Wall clock time and date at job start Tue Mar 31 2020 05:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00199 * 2 1 4 4 H 1.48490 * 109.47096 * 274.81403 * 3 2 1 5 5 H 1.48506 * 109.46897 * 34.81480 * 3 2 1 6 6 H 1.48498 * 109.47276 * 154.81074 * 3 2 1 7 7 C 1.38813 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99759 * 170.81621 * 7 2 1 9 9 N 1.36930 * 120.00260 * 350.81318 * 7 2 1 10 10 C 1.48147 * 127.84320 * 164.39029 * 9 7 2 11 11 C 1.54388 * 104.62031 * 140.41513 * 10 9 7 12 12 H 1.09001 * 117.61158 * 242.76782 * 11 10 9 13 13 C 1.54144 * 106.22666 * 23.25227 * 11 10 9 14 14 H 1.09005 * 121.78883 * 221.54710 * 13 11 10 15 15 C 1.48150 * 127.83784 * 344.38933 * 9 7 2 16 16 C 1.52997 * 118.12231 * 87.19363 * 11 10 9 17 17 H 1.08997 * 117.44624 * 14.46468 * 16 11 10 18 18 N 1.46496 * 117.44297 * 159.21439 * 16 11 10 19 19 C 1.34782 * 120.00370 * 205.16851 * 18 16 11 20 20 O 1.21561 * 119.99271 * 359.97438 * 19 18 16 21 21 C 1.47846 * 120.00535 * 179.97438 * 19 18 16 22 22 C 1.39713 * 119.43764 * 180.02562 * 21 19 18 23 23 C 1.37005 * 119.58914 * 180.02562 * 22 21 19 24 24 C 1.39891 * 118.37158 * 0.26688 * 23 22 21 25 25 N 1.35428 * 133.68394 * 180.47030 * 24 23 22 26 26 C 1.30927 * 109.56770 * 179.51846 * 25 24 23 27 27 O 1.35188 * 124.99432 * 179.75728 * 26 25 24 28 28 N 1.36383 * 110.00594 * 359.73218 * 26 25 24 29 29 H 0.97006 * 126.32079 * 179.97438 * 28 26 25 30 30 C 1.38253 * 107.36268 * 0.02562 * 28 26 25 31 31 N 1.31768 * 133.71248 * 180.02562 * 30 28 26 32 32 H 0.96997 * 119.99566 * 359.97438 * 1 2 3 33 33 H 1.09001 * 110.40322 * 21.62653 * 10 9 7 34 34 H 1.09005 * 110.50423 * 259.25036 * 10 9 7 35 35 H 1.09006 * 110.40643 * 338.36953 * 15 9 7 36 36 H 1.08995 * 110.40791 * 100.79754 * 15 9 7 37 37 H 0.96999 * 120.00170 * 25.16268 * 18 16 11 38 38 H 1.08001 * 120.20590 * 359.96992 * 22 21 19 39 39 H 1.08003 * 120.81033 * 180.02562 * 23 22 21 40 40 H 0.96705 * 113.99325 * 269.96785 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3960 2.1051 -1.3950 5 1 1.5023 2.6212 0.7994 6 1 3.5950 1.4129 0.5959 7 6 2.0102 -1.2022 -0.0005 8 1 3.0798 -1.2081 -0.1498 9 7 1.3388 -2.3805 0.1883 10 6 1.8191 -3.7546 -0.0874 11 6 1.2877 -4.5971 1.0921 12 1 2.0207 -5.0706 1.7454 13 6 0.0725 -3.8333 1.6541 14 1 -0.1000 -3.7377 2.7262 15 6 -0.0330 -2.5706 0.7146 16 6 -0.1170 -5.1926 0.9779 17 1 -0.5797 -5.2026 -0.0090 18 7 -0.4379 -6.3351 1.8369 19 6 -1.3980 -7.2064 1.4687 20 8 -1.9980 -7.0439 0.4240 21 6 -1.7216 -8.3597 2.3353 22 6 -2.7186 -9.2559 1.9419 23 6 -3.0213 -10.3254 2.7428 24 6 -2.3164 -10.4789 3.9414 25 7 -2.3519 -11.3968 4.9365 26 6 -1.4658 -11.0882 5.8495 27 8 -1.2415 -11.7923 6.9816 28 7 -0.8018 -9.9523 5.4903 29 1 -0.0979 -9.5145 5.9942 30 6 -1.3180 -9.5392 4.2761 31 7 -1.0607 -8.5253 3.4749 32 1 -0.4849 0.8401 0.0004 33 1 2.9086 -3.7786 -0.1113 34 1 1.4109 -4.1199 -1.0298 35 1 -0.3409 -1.7014 1.2959 36 1 -0.7320 -2.7497 -0.1022 37 1 0.0406 -6.4645 2.6706 38 1 -3.2481 -9.1060 1.0126 39 1 -3.7881 -11.0305 2.4577 40 1 -1.7805 -11.5103 7.7334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961609466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:00 Heat of formation + Delta-G solvation = 89.769168 kcal Electronic energy + Delta-G solvation = -26278.793795 eV Core-core repulsion = 22290.459931 eV Total energy + Delta-G solvation = -3988.333864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.90153 -40.25732 -39.07486 -38.20627 -37.22240 -34.64377 -34.22401 -32.70849 -31.75415 -30.51067 -29.69086 -26.99950 -25.85441 -24.85947 -23.83468 -22.34559 -22.01974 -20.76717 -20.39042 -19.83482 -19.29686 -18.61232 -17.95090 -17.73206 -16.85233 -16.58478 -16.21433 -15.45746 -15.38889 -14.78666 -14.61734 -14.53822 -13.80969 -13.76577 -13.47694 -13.22771 -12.77897 -12.73157 -12.64193 -12.23898 -11.80374 -11.56591 -11.55939 -11.46333 -10.99387 -10.83882 -10.42290 -10.30202 -10.21649 -10.14600 -9.75920 -9.70702 -9.46252 -9.19930 -8.95726 -8.74199 -8.33018 -6.87696 -5.80502 -3.14868 -0.08883 0.74705 1.48899 1.85758 2.63088 2.87905 3.05407 3.37838 3.43319 3.45470 3.50741 3.69002 4.02980 4.32455 4.32914 4.46020 4.55658 4.59504 5.12297 5.15847 5.22796 5.37296 5.40487 5.51332 5.55149 5.60005 5.80290 5.88978 5.93489 6.03042 6.05522 6.18956 6.51012 6.68320 6.73992 6.83414 6.87339 7.00184 7.15874 7.34756 7.53101 7.56837 7.71162 8.14756 8.19778 9.10114 9.72770 10.49832 11.33821 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.026739 B = 0.002094 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.892601 B =13369.906186 C =13949.835532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.156 3.844 11 C -0.182 4.182 12 H 0.102 0.898 13 C -0.181 4.181 14 H 0.106 0.894 15 C 0.188 3.812 16 C 0.090 3.910 17 H 0.135 0.865 18 N -0.675 5.675 19 C 0.574 3.426 20 O -0.523 6.523 21 C 0.128 3.872 22 C -0.118 4.118 23 C -0.025 4.025 24 C 0.035 3.965 25 N -0.479 5.479 26 C 0.476 3.524 27 O -0.437 6.437 28 N -0.586 5.586 29 H 0.431 0.569 30 C 0.248 3.752 31 N -0.451 5.451 32 H 0.255 0.745 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.089 0.911 36 H 0.031 0.969 37 H 0.408 0.592 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 -22.936 13.544 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.029 3.971 11 C -0.203 4.203 12 H 0.120 0.880 13 C -0.202 4.202 14 H 0.124 0.876 15 C 0.062 3.938 16 C -0.016 4.016 17 H 0.153 0.847 18 N -0.323 5.323 19 C 0.358 3.642 20 O -0.398 6.398 21 C -0.020 4.020 22 C -0.141 4.141 23 C -0.053 4.053 24 C -0.087 4.087 25 N -0.211 5.211 26 C 0.171 3.829 27 O -0.239 6.239 28 N -0.214 5.214 29 H 0.272 0.728 30 C 0.010 3.990 31 N -0.168 5.168 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.243 0.757 38 H 0.181 0.819 39 H 0.171 0.829 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -4.557 -23.018 12.794 26.726 hybrid contribution 0.837 1.141 1.274 1.904 sum -3.720 -21.877 14.068 26.274 Atomic orbital electron populations 1.69898 1.05054 1.25472 1.55594 1.24914 0.95655 0.98024 1.01707 0.86093 0.78726 0.83280 0.77582 1.21468 1.21570 1.20535 1.18983 0.90823 0.82244 1.43476 0.90524 1.45129 1.13640 0.99992 1.72853 1.21134 0.97231 0.85829 0.92902 1.24249 0.90208 1.02479 1.03340 0.87991 1.25462 1.01682 0.93029 1.00065 0.87624 1.21667 0.86794 0.92204 0.93155 1.21983 0.99072 0.84459 0.96039 0.84747 1.45249 1.37208 1.25261 1.24605 1.17585 0.80362 0.81351 0.84889 1.90836 1.51291 1.74243 1.23479 1.21005 0.94394 0.96269 0.90339 1.21640 0.97439 0.93369 1.01645 1.20492 0.97888 0.97237 0.89657 1.19673 0.98748 0.93624 0.96633 1.70661 1.20516 1.26858 1.03039 1.20225 0.89535 0.82913 0.90271 1.84834 1.65715 1.55063 1.18269 1.43051 1.35839 1.23691 1.18809 0.72828 1.18417 0.96158 0.95138 0.89334 1.66176 1.27484 1.19665 1.03439 0.93498 0.92970 0.95375 0.89239 0.95091 0.75679 0.81941 0.82864 0.72422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.71 10.87 55.49 0.60 -26.11 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.81 29.56 -169.99 -5.03 16.79 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 9 N -0.59 -15.13 3.38 -166.70 -0.56 -15.70 16 10 C 0.16 3.25 7.04 -2.41 -0.02 3.24 16 11 C -0.18 -3.20 6.97 -89.30 -0.62 -3.83 16 12 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 13 C -0.18 -3.42 7.34 -87.43 -0.64 -4.06 16 14 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 15 C 0.19 4.53 5.76 -0.54 0.00 4.52 16 16 C 0.09 1.52 5.93 -67.93 -0.40 1.12 16 17 H 0.13 2.52 7.40 -51.93 -0.38 2.14 16 18 N -0.68 -9.62 5.55 -54.75 -0.30 -9.92 16 19 C 0.57 8.35 7.80 -12.33 -0.10 8.25 16 20 O -0.52 -9.05 15.85 5.31 0.08 -8.97 16 21 C 0.13 1.54 6.74 -82.98 -0.56 0.98 16 22 C -0.12 -1.17 9.55 -39.48 -0.38 -1.54 16 23 C -0.03 -0.22 10.16 -39.41 -0.40 -0.62 16 24 C 0.03 0.36 7.24 -84.56 -0.61 -0.25 16 25 N -0.48 -4.82 11.30 -12.11 -0.14 -4.96 16 26 C 0.48 3.54 9.39 -88.78 -0.83 2.71 16 27 O -0.44 -1.88 13.62 -17.26 -0.24 -2.12 16 28 N -0.59 -4.17 6.25 -13.33 -0.08 -4.26 16 29 H 0.43 1.85 8.96 -40.82 -0.37 1.48 16 30 C 0.25 2.53 8.46 -155.52 -1.32 1.22 16 31 N -0.45 -5.12 9.54 -8.78 -0.08 -5.21 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 2.39 6.52 -51.93 -0.34 2.06 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.41 5.08 8.13 -40.82 -0.33 4.75 16 38 H 0.16 1.43 7.61 -52.49 -0.40 1.03 16 39 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.42 -0.52 9.06 45.56 0.41 -0.11 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -35.07 347.96 -10.12 -45.20 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.49 Total: 4.98 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -6.13 Total: 5.02 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.57 Total: -66.15 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.15 Total: -11.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.07 -10.12 -45.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961609466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.964 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds