Wall clock time and date at job start Tue Mar 31 2020 05:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00650 * 2 1 3 5 5 H 1.08002 * 120.00516 * 119.99366 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99666 * 4 2 1 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 2 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 N 1.46506 * 109.46957 * 240.00311 * 2 1 3 13 13 C 1.46499 * 119.99954 * 300.00257 * 12 2 1 14 14 S 1.65597 * 119.99975 * 120.00074 * 12 2 1 15 15 O 1.42095 * 106.40187 * 203.54025 * 14 12 2 16 16 O 1.42103 * 106.40390 * 336.46185 * 14 12 2 17 17 N 1.65603 * 107.21797 * 90.00191 * 14 12 2 18 18 C 1.47019 * 125.65324 * 90.02204 * 17 14 12 19 19 C 1.54317 * 107.27527 * 181.02240 * 18 17 14 20 20 C 1.55156 * 102.94147 * 22.19686 * 19 18 17 21 21 H 1.09001 * 111.00707 * 82.61014 * 20 19 18 22 22 N 1.46504 * 111.00540 * 206.42157 * 20 19 18 23 23 C 1.35321 * 125.86495 * 33.26482 * 22 20 19 24 24 C 1.35353 * 106.17196 * 179.90494 * 23 22 20 25 25 N 1.33777 * 106.49504 * 0.34645 * 24 23 22 26 26 N 1.28625 * 108.88625 * 359.77843 * 25 24 23 27 27 C 1.47432 * 125.64675 * 269.71901 * 17 14 12 28 28 H 1.08994 * 109.46844 * 299.99958 * 1 2 3 29 29 H 1.08998 * 109.46846 * 59.99273 * 1 2 3 30 30 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 31 31 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47262 * 89.99961 * 13 12 2 33 33 H 1.09002 * 109.46993 * 209.99942 * 13 12 2 34 34 H 1.09003 * 109.47290 * 329.99725 * 13 12 2 35 35 H 1.08998 * 109.87978 * 300.44640 * 18 17 14 36 36 H 1.09003 * 109.87707 * 61.45176 * 18 17 14 37 37 H 1.08997 * 110.72115 * 140.55604 * 19 18 17 38 38 H 1.08997 * 110.72198 * 263.65797 * 19 18 17 39 39 H 1.07992 * 126.91010 * 0.02562 * 23 22 20 40 40 H 1.07999 * 126.74648 * 180.12084 * 24 23 22 41 41 H 1.09003 * 110.36203 * 274.74635 * 27 17 14 42 42 H 1.08998 * 110.36392 * 37.06466 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3283 -1.1157 4.0078 9 1 1.8377 -0.4127 5.2203 10 1 1.8338 -2.5160 4.0136 11 1 3.8133 -1.1152 4.0020 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 16 2.9704 0.1142 -2.2863 15 8 2.8227 -0.5644 -3.5259 16 8 2.6904 1.4974 -2.1192 17 7 4.5437 -0.1043 -1.8181 18 6 5.4213 -1.2025 -2.2486 19 6 6.7786 -1.0090 -1.5403 20 6 6.4089 -0.1336 -0.3138 21 1 6.0249 -0.7461 0.5020 22 7 7.5560 0.6639 0.1271 23 6 8.5187 1.1779 -0.6730 24 6 9.3732 1.8391 0.1423 25 7 8.9019 1.6926 1.3857 26 7 7.8244 0.9914 1.3426 27 6 5.2985 0.7738 -0.9055 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7082 1.1606 3.4845 32 1 0.7375 -2.1442 -1.9995 33 1 2.4628 -2.5818 -1.9866 34 1 1.5294 -2.5969 -0.4710 35 1 4.9859 -2.1594 -1.9607 36 1 5.5563 -1.1670 -3.3296 37 1 7.1869 -1.9678 -1.2207 38 1 7.4822 -0.4892 -2.1904 39 1 8.5896 1.0818 -1.7463 40 1 10.2626 2.3760 -0.1526 41 1 5.7382 1.6053 -1.4564 42 1 4.6492 1.1444 -0.1123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919471025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:55 Heat of formation + Delta-G solvation = 41.298557 kcal Electronic energy + Delta-G solvation = -27701.793437 eV Core-core repulsion = 23846.801680 eV Total energy + Delta-G solvation = -3854.991756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.29799 -38.79012 -36.88472 -36.24517 -35.43120 -34.10232 -32.67975 -31.17673 -30.30225 -29.19142 -28.88618 -25.62386 -25.25132 -23.79914 -22.99655 -22.18854 -20.86169 -20.68949 -18.85908 -17.94732 -17.32158 -17.01124 -16.50904 -16.26291 -15.68115 -15.20409 -15.03951 -14.74803 -14.30521 -13.91476 -13.69529 -13.44440 -13.40342 -13.19317 -12.80104 -12.40355 -12.09399 -12.02275 -11.90967 -11.75691 -11.72585 -11.52357 -11.49499 -11.29387 -11.20068 -11.03901 -10.92897 -10.90802 -10.52316 -10.29468 -10.17227 -10.11337 -9.46512 -9.41580 -9.01222 -8.54291 -8.08349 -6.15813 -4.25723 0.93452 1.54834 2.18922 2.56334 3.23540 3.25456 3.30406 3.32851 3.88420 3.91912 4.21690 4.29842 4.33090 4.52862 4.70582 4.89427 4.93499 4.96402 5.15035 5.15174 5.32146 5.34028 5.47869 5.50488 5.58815 5.68823 5.79082 5.96381 6.06802 6.09364 6.21971 6.26351 6.53454 6.58465 6.78930 6.81798 7.03242 7.36774 7.53067 7.69594 7.96515 8.17285 8.50129 8.76868 9.41834 10.88989 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010106 B = 0.005848 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.036550 B = 4786.679141 C = 6679.772593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.057 0.943 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.274 1.274 12 N -0.987 5.987 13 C 0.106 3.894 14 S 2.793 3.207 15 O -0.988 6.988 16 O -0.971 6.971 17 N -1.016 6.016 18 C 0.125 3.875 19 C -0.134 4.134 20 C 0.129 3.871 21 H 0.139 0.861 22 N -0.277 5.277 23 C -0.052 4.052 24 C -0.054 4.054 25 N -0.276 5.276 26 N -0.074 5.074 27 C 0.123 3.877 28 H 0.093 0.907 29 H 0.012 0.988 30 H 0.033 0.967 31 H 0.266 0.734 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.188 0.812 40 H 0.188 0.812 41 H 0.073 0.927 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.867 -4.376 -9.751 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.199 1.199 12 N -0.830 5.830 13 C -0.040 4.040 14 S 2.803 3.197 15 O -0.973 6.973 16 O -0.955 6.955 17 N -0.854 5.854 18 C -0.001 4.001 19 C -0.174 4.174 20 C 0.025 3.975 21 H 0.156 0.844 22 N -0.071 5.071 23 C -0.203 4.203 24 C -0.211 4.211 25 N -0.141 5.141 26 N -0.053 5.053 27 C -0.004 4.004 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.205 0.795 40 H 0.205 0.795 41 H 0.091 0.909 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.932 -3.839 -8.921 14.623 hybrid contribution 0.683 -0.677 0.042 0.963 sum 11.615 -4.516 -8.880 15.302 Atomic orbital electron populations 1.22053 0.97807 0.99735 1.00818 1.18767 0.92040 0.92615 0.80153 0.92492 1.21282 1.32391 1.13279 0.90053 0.91981 1.24910 0.94784 0.94885 0.98995 1.69859 1.35821 1.22411 1.24111 0.86628 0.79461 0.79580 0.82195 1.21154 1.20307 1.19945 1.57811 1.63518 1.21608 1.40042 1.21206 0.98991 0.81857 1.01950 1.01647 0.71436 0.73508 0.73098 1.93547 1.85485 1.76404 1.41817 1.93601 1.83132 1.32053 1.86741 1.59319 1.29483 1.35919 1.60666 1.21604 0.88771 0.90404 0.99308 1.23062 0.98217 1.00958 0.95146 1.23062 0.82975 0.92171 0.99287 0.84351 1.47401 1.18871 1.35035 1.05780 1.23588 0.92696 1.03816 1.00199 1.23596 1.03072 1.05008 0.89464 1.75150 1.04180 1.13173 1.21627 1.78459 1.11963 1.13522 1.01395 1.22169 0.93158 0.91710 0.93393 0.88826 0.96902 0.94797 0.92439 0.93719 0.93284 0.90051 0.90761 0.90372 0.88593 0.89374 0.79475 0.79490 0.90865 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.97 37.16 0.33 -3.00 16 2 C 0.27 6.22 2.62 -69.08 -0.18 6.03 16 3 H 0.06 1.48 6.91 -51.93 -0.36 1.12 16 4 C -0.53 -12.92 7.99 -34.44 -0.28 -13.19 16 5 H 0.06 1.45 7.33 -52.49 -0.38 1.07 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.80 11.32 55.43 0.63 -23.17 16 8 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.99 -19.20 3.12 -115.85 -0.36 -19.56 16 13 C 0.11 1.75 9.28 59.85 0.56 2.31 16 14 S 2.79 51.30 6.30 -107.50 -0.68 50.63 16 15 O -0.99 -18.75 16.79 -57.17 -0.96 -19.71 16 16 O -0.97 -21.14 16.28 -57.17 -0.93 -22.08 16 17 N -1.02 -14.56 3.75 -111.29 -0.42 -14.98 16 18 C 0.13 1.29 6.99 -3.07 -0.02 1.27 16 19 C -0.13 -1.09 6.37 -24.90 -0.16 -1.24 16 20 C 0.13 1.51 4.10 -65.66 -0.27 1.24 16 21 H 0.14 1.75 8.14 -51.93 -0.42 1.32 16 22 N -0.28 -3.53 3.37 -52.56 -0.18 -3.70 16 23 C -0.05 -0.52 10.66 -17.04 -0.18 -0.70 16 24 C -0.05 -0.60 12.05 -17.73 -0.21 -0.81 16 25 N -0.28 -4.25 12.41 30.24 0.38 -3.88 16 26 N -0.07 -1.20 13.16 60.35 0.79 -0.41 16 27 C 0.12 1.72 6.68 -2.41 -0.02 1.71 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.68 7.79 -51.93 -0.40 0.27 16 34 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.54 6.39 -51.93 -0.33 0.21 16 39 H 0.19 1.09 7.02 -52.49 -0.37 0.72 16 40 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -32.75 356.09 -7.77 -40.52 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.87 Total: 0.66 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -0.52 Total: -4.76 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: 0.84 Total: -65.70 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.89 Total: -41.78 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 51.30 SS G_CDS: -0.68 Total: 50.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.75 -7.77 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919471025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.821 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds