Wall clock time and date at job start Tue Mar 31 2020 06:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48499 * 109.47266 * 270.00092 * 3 2 1 5 5 H 1.48503 * 109.47269 * 30.00025 * 3 2 1 6 6 H 1.48502 * 109.47149 * 149.99778 * 3 2 1 7 7 C 1.38795 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99734 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00442 * 180.02562 * 7 2 1 10 10 C 1.80999 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47102 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99645 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00221 * 180.27262 * 11 10 9 14 14 C 1.46495 * 120.00163 * 179.72275 * 13 11 10 15 15 H 1.09001 * 109.47792 * 325.00552 * 14 13 11 16 16 C 1.53004 * 109.46936 * 85.00732 * 14 13 11 17 17 C 1.53000 * 117.49833 * 8.74245 * 16 14 13 18 18 C 1.53007 * 117.49464 * 300.08365 * 16 14 13 19 19 C 1.53001 * 109.47485 * 205.00053 * 14 13 11 20 20 C 1.53003 * 109.54380 * 300.00759 * 19 14 13 21 21 O 1.42902 * 109.46578 * 294.22490 * 20 19 14 22 22 C 1.53172 * 109.54630 * 179.82215 * 19 14 13 23 23 C 1.53105 * 109.15559 * 183.24146 * 22 19 14 24 24 O 1.42896 * 109.48645 * 57.48302 * 23 22 19 25 25 C 1.42911 * 114.09418 * 298.88280 * 24 23 22 26 26 C 1.53092 * 109.41427 * 61.16334 * 25 24 23 27 27 H 0.96992 * 119.99953 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47255 * 60.00224 * 10 9 7 29 29 H 1.08994 * 109.47291 * 300.00035 * 10 9 7 30 30 H 0.97002 * 119.99880 * 359.73041 * 13 11 10 31 31 H 1.09000 * 115.54951 * 154.41783 * 16 14 13 32 32 H 1.08997 * 117.49909 * 0.02562 * 17 16 14 33 33 H 1.09003 * 117.49721 * 145.02733 * 17 16 14 34 34 H 1.09003 * 117.49586 * 214.97759 * 18 16 14 35 35 H 1.08997 * 117.49855 * 359.97438 * 18 16 14 36 36 H 1.09000 * 109.47320 * 54.22551 * 20 19 14 37 37 H 1.08999 * 109.46828 * 174.23167 * 20 19 14 38 38 H 0.96705 * 113.99166 * 179.97438 * 21 20 19 39 39 H 1.08995 * 109.52383 * 303.06194 * 22 19 14 40 40 H 1.09000 * 109.52089 * 63.25213 * 22 19 14 41 41 H 1.08996 * 109.41009 * 297.49308 * 23 22 19 42 42 H 1.09005 * 109.48864 * 177.50788 * 23 22 19 43 43 H 1.08990 * 109.47876 * 301.17365 * 25 24 23 44 44 H 1.09005 * 109.48560 * 181.14676 * 25 24 23 45 45 H 1.08990 * 109.52199 * 182.48578 * 26 25 24 46 46 H 1.09000 * 109.57434 * 62.32373 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5732 -3.2324 0.0008 12 8 6.3441 -2.2961 0.0014 13 7 6.0459 -4.4945 -0.0049 14 6 7.4908 -4.7356 -0.0112 15 1 7.9856 -3.9631 -0.6000 16 6 8.0200 -4.7001 1.4240 17 6 6.9912 -4.6415 2.5550 18 6 7.8278 -3.4052 2.2160 19 6 7.7766 -6.1071 -0.6262 20 6 7.0828 -7.1927 0.1991 21 8 7.6706 -7.2503 1.5003 22 6 9.2874 -6.3589 -0.6376 23 6 9.5686 -7.6964 -1.3275 24 8 9.0275 -7.6737 -2.6499 25 6 7.6111 -7.4897 -2.6976 26 6 7.2513 -6.1429 -2.0648 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8893 29 1 3.6434 -3.4317 0.8906 30 1 5.4292 -5.2434 -0.0051 31 1 8.9326 -5.2687 1.6027 32 1 5.9374 -4.6286 2.2766 33 1 7.2272 -5.1711 3.4780 34 1 8.6138 -3.1221 2.9161 35 1 7.3248 -2.5784 1.7144 36 1 6.0222 -6.9582 0.2896 37 1 7.2010 -8.1566 -0.2959 38 1 7.2788 -7.9181 2.0796 39 1 9.7862 -5.5574 -1.1825 40 1 9.6591 -6.3906 0.3866 41 1 9.1046 -8.5021 -0.7586 42 1 10.6451 -7.8603 -1.3781 43 1 7.1215 -8.2926 -2.1467 44 1 7.2772 -7.5046 -3.7351 45 1 6.1683 -6.0203 -2.0603 46 1 7.7069 -5.3362 -2.6391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911986701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:56 Heat of formation + Delta-G solvation = -102.282645 kcal Electronic energy + Delta-G solvation = -27589.160750 eV Core-core repulsion = 23799.190438 eV Total energy + Delta-G solvation = -3789.970312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12996 -39.31039 -37.45026 -36.28970 -34.76502 -33.13432 -32.45208 -31.45264 -29.72190 -27.47782 -26.52881 -25.61555 -24.08436 -23.27199 -22.10660 -20.87192 -19.96739 -18.99615 -17.93373 -17.68089 -16.91797 -16.41990 -16.33488 -16.02885 -15.84669 -15.34860 -14.98986 -14.73416 -14.56816 -14.37183 -14.01568 -13.76937 -13.32383 -13.02598 -12.81419 -12.79975 -12.57267 -12.55018 -12.03525 -11.94602 -11.59774 -11.37148 -11.27934 -11.21999 -11.01948 -10.88793 -10.61148 -10.50456 -10.24174 -10.07569 -9.95939 -9.85802 -9.50053 -9.40617 -9.01912 -8.83760 -8.51504 -6.92840 -6.30467 -4.02066 2.74666 2.94374 3.28209 3.32799 3.49561 3.56832 3.62502 3.84459 4.01022 4.28182 4.31944 4.35721 4.53767 4.67263 4.71719 4.79168 4.83820 4.89372 5.07120 5.08747 5.09878 5.16558 5.21528 5.28701 5.29190 5.32817 5.42249 5.48880 5.59696 5.68910 5.73043 5.75261 5.81739 5.91148 5.95923 5.97536 6.00327 6.14462 6.34903 6.62005 6.63830 6.88214 7.33193 7.59806 7.92608 8.39754 8.49823 9.15852 10.78848 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.003120 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.059711 B = 8972.699705 C = 9485.906544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.087 0.913 9 S -0.138 6.138 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.512 6.512 13 N -0.729 5.729 14 C 0.191 3.809 15 H 0.090 0.910 16 C -0.142 4.142 17 C -0.160 4.160 18 C -0.198 4.198 19 C -0.059 4.059 20 C 0.084 3.916 21 O -0.552 6.552 22 C -0.139 4.139 23 C 0.062 3.938 24 O -0.383 6.383 25 C 0.059 3.941 26 C -0.147 4.147 27 H 0.271 0.729 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.395 0.605 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.373 0.627 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.258 -19.834 0.135 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.105 0.895 9 S 0.088 5.912 10 C -0.276 4.276 11 C 0.319 3.681 12 O -0.387 6.387 13 N -0.384 5.384 14 C 0.086 3.914 15 H 0.108 0.892 16 C -0.162 4.162 17 C -0.197 4.197 18 C -0.234 4.234 19 C -0.060 4.060 20 C 0.006 3.994 21 O -0.357 6.357 22 C -0.177 4.177 23 C -0.015 4.015 24 O -0.302 6.302 25 C -0.017 4.017 26 C -0.185 4.185 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.230 0.770 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.219 0.781 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.843 -17.693 -0.286 25.849 hybrid contribution -1.796 -1.121 0.525 2.181 sum 17.047 -18.814 0.239 25.390 Atomic orbital electron populations 1.69936 1.05934 1.27784 1.48088 1.24710 0.94442 0.98966 0.93161 0.86737 0.81910 0.83281 0.79937 1.19209 1.19943 1.15899 1.22318 0.88365 0.97491 1.58785 0.89470 1.84787 1.09155 0.99853 1.97402 1.23288 0.94194 1.04542 1.05572 1.20230 0.90442 0.82434 0.75043 1.90644 1.58519 1.42179 1.47356 1.46106 1.07233 1.07822 1.77190 1.20357 0.80906 0.95224 0.94890 0.89216 1.22518 1.01070 1.00935 0.91632 1.22690 0.96848 1.01563 0.98598 1.23445 1.03249 0.93312 1.03439 1.20829 0.96515 0.94479 0.94136 1.22199 0.95694 0.97303 0.84252 1.86616 1.63141 1.61697 1.24250 1.22186 0.94374 0.98567 1.02577 1.22596 0.99181 0.96284 0.83452 1.87948 1.21407 1.93450 1.27394 1.22634 0.81859 0.95523 1.01730 1.22241 1.02233 0.99316 0.94701 0.91932 0.88714 0.88697 0.77027 0.87112 0.89533 0.89922 0.90009 0.86440 0.93788 0.93595 0.78073 0.90841 0.89178 0.93135 0.88920 0.93171 0.88658 0.90302 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.74 27.74 -169.99 -4.72 17.03 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 10 C -0.13 -2.35 6.16 36.01 0.22 -2.13 16 11 C 0.53 8.94 6.69 -10.99 -0.07 8.87 16 12 O -0.51 -10.42 12.89 5.55 0.07 -10.34 16 13 N -0.73 -8.75 2.90 -53.80 -0.16 -8.91 16 14 C 0.19 2.14 1.71 -67.93 -0.12 2.02 16 15 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 16 C -0.14 -1.63 3.64 -90.61 -0.33 -1.96 16 17 C -0.16 -1.94 8.92 -26.69 -0.24 -2.18 16 18 C -0.20 -2.79 9.83 -26.69 -0.26 -3.05 16 19 C -0.06 -0.49 0.30 -154.32 -0.05 -0.53 16 20 C 0.08 0.56 5.22 37.16 0.19 0.75 16 21 O -0.55 -3.65 9.32 -35.23 -0.33 -3.97 16 22 C -0.14 -1.13 4.45 -26.59 -0.12 -1.25 16 23 C 0.06 0.47 6.57 37.21 0.24 0.71 16 24 O -0.38 -3.62 10.77 -35.23 -0.38 -4.00 16 25 C 0.06 0.45 6.57 37.21 0.24 0.69 16 26 C -0.15 -1.22 4.72 -26.59 -0.13 -1.34 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 30 H 0.39 3.82 6.61 -40.82 -0.27 3.55 16 31 H 0.11 1.20 5.61 -51.93 -0.29 0.91 16 32 H 0.09 1.13 6.67 -51.93 -0.35 0.79 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.12 2.07 5.01 -51.93 -0.26 1.81 16 36 H 0.04 0.28 6.34 -51.93 -0.33 -0.04 16 37 H 0.05 0.27 5.05 -51.93 -0.26 0.01 16 38 H 0.37 1.25 9.12 45.56 0.42 1.66 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.74 5.67 -51.93 -0.29 0.44 16 41 H 0.05 0.34 6.74 -51.93 -0.35 -0.01 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.32 6.48 -51.93 -0.34 -0.02 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.62 7.58 -51.93 -0.39 0.23 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -33.66 357.33 -7.60 -41.26 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.07 Total: 6.05 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.19 Total: -11.32 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.62 Total: -34.65 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.64 Total: -18.32 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.72 Total: 17.03 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.66 -7.60 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911986701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.019 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds