Wall clock time and date at job start Tue Mar 31 2020 05:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99875 * 2 1 4 4 H 1.48506 * 109.47458 * 273.98136 * 3 2 1 5 5 H 1.48500 * 109.47402 * 33.97851 * 3 2 1 6 6 H 1.48500 * 109.47186 * 153.98158 * 3 2 1 7 7 C 1.38806 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 188.84464 * 7 2 1 9 9 N 1.36934 * 120.00292 * 8.84322 * 7 2 1 10 10 C 1.51835 * 127.60929 * 14.12360 * 9 7 2 11 11 C 1.54393 * 102.86455 * 140.54838 * 10 9 7 12 12 H 1.08998 * 117.61774 * 243.60090 * 11 10 9 13 13 C 1.54286 * 106.22147 * 24.12147 * 11 10 9 14 14 H 1.09000 * 121.81787 * 221.53025 * 13 11 10 15 15 C 1.48146 * 127.84066 * 194.47117 * 9 7 2 16 16 C 1.52993 * 59.72336 * 113.48760 * 13 11 10 17 17 H 1.09000 * 117.40782 * 252.33779 * 16 13 11 18 18 N 1.46498 * 117.44574 * 107.64773 * 16 13 11 19 19 C 1.34772 * 120.00361 * 135.75784 * 18 16 13 20 20 O 1.21684 * 120.00051 * 0.02562 * 19 18 16 21 21 C 1.46827 * 120.00134 * 180.02562 * 19 18 16 22 22 C 1.41289 * 126.50022 * 0.02562 * 21 19 18 23 23 N 1.30377 * 108.46426 * 179.97438 * 22 21 19 24 24 N 1.39986 * 109.30422 * 0.02562 * 23 22 21 25 25 C 1.35997 * 108.16614 * 359.72845 * 24 23 22 26 26 N 1.37175 * 120.55142 * 180.28904 * 25 24 23 27 27 H 0.97009 * 119.88000 * 180.18101 * 26 25 24 28 28 C 1.36352 * 120.24618 * 0.20116 * 26 25 24 29 29 C 1.35246 * 119.82908 * 359.97361 * 28 26 25 30 30 C 1.34860 * 131.92962 * 179.97438 * 24 23 22 31 31 O 1.21816 * 120.10835 * 359.97438 * 30 24 23 32 32 H 0.97007 * 119.99966 * 359.97438 * 1 2 3 33 33 H 1.08997 * 112.25961 * 21.87091 * 10 9 7 34 34 H 1.09000 * 110.21894 * 258.27750 * 10 9 7 35 35 H 1.09000 * 110.41245 * 100.79653 * 15 9 7 36 36 H 1.09005 * 110.40531 * 338.36077 * 15 9 7 37 37 H 0.97002 * 119.99804 * 315.76100 * 18 16 13 38 38 H 1.08002 * 125.77150 * 0.03516 * 22 21 19 39 39 H 1.07997 * 120.08875 * 179.97438 * 28 26 25 40 40 H 1.07995 * 120.15556 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4135 2.0951 -1.3967 5 1 1.4922 2.6269 0.7825 6 1 3.5873 1.4174 0.6142 7 6 2.0102 -1.2021 -0.0005 8 1 3.0806 -1.2078 0.1433 9 7 1.3378 -2.3809 -0.1834 10 6 -0.0823 -2.5692 -0.6865 11 6 0.0376 -3.8094 -1.5982 12 1 -0.1715 -3.6782 -2.6598 13 6 1.2724 -4.5907 -1.1029 14 1 1.9831 -5.0414 -1.7956 15 6 1.8279 -3.7556 0.0710 16 6 -0.1278 -5.1909 -0.9618 17 1 -0.5564 -5.2347 0.0395 18 7 -0.4773 -6.3046 -1.8471 19 6 -1.1149 -7.3841 -1.3526 20 8 -1.4006 -7.4336 -0.1708 21 6 -1.4647 -8.5005 -2.2398 22 6 -1.2003 -8.5878 -3.6249 23 7 -1.6604 -9.7267 -4.0621 24 7 -2.2404 -10.4300 -2.9997 25 6 -2.1152 -9.6770 -1.8742 26 7 -2.5967 -10.1327 -0.6733 27 1 -2.5045 -9.5863 0.1230 28 6 -3.2041 -11.3509 -0.5945 29 6 -3.3322 -12.1118 -1.7053 30 6 -2.8437 -11.6346 -2.9391 31 8 -2.9540 -12.3141 -3.9441 32 1 -0.4850 0.8401 0.0004 33 1 -0.4353 -1.7105 -1.2575 34 1 -0.7534 -2.7740 0.1476 35 1 1.4402 -4.1280 1.0192 36 1 2.9177 -3.7768 0.0702 37 1 -0.2498 -6.2650 -2.7892 38 1 -0.7007 -7.8384 -4.2208 39 1 -3.5818 -11.7073 0.3524 40 1 -3.8128 -13.0773 -1.6490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961976969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:18 Heat of formation + Delta-G solvation = 108.128922 kcal Electronic energy + Delta-G solvation = -26627.247499 eV Core-core repulsion = 22639.709773 eV Total energy + Delta-G solvation = -3987.537725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.14915 -39.96146 -39.14433 -38.45818 -38.07114 -34.46322 -33.37366 -32.64188 -31.92394 -30.49257 -29.64447 -27.16836 -25.86577 -24.92244 -24.51448 -22.99091 -21.79805 -20.74128 -20.37986 -19.37306 -19.22782 -18.60366 -17.86711 -17.19038 -17.11474 -16.87219 -16.28906 -16.06485 -14.89460 -14.74435 -14.51797 -14.29609 -14.01663 -13.96106 -13.83100 -13.60126 -13.57227 -13.24265 -12.75601 -12.23134 -11.60821 -11.60381 -11.45663 -11.03511 -10.92755 -10.85231 -10.53403 -10.48849 -10.25241 -10.18330 -10.05670 -10.01393 -9.72089 -9.25180 -8.79502 -8.62551 -8.32531 -6.90326 -5.80754 -3.13980 0.31917 0.50243 1.41077 1.67906 2.02780 2.79696 2.99729 3.13965 3.37477 3.42966 3.44893 3.61645 3.92951 4.20001 4.26024 4.27803 4.45100 4.49741 4.78408 4.92920 5.02825 5.09727 5.30997 5.34032 5.52156 5.57207 5.74765 5.78884 5.85906 6.05870 6.15016 6.22580 6.40635 6.48904 6.57360 6.65369 6.72024 6.85455 7.27733 7.35062 7.47105 7.49627 7.67723 8.11222 8.12784 9.04639 9.71119 10.47089 11.34110 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.038016 B = 0.002102 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.349127 B =13318.712932 C =13619.830011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.186 3.814 11 C -0.177 4.177 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.104 0.896 15 C 0.159 3.841 16 C 0.097 3.903 17 H 0.133 0.867 18 N -0.687 5.687 19 C 0.603 3.397 20 O -0.558 6.558 21 C -0.306 4.306 22 C 0.128 3.872 23 N -0.261 5.261 24 N -0.357 5.357 25 C 0.373 3.627 26 N -0.586 5.586 27 H 0.449 0.551 28 C 0.190 3.810 29 C -0.305 4.305 30 C 0.563 3.437 31 O -0.488 6.488 32 H 0.254 0.746 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.026 0.974 36 H 0.052 0.948 37 H 0.399 0.601 38 H 0.208 0.792 39 H 0.193 0.807 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 -22.168 -1.745 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.062 3.938 11 C -0.199 4.199 12 H 0.121 0.879 13 C -0.204 4.204 14 H 0.122 0.878 15 C 0.032 3.968 16 C -0.009 4.009 17 H 0.151 0.849 18 N -0.334 5.334 19 C 0.391 3.609 20 O -0.438 6.438 21 C -0.324 4.324 22 C -0.062 4.062 23 N -0.078 5.078 24 N -0.157 5.157 25 C 0.148 3.852 26 N -0.204 5.204 27 H 0.292 0.708 28 C 0.062 3.938 29 C -0.335 4.335 30 C 0.361 3.639 31 O -0.359 6.359 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.234 0.766 38 H 0.224 0.776 39 H 0.210 0.790 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.956 -23.239 -2.548 24.392 hybrid contribution 0.706 1.588 0.372 1.777 sum -6.250 -21.651 -2.176 22.640 Atomic orbital electron populations 1.69877 1.05025 1.25350 1.56147 1.24857 0.95654 0.97891 1.02019 0.86097 0.78705 0.83376 0.77533 1.21590 1.21710 1.20554 1.19027 0.90768 0.82439 1.42980 0.90519 1.46065 1.11624 0.99725 1.74969 1.21738 0.86294 0.92242 0.93569 1.24624 1.02178 0.92362 1.00694 0.87904 1.24409 0.90415 1.02343 1.03203 0.87798 1.21053 0.97027 0.85760 0.92924 1.21894 0.98672 0.84762 0.95558 0.84905 1.45050 1.58593 1.17516 1.12226 1.16742 0.77003 0.80801 0.86322 1.90740 1.56019 1.80729 1.16325 1.19490 1.19948 0.97421 0.95530 1.24292 0.94760 0.94795 0.92400 1.77612 1.16503 1.06691 1.06947 1.48118 1.45012 1.16708 1.05912 1.18730 0.93709 0.91247 0.81467 1.41193 1.51853 1.18099 1.09297 0.70819 1.22482 0.87647 0.82367 1.01329 1.21697 1.16238 1.05785 0.89740 1.17183 0.77620 0.77787 0.91296 1.90927 1.54098 1.53759 1.37068 0.93584 0.88721 0.95234 0.95599 0.92978 0.76646 0.77565 0.79000 0.80204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.79 55.49 0.60 -25.69 16 2 C -0.01 -0.20 5.43 -17.43 -0.09 -0.30 16 3 Si 0.91 21.58 29.56 -169.99 -5.03 16.56 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.22 -6.09 10.37 -15.06 -0.16 -6.25 16 8 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 9 N -0.60 -14.85 3.45 -165.69 -0.57 -15.43 16 10 C 0.19 4.26 5.91 -0.29 0.00 4.26 16 11 C -0.18 -3.09 6.96 -89.22 -0.62 -3.71 16 12 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 13 C -0.18 -3.01 7.06 -89.22 -0.63 -3.64 16 14 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 15 C 0.16 3.21 7.05 -2.40 -0.02 3.19 16 16 C 0.10 1.47 5.96 -67.93 -0.41 1.07 16 17 H 0.13 2.29 7.40 -51.93 -0.38 1.91 16 18 N -0.69 -8.05 5.55 -55.07 -0.31 -8.35 16 19 C 0.60 7.40 7.79 -12.79 -0.10 7.30 16 20 O -0.56 -8.19 15.38 5.20 0.08 -8.11 16 21 C -0.31 -3.18 6.15 -104.86 -0.64 -3.83 16 22 C 0.13 1.19 11.47 -17.01 -0.20 0.99 16 23 N -0.26 -3.23 12.54 30.85 0.39 -2.84 16 24 N -0.36 -4.23 3.79 -13.82 -0.05 -4.28 16 25 C 0.37 3.71 7.78 -153.53 -1.20 2.51 16 26 N -0.59 -3.67 5.39 -11.73 -0.06 -3.73 16 27 H 0.45 2.44 7.78 -40.82 -0.32 2.13 16 28 C 0.19 0.63 11.25 -16.61 -0.19 0.45 16 29 C -0.31 -1.89 9.95 -39.59 -0.39 -2.28 16 30 C 0.56 6.54 7.70 -15.17 -0.12 6.42 16 31 O -0.49 -7.50 17.90 5.08 0.09 -7.41 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.09 2.42 6.57 -51.93 -0.34 2.08 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.40 3.48 7.76 -40.82 -0.32 3.17 16 38 H 0.21 1.05 7.48 -52.49 -0.39 0.65 16 39 H 0.19 -0.36 8.06 -52.49 -0.42 -0.79 16 40 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -37.25 346.49 -8.66 -45.91 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.26 Total: 1.97 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -4.76 Total: 6.19 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.01 Total: -60.32 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.17 Total: -15.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.25 -8.66 -45.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961976969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.036 kcal (2) G-P(sol) polarization free energy of solvation -37.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds