Wall clock time and date at job start Tue Mar 31 2020 05:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00650 * 2 1 3 5 5 H 1.08002 * 120.00516 * 119.99366 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99666 * 4 2 1 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 2 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 N 1.46506 * 109.46957 * 240.00311 * 2 1 3 13 13 C 1.46499 * 119.99954 * 300.00257 * 12 2 1 14 14 S 1.65597 * 119.99975 * 120.00074 * 12 2 1 15 15 O 1.42095 * 106.40187 * 203.54025 * 14 12 2 16 16 O 1.42103 * 106.40390 * 336.46185 * 14 12 2 17 17 N 1.65603 * 107.21797 * 90.00191 * 14 12 2 18 18 C 1.47019 * 125.65324 * 90.02204 * 17 14 12 19 19 C 1.54317 * 107.27527 * 181.02240 * 18 17 14 20 20 C 1.55156 * 102.94147 * 22.19686 * 19 18 17 21 21 H 1.09001 * 111.00707 * 82.61014 * 20 19 18 22 22 N 1.46504 * 111.00540 * 206.42157 * 20 19 18 23 23 C 1.35321 * 125.86495 * 33.26482 * 22 20 19 24 24 C 1.35353 * 106.17196 * 179.90494 * 23 22 20 25 25 N 1.33777 * 106.49504 * 0.34645 * 24 23 22 26 26 N 1.28625 * 108.88625 * 359.77843 * 25 24 23 27 27 C 1.47432 * 125.64675 * 269.71901 * 17 14 12 28 28 H 1.08994 * 109.46844 * 299.99958 * 1 2 3 29 29 H 1.08998 * 109.46846 * 59.99273 * 1 2 3 30 30 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 31 31 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47262 * 89.99961 * 13 12 2 33 33 H 1.09002 * 109.46993 * 209.99942 * 13 12 2 34 34 H 1.09003 * 109.47290 * 329.99725 * 13 12 2 35 35 H 1.08998 * 109.87978 * 300.44640 * 18 17 14 36 36 H 1.09003 * 109.87707 * 61.45176 * 18 17 14 37 37 H 1.08997 * 110.72115 * 140.55604 * 19 18 17 38 38 H 1.08997 * 110.72198 * 263.65797 * 19 18 17 39 39 H 1.07992 * 126.91010 * 0.02562 * 23 22 20 40 40 H 1.07999 * 126.74648 * 180.12084 * 24 23 22 41 41 H 1.09003 * 110.36203 * 274.74635 * 27 17 14 42 42 H 1.08998 * 110.36392 * 37.06466 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3283 -1.1157 4.0078 9 1 1.8377 -0.4127 5.2203 10 1 1.8338 -2.5160 4.0136 11 1 3.8133 -1.1152 4.0020 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 16 2.9704 0.1142 -2.2863 15 8 2.8227 -0.5644 -3.5259 16 8 2.6904 1.4974 -2.1192 17 7 4.5437 -0.1043 -1.8181 18 6 5.4213 -1.2025 -2.2486 19 6 6.7786 -1.0090 -1.5403 20 6 6.4089 -0.1336 -0.3138 21 1 6.0249 -0.7461 0.5020 22 7 7.5560 0.6639 0.1271 23 6 8.5187 1.1779 -0.6730 24 6 9.3732 1.8391 0.1423 25 7 8.9019 1.6926 1.3857 26 7 7.8244 0.9914 1.3426 27 6 5.2985 0.7738 -0.9055 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7082 1.1606 3.4845 32 1 0.7375 -2.1442 -1.9995 33 1 2.4628 -2.5818 -1.9866 34 1 1.5294 -2.5969 -0.4710 35 1 4.9859 -2.1594 -1.9607 36 1 5.5563 -1.1670 -3.3296 37 1 7.1869 -1.9678 -1.2207 38 1 7.4822 -0.4892 -2.1904 39 1 8.5896 1.0818 -1.7463 40 1 10.2626 2.3760 -0.1526 41 1 5.7382 1.6053 -1.4564 42 1 4.6492 1.1444 -0.1123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919471025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:54 Heat of formation + Delta-G solvation = 16.387557 kcal Electronic energy + Delta-G solvation = -27702.873659 eV Core-core repulsion = 23846.801680 eV Total energy + Delta-G solvation = -3856.071978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.22832 -39.75298 -38.43566 -37.91485 -36.98774 -35.09588 -34.53322 -32.06853 -31.21746 -30.95986 -29.87348 -27.27830 -27.02039 -24.83039 -23.88859 -23.12734 -22.57078 -21.63057 -20.12192 -19.11560 -18.58492 -18.50843 -18.20624 -17.38162 -17.08380 -16.53179 -16.18066 -15.89316 -15.36733 -15.29988 -14.82734 -14.78148 -14.60504 -14.43787 -14.23909 -13.75877 -13.48762 -13.37807 -13.29242 -13.20544 -13.02882 -12.98205 -12.77743 -12.72105 -12.65994 -12.61710 -12.26500 -12.15251 -11.97822 -11.92872 -11.86370 -11.25894 -11.08454 -10.51614 -10.34620 -10.15018 -9.69307 -8.11942 -6.26384 -0.48764 0.65339 1.27842 1.43309 1.46484 1.51033 1.66195 1.94816 2.42287 2.50030 3.00012 3.17646 3.23379 3.34506 3.66681 3.75702 4.01810 4.05347 4.12666 4.22355 4.33530 4.39182 4.53616 4.60364 4.68541 4.74084 4.78820 4.87781 4.90577 4.94024 4.99382 5.05015 5.13271 5.23217 5.26259 5.30532 5.58995 5.66241 5.70056 5.83035 6.07280 6.25895 6.82980 7.43883 7.54894 8.92370 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010106 B = 0.005848 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.036550 B = 4786.679141 C = 6679.772593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.021 0.979 4 C -0.525 4.525 5 H 0.072 0.928 6 C 0.020 3.980 7 N -0.918 5.918 8 Si 0.950 3.050 9 H -0.293 1.293 10 H -0.265 1.265 11 H -0.274 1.274 12 N -0.996 5.996 13 C 0.099 3.901 14 S 2.809 3.191 15 O -0.992 6.992 16 O -1.013 7.013 17 N -1.014 6.014 18 C 0.112 3.888 19 C -0.115 4.115 20 C 0.131 3.869 21 H 0.122 0.878 22 N -0.279 5.279 23 C -0.032 4.032 24 C -0.061 4.061 25 N -0.313 5.313 26 N -0.134 5.134 27 C 0.122 3.878 28 H 0.068 0.932 29 H 0.018 0.982 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.237 0.763 40 H 0.223 0.777 41 H 0.086 0.914 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.198 -6.398 -11.802 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.039 0.961 4 C -0.564 4.564 5 H 0.090 0.910 6 C -0.180 4.180 7 N -0.557 5.557 8 Si 0.776 3.224 9 H -0.219 1.219 10 H -0.190 1.190 11 H -0.199 1.199 12 N -0.838 5.838 13 C -0.046 4.046 14 S 2.820 3.180 15 O -0.976 6.976 16 O -0.998 6.998 17 N -0.854 5.854 18 C -0.012 4.012 19 C -0.154 4.154 20 C 0.027 3.973 21 H 0.140 0.860 22 N -0.072 5.072 23 C -0.183 4.183 24 C -0.219 4.219 25 N -0.178 5.178 26 N -0.112 5.112 27 C -0.006 4.006 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.253 0.747 40 H 0.239 0.761 41 H 0.105 0.895 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.248 -5.903 -10.974 18.187 hybrid contribution 0.035 -0.019 0.554 0.556 sum 13.283 -5.922 -10.420 17.891 Atomic orbital electron populations 1.21941 0.97905 1.00146 0.99882 1.18378 0.91964 0.91214 0.81517 0.96083 1.21554 1.31491 1.13068 0.90333 0.90973 1.25619 0.95185 0.95516 1.01676 1.70001 1.37423 1.23953 1.24292 0.85736 0.78716 0.78995 0.78955 1.21860 1.19025 1.19940 1.57713 1.64583 1.22768 1.38694 1.21421 1.00642 0.80246 1.02320 1.00904 0.71982 0.72373 0.72749 1.93534 1.86033 1.76205 1.41797 1.93545 1.84284 1.34712 1.87211 1.58902 1.28548 1.37368 1.60610 1.22041 0.89065 0.89291 1.00805 1.23118 0.97504 1.01675 0.93130 1.22986 0.82424 0.91714 1.00209 0.86023 1.47489 1.19279 1.34932 1.05524 1.24378 0.90647 1.01390 1.01899 1.24310 1.04277 1.05081 0.88213 1.75081 1.04644 1.13809 1.24247 1.78433 1.13336 1.15991 1.03438 1.22135 0.93226 0.92710 0.92523 0.91311 0.96303 0.93571 0.92831 0.93045 0.90148 0.90495 0.89666 0.88381 0.86043 0.86288 0.74711 0.76078 0.89547 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 8.97 71.98 0.65 -5.92 16 2 C 0.27 13.05 2.62 44.24 0.12 13.16 16 3 H 0.02 1.17 6.91 -2.39 -0.02 1.15 16 4 C -0.53 -25.83 7.99 25.60 0.20 -25.63 16 5 H 0.07 3.33 7.33 -2.91 -0.02 3.31 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.92 -51.13 11.32 21.45 0.24 -50.88 16 8 Si 0.95 41.70 29.54 68.60 2.03 43.72 16 9 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 N -1.00 -38.41 3.12 -520.44 -1.62 -40.04 16 13 C 0.10 3.09 9.28 127.77 1.19 4.27 16 14 S 2.81 101.67 6.30 -56.49 -0.36 101.31 16 15 O -0.99 -35.70 16.79 -128.00 -2.15 -37.85 16 16 O -1.01 -45.31 16.28 -128.00 -2.08 -47.39 16 17 N -1.01 -27.49 3.75 -506.02 -1.90 -29.38 16 18 C 0.11 1.88 6.99 86.73 0.61 2.48 16 19 C -0.11 -1.34 6.37 31.78 0.20 -1.14 16 20 C 0.13 2.83 4.10 46.46 0.19 3.02 16 21 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 22 N -0.28 -6.64 3.37 -320.22 -1.08 -7.72 16 23 C -0.03 -0.52 10.66 83.49 0.89 0.37 16 24 C -0.06 -1.20 12.05 83.73 1.01 -0.19 16 25 N -0.31 -9.56 12.41 -58.25 -0.72 -10.28 16 26 N -0.13 -4.36 13.16 37.02 0.49 -3.87 16 27 C 0.12 3.35 6.68 86.93 0.58 3.93 16 28 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 2.00 7.67 -2.39 -0.02 1.98 16 31 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.98 7.79 -2.39 -0.02 1.96 16 34 H 0.08 2.46 7.02 -2.39 -0.02 2.45 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 0.69 6.39 -2.39 -0.02 0.68 16 39 H 0.24 1.26 7.02 -2.91 -0.02 1.24 16 40 H 0.22 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.30 356.09 -0.05 -75.35 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.03 Total: 11.16 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 6.08 Total: -4.13 kcal Atomic # 7 Polarization: -137.58 SS G_CDS: -4.60 Total: -142.17 kcal Atomic # 8 Polarization: -81.01 SS G_CDS: -4.23 Total: -85.24 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 101.67 SS G_CDS: -0.36 Total: 101.31 kcal Total: -75.30 -0.05 -75.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919471025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.741 kcal (2) G-P(sol) polarization free energy of solvation -75.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds