Wall clock time and date at job start Tue Mar 31 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99873 * 2 1 4 4 H 1.48505 * 109.46510 * 240.00060 * 3 2 1 5 5 H 1.48496 * 109.47218 * 120.00078 * 3 2 1 6 6 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 155.62352 * 7 2 1 9 9 N 1.36937 * 119.99845 * 335.62295 * 7 2 1 10 10 C 1.48145 * 127.83797 * 158.92211 * 9 7 2 11 11 C 1.54389 * 104.62096 * 140.41350 * 10 9 7 12 12 H 1.08988 * 117.61536 * 244.78280 * 11 10 9 13 13 C 1.54290 * 104.95854 * 23.86373 * 11 10 9 14 14 H 1.08993 * 121.81592 * 222.17776 * 13 11 10 15 15 C 1.48153 * 127.83615 * 338.59902 * 9 7 2 16 16 C 1.53005 * 118.12025 * 89.20542 * 11 10 9 17 17 H 1.08992 * 117.44400 * 16.10836 * 16 11 10 18 18 N 1.46498 * 117.43970 * 160.85542 * 16 11 10 19 19 C 1.34770 * 119.99966 * 204.99849 * 18 16 11 20 20 O 1.21572 * 120.00047 * 0.02562 * 19 18 16 21 21 C 1.47685 * 120.00203 * 179.97438 * 19 18 16 22 22 C 1.39911 * 120.38474 * 359.72764 * 21 19 18 23 23 N 1.31453 * 121.13552 * 179.71668 * 22 21 19 24 24 C 1.32473 * 121.80898 * 0.54306 * 23 22 21 25 25 N 1.37877 * 133.44946 * 179.74175 * 24 23 22 26 26 H 0.97002 * 126.25057 * 359.97438 * 25 24 23 27 27 C 1.36509 * 107.49653 * 180.02562 * 25 24 23 28 28 O 1.35272 * 125.02036 * 179.97438 * 27 25 24 29 29 N 1.30714 * 109.95924 * 359.97438 * 27 25 24 30 30 C 1.35897 * 109.39469 * 0.02562 * 29 27 25 31 31 C 1.39410 * 133.62950 * 180.02562 * 30 29 27 32 32 H 0.96998 * 119.99845 * 174.47055 * 1 2 3 33 33 H 1.09007 * 110.40219 * 259.19721 * 10 9 7 34 34 H 1.08993 * 110.40859 * 21.50705 * 10 9 7 35 35 H 1.09000 * 110.40870 * 338.36725 * 15 9 7 36 36 H 1.09000 * 110.40347 * 100.80438 * 15 9 7 37 37 H 0.97004 * 119.99665 * 24.99705 * 18 16 11 38 38 H 1.07997 * 119.43707 * 359.97213 * 22 21 19 39 39 H 0.96697 * 114.00073 * 270.01428 * 28 27 25 40 40 H 1.07998 * 120.97408 * 0.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 3.1039 1.6965 1.2124 6 1 1.2852 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0181 -1.2440 -0.3855 9 7 1.4172 -2.3350 0.4905 10 6 1.7765 -3.7440 0.2075 11 6 1.6235 -4.4653 1.5639 12 1 2.5224 -4.8803 2.0196 13 6 0.6307 -3.5985 2.3661 14 1 0.7826 -3.3798 3.4230 15 6 0.2748 -2.4294 1.4291 16 6 0.2571 -5.0568 1.9161 17 1 -0.4600 -5.1826 1.1050 18 7 0.2146 -6.0829 2.9608 19 6 -0.7898 -6.9812 2.9826 20 8 -1.6604 -6.9403 2.1350 21 6 -0.8324 -8.0161 4.0354 22 6 0.1689 -8.0748 5.0108 23 7 0.1427 -8.9861 5.9578 24 6 -0.8204 -9.8931 6.0276 25 7 -1.0795 -10.9365 6.8907 26 1 -0.5430 -11.1940 7.6568 27 6 -2.2284 -11.5418 6.4697 28 8 -2.8058 -12.6106 7.0649 29 7 -2.6880 -10.9361 5.4065 30 6 -1.8624 -9.9069 5.0810 31 6 -1.8703 -8.9515 4.0659 32 1 -0.4850 -0.8361 -0.0809 33 1 1.0942 -4.1697 -0.5284 34 1 2.8053 -3.8102 -0.1463 35 1 0.1728 -1.5052 1.9979 36 1 -0.6455 -2.6467 0.8869 37 1 0.9095 -6.1158 3.6368 38 1 0.9751 -7.3566 4.9878 39 1 -2.5002 -13.4627 6.7250 40 1 -2.6558 -8.9342 3.3249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960673578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:55 Heat of formation + Delta-G solvation = 86.123641 kcal Electronic energy + Delta-G solvation = -26164.946370 eV Core-core repulsion = 22176.454424 eV Total energy + Delta-G solvation = -3988.491946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -42.96708 -40.31672 -39.14287 -38.33302 -37.36785 -34.77487 -34.26211 -32.96937 -31.84930 -30.42674 -29.54097 -27.43614 -25.68528 -24.60951 -24.21717 -22.48533 -22.02645 -20.89870 -20.38435 -19.87397 -19.41000 -18.75565 -18.35085 -17.47475 -17.26092 -16.79800 -16.35657 -15.89162 -15.27588 -14.77606 -14.63618 -14.24532 -13.93487 -13.78023 -13.64596 -13.49492 -13.16293 -12.97949 -12.83890 -12.37853 -11.96748 -11.75720 -11.58268 -11.52843 -10.85060 -10.71182 -10.57913 -10.36384 -10.29817 -10.04172 -9.73480 -9.66289 -9.47790 -9.30593 -9.06848 -8.58995 -8.40727 -7.00997 -6.14189 -3.20553 0.13068 0.28015 1.47344 1.95276 2.55759 2.71116 3.04635 3.38675 3.49006 3.52338 3.65660 3.70762 4.06669 4.09560 4.26620 4.30809 4.37967 4.55464 4.75306 4.91287 5.10238 5.17937 5.27881 5.40471 5.47697 5.50232 5.68986 5.75305 5.82248 5.91984 5.93217 6.03351 6.35956 6.56923 6.59919 6.72897 6.78830 6.95544 6.96060 6.98830 7.20022 7.35758 7.72590 8.04148 8.43204 8.95835 9.76605 10.39072 11.21721 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.042308 B = 0.001914 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.657283 B =14624.366876 C =14813.855665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.025 4.025 3 Si 1.070 2.930 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.154 3.846 11 C -0.174 4.174 12 H 0.105 0.895 13 C -0.176 4.176 14 H 0.108 0.892 15 C 0.165 3.835 16 C 0.096 3.904 17 H 0.137 0.863 18 N -0.690 5.690 19 C 0.571 3.429 20 O -0.527 6.527 21 C -0.191 4.191 22 C 0.177 3.823 23 N -0.481 5.481 24 C 0.268 3.732 25 N -0.587 5.587 26 H 0.430 0.570 27 C 0.467 3.533 28 O -0.436 6.436 29 N -0.466 5.466 30 C 0.006 3.994 31 C 0.051 3.949 32 H 0.270 0.730 33 H 0.027 0.973 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.398 0.602 38 H 0.173 0.827 39 H 0.415 0.585 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 -25.319 15.523 29.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.227 4.227 3 Si 0.899 3.101 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.321 5.321 10 C 0.027 3.973 11 C -0.195 4.195 12 H 0.123 0.877 13 C -0.198 4.198 14 H 0.126 0.874 15 C 0.039 3.961 16 C -0.010 4.010 17 H 0.155 0.845 18 N -0.339 5.339 19 C 0.357 3.643 20 O -0.403 6.403 21 C -0.199 4.199 22 C 0.009 3.991 23 N -0.193 5.193 24 C 0.032 3.968 25 N -0.214 5.214 26 H 0.271 0.729 27 C 0.161 3.839 28 O -0.237 6.237 29 N -0.197 5.197 30 C -0.114 4.114 31 C 0.023 3.977 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.234 0.766 38 H 0.190 0.810 39 H 0.274 0.726 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.055 -23.466 15.436 28.107 hybrid contribution 1.251 -2.255 0.603 2.648 sum 0.196 -25.721 16.039 30.312 Atomic orbital electron populations 1.70763 1.06537 1.30401 1.47905 1.25888 0.96605 1.01264 0.98965 0.83456 0.74678 0.75792 0.76171 1.21920 1.22046 1.20992 1.19721 0.97219 0.86811 1.42248 0.91724 1.45255 1.37311 1.00155 1.49355 1.21134 0.98751 0.86077 0.91289 1.24340 0.92560 1.02000 1.00565 0.87703 1.25089 1.04403 0.90844 0.99451 0.87410 1.21041 0.90812 0.94309 0.89968 1.22548 0.99816 0.86079 0.92583 0.84498 1.45206 1.26789 1.30809 1.31053 1.17701 0.81811 0.80630 0.84179 1.90825 1.37652 1.72970 1.38868 1.20677 0.98921 1.00158 1.00126 1.22767 0.96066 0.93100 0.87216 1.66377 1.24095 1.03687 1.25156 1.18713 0.94697 0.91854 0.91538 1.43042 1.23556 1.26970 1.27811 0.72919 1.20179 0.83112 0.91224 0.89350 1.84870 1.63042 1.14881 1.60943 1.70764 1.28025 1.09344 1.11578 1.19324 0.94596 0.98549 0.98943 1.20880 0.95927 0.87332 0.93571 0.91942 0.95530 0.92735 0.91341 0.95277 0.76644 0.81037 0.72555 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.69 12.82 55.49 0.71 -26.98 16 2 C -0.03 -0.72 5.12 -17.43 -0.09 -0.81 16 3 Si 1.07 25.14 29.98 -169.99 -5.10 20.05 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.33 -9.32 10.19 -15.06 -0.15 -9.48 16 8 H 0.06 1.79 7.94 -52.49 -0.42 1.38 16 9 N -0.60 -15.02 3.23 -169.10 -0.55 -15.56 16 10 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 11 C -0.17 -2.85 6.91 -89.21 -0.62 -3.47 16 12 H 0.10 1.48 8.14 -51.94 -0.42 1.06 16 13 C -0.18 -3.11 7.21 -87.19 -0.63 -3.74 16 14 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 15 C 0.16 3.79 5.01 -2.62 -0.01 3.78 16 16 C 0.10 1.47 6.20 -65.69 -0.41 1.07 16 17 H 0.14 2.41 7.40 -51.93 -0.38 2.03 16 18 N -0.69 -8.18 5.52 -52.64 -0.29 -8.48 16 19 C 0.57 7.43 7.77 -12.41 -0.10 7.33 16 20 O -0.53 -8.91 15.97 5.30 0.08 -8.83 16 21 C -0.19 -2.00 5.89 -104.85 -0.62 -2.62 16 22 C 0.18 1.53 10.69 -17.09 -0.18 1.34 16 23 N -0.48 -4.60 10.36 -11.92 -0.12 -4.73 16 24 C 0.27 2.58 8.45 -155.42 -1.31 1.27 16 25 N -0.59 -3.85 6.23 -13.36 -0.08 -3.93 16 26 H 0.43 1.45 8.96 -40.82 -0.37 1.09 16 27 C 0.47 3.46 9.39 -88.84 -0.83 2.62 16 28 O -0.44 -1.85 13.63 -17.51 -0.24 -2.09 16 29 N -0.47 -4.95 11.32 -12.21 -0.14 -5.09 16 30 C 0.01 0.06 7.22 -84.67 -0.61 -0.55 16 31 C 0.05 0.55 9.75 -38.58 -0.38 0.18 16 32 H 0.27 8.19 6.41 -40.82 -0.26 7.93 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.73 7.47 -51.93 -0.39 1.35 16 36 H 0.03 0.70 7.66 -51.93 -0.40 0.30 16 37 H 0.40 3.38 6.86 -40.82 -0.28 3.10 16 38 H 0.17 0.94 6.39 -52.49 -0.34 0.60 16 39 H 0.42 -0.58 9.06 45.56 0.41 -0.16 16 40 H 0.16 1.76 7.72 -52.49 -0.41 1.35 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -37.22 345.66 -9.78 -46.99 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.31 Total: 3.36 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -5.96 Total: 0.08 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -0.47 Total: -64.77 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.15 Total: -10.92 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.22 -9.78 -46.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960673578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.119 kcal (2) G-P(sol) polarization free energy of solvation -37.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds