Wall clock time and date at job start Tue Mar 31 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48493 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46686 * 299.99824 * 3 2 1 6 6 H 1.48501 * 109.47128 * 59.99841 * 3 2 1 7 7 C 1.38806 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00434 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00149 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.88498 * 37.42148 * 10 9 7 12 12 C 1.55154 * 110.99933 * 273.54063 * 10 9 7 13 13 C 1.54318 * 102.94183 * 206.38239 * 12 10 9 14 14 N 1.47026 * 107.27083 * 22.19666 * 13 12 10 15 15 C 1.34777 * 125.64724 * 181.01921 * 14 13 12 16 16 O 1.21282 * 119.99630 * 180.02562 * 15 14 13 17 17 C 1.50696 * 120.00103 * 0.02562 * 15 14 13 18 18 C 1.53006 * 109.47105 * 179.97438 * 17 15 14 19 19 H 1.09003 * 110.07922 * 304.90465 * 18 17 15 20 20 N 1.46737 * 110.09476 * 66.45742 * 18 17 15 21 21 C 1.34415 * 108.75304 * 119.19910 * 20 18 17 22 22 O 1.21545 * 124.86137 * 179.97438 * 21 20 18 23 23 C 1.47547 * 110.28734 * 359.97438 * 21 20 18 24 24 C 1.39620 * 132.34464 * 179.97438 * 23 21 20 25 25 C 1.37943 * 119.82669 * 180.02562 * 24 23 21 26 26 C 1.38389 * 120.31998 * 0.02562 * 25 24 23 27 27 C 1.38467 * 120.18693 * 359.97438 * 26 25 24 28 28 C 1.37578 * 119.95972 * 359.97438 * 27 26 25 29 29 C 1.47420 * 108.70021 * 1.28768 * 14 13 12 30 30 H 0.97002 * 120.00446 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00067 * 359.97438 * 9 7 2 32 32 H 1.09000 * 110.71866 * 88.02221 * 12 10 9 33 33 H 1.08995 * 110.87524 * 324.82284 * 12 10 9 34 34 H 1.08997 * 109.89184 * 262.77571 * 13 12 10 35 35 H 1.09009 * 110.01056 * 141.68303 * 13 12 10 36 36 H 1.08999 * 109.47048 * 60.00562 * 17 15 14 37 37 H 1.08994 * 109.47643 * 300.00020 * 17 15 14 38 38 H 0.97008 * 125.62026 * 299.21722 * 20 18 17 39 39 H 1.07995 * 120.08846 * 0.02938 * 24 23 21 40 40 H 1.08002 * 119.84056 * 180.02562 * 25 24 23 41 41 H 1.07999 * 119.90452 * 179.97438 * 26 25 24 42 42 H 1.08006 * 120.01941 * 179.97438 * 27 26 25 43 43 H 1.08996 * 110.37159 * 94.48140 * 29 14 13 44 44 H 1.09003 * 110.36606 * 216.80364 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9524 -3.5886 0.6212 12 6 2.4147 -4.0942 -1.4436 13 6 2.5193 -5.6292 -1.3242 14 7 1.7464 -6.0285 -0.1389 15 6 1.6061 -7.2881 0.3196 16 8 0.9416 -7.5019 1.3113 17 6 2.2749 -8.4308 -0.4001 18 6 1.9588 -9.7427 0.3211 19 1 2.2458 -9.6715 1.3703 20 7 0.5277 -10.0472 0.2095 21 6 0.3841 -11.2191 -0.4330 22 8 -0.6811 -11.7483 -0.6830 23 6 1.7046 -11.7712 -0.7914 24 6 2.0874 -12.9398 -1.4527 25 6 3.4256 -13.2073 -1.6540 26 6 4.3902 -12.3233 -1.2032 27 6 4.0184 -11.1624 -0.5465 28 6 2.6864 -10.8855 -0.3416 29 6 1.1451 -4.8237 0.4611 30 1 -0.4851 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 3.3683 -3.6656 -1.7520 33 1 1.6245 -3.8144 -2.1402 34 1 3.5622 -5.9215 -1.2024 35 1 2.1036 -6.1017 -2.2143 36 1 3.3534 -8.2727 -0.4096 37 1 1.9060 -8.4809 -1.4244 38 1 -0.1955 -9.4938 0.5439 39 1 1.3378 -13.6324 -1.8058 40 1 3.7219 -14.1110 -2.1658 41 1 5.4360 -12.5397 -1.3640 42 1 4.7735 -10.4746 -0.1955 43 1 0.1296 -4.6821 0.0914 44 1 1.1465 -4.9004 1.5485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970312793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:20 Heat of formation + Delta-G solvation = -14.071025 kcal Electronic energy + Delta-G solvation = -27071.450853 eV Core-core repulsion = 23182.154484 eV Total energy + Delta-G solvation = -3889.296369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63501 -39.87426 -38.31231 -37.59290 -36.24963 -34.24265 -32.16267 -31.57750 -30.98655 -30.50211 -29.62832 -27.83213 -25.17621 -24.22305 -23.56514 -22.81791 -21.66027 -20.69798 -20.19440 -19.16424 -17.65222 -17.42918 -17.19309 -17.01161 -16.30114 -16.17610 -16.04368 -15.00783 -14.95068 -14.81152 -14.47426 -14.24675 -13.92507 -13.71455 -13.35351 -13.34628 -13.24112 -12.97520 -12.76326 -12.49504 -12.32857 -12.15728 -11.94885 -11.70884 -11.45302 -11.24286 -10.92004 -10.77022 -10.39088 -10.20045 -10.10849 -9.94336 -9.81532 -9.65966 -9.40197 -9.19035 -9.03431 -8.57482 -7.12075 -5.88599 -3.19768 0.38031 0.83455 2.49784 2.54535 2.92958 2.97434 3.36357 3.41985 3.44354 3.44510 3.68914 3.98482 4.34123 4.45068 4.48639 4.55713 4.56726 4.77944 4.88861 4.93288 4.97831 5.11423 5.19833 5.20939 5.26055 5.42561 5.47078 5.49289 5.52043 5.65535 5.78704 5.85522 5.86823 5.94158 6.05350 6.11528 6.27054 6.35003 6.41731 6.50649 6.54153 6.80237 6.81910 7.55132 7.59511 7.99511 8.08812 8.28490 9.40307 9.93652 10.28248 11.33532 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.027327 B = 0.002169 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.365641 B =12907.070434 C =13521.203753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.156 4.156 13 C 0.099 3.901 14 N -0.609 5.609 15 C 0.526 3.474 16 O -0.548 6.548 17 C -0.142 4.142 18 C 0.188 3.812 19 H 0.113 0.887 20 N -0.706 5.706 21 C 0.558 3.442 22 O -0.530 6.530 23 C -0.154 4.154 24 C -0.048 4.048 25 C -0.126 4.126 26 C -0.089 4.089 27 C -0.100 4.100 28 C -0.079 4.079 29 C 0.098 3.902 30 H 0.257 0.743 31 H 0.386 0.614 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.432 0.568 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.070 0.930 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.339 -24.915 -4.021 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.197 4.197 13 C -0.024 4.024 14 N -0.343 5.343 15 C 0.315 3.685 16 O -0.427 6.427 17 C -0.183 4.183 18 C 0.081 3.919 19 H 0.130 0.870 20 N -0.363 5.363 21 C 0.345 3.655 22 O -0.407 6.407 23 C -0.157 4.157 24 C -0.067 4.067 25 C -0.144 4.144 26 C -0.107 4.107 27 C -0.118 4.118 28 C -0.080 4.080 29 C -0.025 4.025 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.276 0.724 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.088 0.912 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.559 -25.228 -3.600 27.585 hybrid contribution -0.062 1.305 -0.046 1.307 sum 10.498 -23.923 -3.646 26.378 Atomic orbital electron populations 1.69667 1.05174 1.25865 1.56938 1.24786 0.95543 0.97881 1.02442 0.86096 0.78765 0.83884 0.77265 1.20470 1.21770 1.21749 1.19234 0.91063 0.83723 1.43606 0.90907 1.42269 1.05848 0.99337 1.88113 1.21335 0.94147 0.85646 0.92839 0.91841 1.23425 1.02988 0.91114 1.02157 1.22154 0.95193 0.97822 0.87237 1.48462 1.50452 1.06262 1.29081 1.20052 0.81321 0.82640 0.84513 1.90701 1.41710 1.83750 1.26517 1.22007 1.03196 0.91834 1.01253 1.19769 0.80675 0.90786 1.00631 0.86955 1.45978 1.08354 1.23114 1.58860 1.18316 0.88393 0.81254 0.77572 1.90811 1.30984 1.63456 1.55494 1.20489 0.94603 0.97329 1.03294 1.20898 0.96377 0.94665 0.94723 1.21170 0.92314 1.00214 1.00742 1.21351 1.00023 0.93315 0.95997 1.20356 0.93764 0.97929 0.99736 1.20413 0.94083 0.95686 0.97806 1.22610 0.97552 0.83441 0.98867 0.93337 0.77919 0.90622 0.90487 0.91694 0.91935 0.87131 0.88005 0.72424 0.84971 0.84946 0.84848 0.84880 0.91204 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.13 13.06 55.49 0.72 -26.40 16 2 C -0.01 -0.27 5.50 -17.44 -0.10 -0.37 16 3 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -16.78 5.28 -51.24 -0.27 -17.05 16 10 C 0.17 3.11 3.70 -65.66 -0.24 2.87 16 11 H 0.06 1.17 8.13 -51.93 -0.42 0.74 16 12 C -0.16 -2.32 6.64 -24.90 -0.17 -2.48 16 13 C 0.10 1.13 6.48 -3.06 -0.02 1.11 16 14 N -0.61 -8.20 3.32 -170.38 -0.57 -8.77 16 15 C 0.53 6.72 7.73 -10.99 -0.08 6.64 16 16 O -0.55 -8.65 15.09 5.56 0.08 -8.57 16 17 C -0.14 -1.22 4.60 -27.88 -0.13 -1.35 16 18 C 0.19 1.73 3.07 -68.89 -0.21 1.51 16 19 H 0.11 1.02 7.98 -51.93 -0.41 0.60 16 20 N -0.71 -8.17 5.70 -55.86 -0.32 -8.49 16 21 C 0.56 7.29 8.34 -12.63 -0.11 7.18 16 22 O -0.53 -8.81 18.04 5.33 0.10 -8.71 16 23 C -0.15 -1.58 6.26 -105.05 -0.66 -2.24 16 24 C -0.05 -0.39 10.10 -39.17 -0.40 -0.79 16 25 C -0.13 -0.74 10.02 -39.63 -0.40 -1.14 16 26 C -0.09 -0.46 10.05 -39.44 -0.40 -0.85 16 27 C -0.10 -0.59 10.03 -39.74 -0.40 -0.99 16 28 C -0.08 -0.65 5.67 -104.27 -0.59 -1.24 16 29 C 0.10 1.61 6.53 -2.41 -0.02 1.60 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 31 H 0.39 9.75 7.71 -40.82 -0.31 9.43 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.43 5.33 8.00 -40.82 -0.33 5.00 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 43 H 0.07 1.21 8.01 -51.93 -0.42 0.80 16 44 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -33.28 371.18 -9.82 -43.10 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.08 Total: 9.91 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -4.06 Total: 2.89 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.43 Total: -60.71 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.18 Total: -17.28 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.28 -9.82 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970312793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.031 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds