 0.26 0.67 16 26 O -0.36 -3.82 10.07 -35.23 -0.35 -4.18 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.62 6.98 -51.93 -0.36 0.26 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.18 7.23 -51.93 -0.38 0.81 16 34 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.12 1.86 8.14 -51.92 -0.42 1.44 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.03 7.22 -51.93 -0.38 0.66 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -35.84 362.70 -8.65 -44.50 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.09 Total: -0.06 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -0.63 Total: -18.98 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.50 Total: -45.96 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -2.29 Total: -44.00 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 44.13 SS G_CDS: -0.58 Total: 43.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.84 -8.65 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907486803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.543 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds