Wall clock time and date at job start Tue Mar 31 2020 06:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99628 * 2 1 4 4 H 1.48499 * 109.46982 * 270.00036 * 3 2 1 5 5 H 1.48499 * 109.47373 * 30.00133 * 3 2 1 6 6 H 1.48498 * 109.47320 * 150.00326 * 3 2 1 7 7 C 1.38813 * 120.00518 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99363 * 359.97438 * 7 2 1 9 9 N 1.36929 * 120.00016 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99896 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.63866 * 31.85052 * 10 9 7 12 12 C 1.55160 * 110.86875 * 268.61145 * 10 9 7 13 13 C 1.55134 * 101.48200 * 205.89679 * 12 10 9 14 14 N 1.47421 * 104.72228 * 37.29573 * 13 12 10 15 15 C 1.34782 * 125.64885 * 155.81897 * 14 13 12 16 16 O 1.21280 * 120.00093 * 179.69226 * 15 14 13 17 17 C 1.50694 * 119.99660 * 359.68796 * 15 14 13 18 18 C 1.53003 * 109.47181 * 180.02562 * 17 15 14 19 19 H 1.09002 * 110.07498 * 53.44144 * 18 17 15 20 20 N 1.46735 * 110.09465 * 291.82735 * 18 17 15 21 21 C 1.34428 * 108.74774 * 240.79673 * 20 18 17 22 22 O 1.21549 * 124.85293 * 180.02562 * 21 20 18 23 23 C 1.47543 * 110.28717 * 0.02562 * 21 20 18 24 24 C 1.39624 * 132.34471 * 179.97438 * 23 21 20 25 25 C 1.37936 * 119.82992 * 179.72646 * 24 23 21 26 26 C 1.38384 * 120.31875 * 0.55335 * 25 24 23 27 27 C 1.38473 * 120.18488 * 359.44537 * 26 25 24 28 28 C 1.37573 * 119.96005 * 0.27448 * 27 26 25 29 29 C 1.47023 * 108.70392 * 335.55361 * 14 13 12 30 30 H 0.96998 * 120.00595 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00235 * 359.97438 * 9 7 2 32 32 H 1.08994 * 111.00513 * 324.13314 * 12 10 9 33 33 H 1.09001 * 111.00574 * 87.95119 * 12 10 9 34 34 H 1.08999 * 110.49385 * 278.45057 * 13 12 10 35 35 H 1.09003 * 110.34061 * 156.05734 * 13 12 10 36 36 H 1.08997 * 109.47391 * 60.00269 * 17 15 14 37 37 H 1.09003 * 109.47684 * 300.00251 * 17 15 14 38 38 H 0.97001 * 125.63057 * 60.77770 * 20 18 17 39 39 H 1.07999 * 120.08458 * 0.02562 * 24 23 21 40 40 H 1.08000 * 119.84425 * 180.27983 * 25 24 23 41 41 H 1.08002 * 119.90971 * 179.72612 * 26 25 24 42 42 H 1.08006 * 120.02162 * 180.29845 * 27 26 25 43 43 H 1.08995 * 109.88498 * 120.70810 * 29 14 13 44 44 H 1.09004 * 109.88150 * 241.87401 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4707 -0.0022 11 1 3.5539 -3.2363 -0.5408 12 6 4.4197 -2.9328 1.4468 13 6 5.6843 -3.8050 1.2310 14 7 6.4476 -3.1051 0.1818 15 6 7.7768 -3.2020 -0.0195 16 8 8.3003 -2.5821 -0.9209 17 6 8.6123 -4.0804 0.8756 18 6 10.0761 -4.0114 0.4356 19 1 10.4046 -2.9731 0.3899 20 7 10.2392 -4.6512 -0.8749 21 6 11.0907 -5.6837 -0.7486 22 8 11.4336 -6.4162 -1.6559 23 6 11.5492 -5.8007 0.6489 24 6 12.4195 -6.6903 1.2818 25 6 12.6750 -6.5575 2.6308 26 6 12.0642 -5.5539 3.3620 27 6 11.1999 -4.6677 2.7413 28 6 10.9427 -4.7879 1.3952 29 6 5.5179 -2.2890 -0.6126 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 4.6342 -2.0805 2.0914 33 1 3.6000 -3.5279 1.8493 34 1 5.4061 -4.8040 0.8953 35 1 6.2671 -3.8614 2.1504 36 1 8.2599 -5.1095 0.8064 37 1 8.5265 -3.7355 1.9061 38 1 9.8042 -4.3749 -1.6967 39 1 12.8951 -7.4775 0.7157 40 1 13.3516 -7.2428 3.1197 41 1 12.2657 -5.4586 4.4188 42 1 10.7284 -3.8824 3.3136 43 1 5.8106 -1.2402 -0.5637 44 1 5.5189 -2.6283 -1.6484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970312840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:25 Heat of formation + Delta-G solvation = -9.288744 kcal Electronic energy + Delta-G solvation = -27165.210612 eV Core-core repulsion = 23276.121618 eV Total energy + Delta-G solvation = -3889.088994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67588 -39.95973 -38.35083 -37.71134 -36.30701 -34.38738 -32.20012 -31.67165 -31.02703 -30.65247 -29.86778 -28.14394 -25.26703 -24.26091 -23.40116 -22.74592 -21.70746 -20.75903 -20.28822 -19.27241 -17.88065 -17.69147 -17.22144 -17.06661 -16.51425 -16.31830 -15.78157 -15.31624 -14.90978 -14.80860 -14.56586 -14.19094 -14.08306 -13.91345 -13.38492 -13.33276 -13.25440 -12.95293 -12.79702 -12.57633 -12.37637 -12.13388 -12.04856 -11.96157 -11.55796 -11.48776 -10.97521 -10.82377 -10.59916 -10.24331 -10.18830 -10.00052 -9.70790 -9.70409 -9.43341 -9.22813 -9.07534 -8.65716 -7.43598 -5.88821 -3.26989 0.34731 0.80523 2.45699 2.48278 2.85865 2.91680 3.30130 3.33582 3.39059 3.40902 3.65018 3.94070 4.29723 4.39592 4.48640 4.50749 4.53261 4.74041 4.80335 4.85714 4.93341 5.02742 5.09137 5.13792 5.18078 5.34707 5.38243 5.43977 5.46388 5.55680 5.73076 5.75347 5.77468 5.82696 5.91507 6.01038 6.14602 6.29438 6.32348 6.41954 6.49207 6.66860 6.74710 7.46209 7.84199 7.94573 8.02145 8.29285 9.05539 9.78007 9.95634 11.28685 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.002306 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.358879 B =12138.543635 C =12489.188918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.093 0.907 9 N -0.739 5.739 10 C 0.176 3.824 11 H 0.076 0.924 12 C -0.154 4.154 13 C 0.096 3.904 14 N -0.610 5.610 15 C 0.526 3.474 16 O -0.547 6.547 17 C -0.142 4.142 18 C 0.188 3.812 19 H 0.113 0.887 20 N -0.707 5.707 21 C 0.558 3.442 22 O -0.530 6.530 23 C -0.154 4.154 24 C -0.047 4.047 25 C -0.126 4.126 26 C -0.088 4.088 27 C -0.100 4.100 28 C -0.079 4.079 29 C 0.096 3.904 30 H 0.261 0.739 31 H 0.363 0.637 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.431 0.569 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.068 0.932 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.357 -12.405 9.562 28.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.110 0.890 9 N -0.380 5.380 10 C 0.065 3.935 11 H 0.094 0.906 12 C -0.196 4.196 13 C -0.027 4.027 14 N -0.343 5.343 15 C 0.314 3.686 16 O -0.426 6.426 17 C -0.183 4.183 18 C 0.081 3.919 19 H 0.130 0.870 20 N -0.364 5.364 21 C 0.345 3.655 22 O -0.407 6.407 23 C -0.157 4.157 24 C -0.066 4.066 25 C -0.144 4.144 26 C -0.106 4.106 27 C -0.118 4.118 28 C -0.080 4.080 29 C -0.027 4.027 30 H 0.071 0.929 31 H 0.197 0.803 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.275 0.725 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.087 0.913 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 24.621 -12.516 8.607 28.929 hybrid contribution 0.196 1.407 -0.154 1.429 sum 24.817 -11.108 8.452 28.473 Atomic orbital electron populations 1.69691 1.05115 1.26070 1.56665 1.24679 0.95239 0.97298 1.01503 0.86576 0.79179 0.84917 0.77969 1.20889 1.21587 1.20313 1.19028 0.80144 0.94869 1.44084 0.88958 1.42706 1.04204 1.01457 1.89672 1.21160 0.89216 0.90237 0.92880 0.90601 1.23578 0.95364 0.99435 1.01181 1.22515 0.93650 0.96363 0.90213 1.48483 1.06173 1.46342 1.33326 1.20086 0.81082 0.82284 0.85144 1.90706 1.71321 1.47111 1.33457 1.22010 0.93366 1.01910 1.01006 1.19767 0.92772 0.97901 0.81439 0.86951 1.45958 1.47284 1.31533 1.11587 1.18316 0.78882 0.80367 0.87907 1.90813 1.59097 1.45380 1.45419 1.20476 1.01472 0.98805 0.94993 1.20899 0.94552 0.96911 0.94275 1.21172 1.00561 0.99027 0.93653 1.21359 0.95070 0.93934 1.00266 1.20362 0.99042 1.00132 0.92258 1.20404 0.97253 0.96048 0.94300 1.22383 0.89686 0.95462 0.95154 0.92859 0.80317 0.90675 0.89954 0.91184 0.91043 0.87904 0.87099 0.72533 0.84953 0.84916 0.84819 0.84881 0.91345 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.97 55.49 0.78 -27.33 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.31 27.73 -169.99 -4.71 16.60 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 7 C -0.25 -6.67 10.44 -15.06 -0.16 -6.83 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 N -0.74 -16.19 5.03 -51.65 -0.26 -16.45 16 10 C 0.18 3.01 3.60 -66.09 -0.24 2.77 16 11 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 12 C -0.15 -2.15 6.79 -24.46 -0.17 -2.32 16 13 C 0.10 1.00 6.70 -2.41 -0.02 0.99 16 14 N -0.61 -7.76 3.32 -170.38 -0.57 -8.33 16 15 C 0.53 6.43 7.74 -10.99 -0.09 6.34 16 16 O -0.55 -8.38 15.27 5.56 0.08 -8.30 16 17 C -0.14 -1.16 4.40 -27.88 -0.12 -1.28 16 18 C 0.19 1.66 3.05 -68.89 -0.21 1.45 16 19 H 0.11 1.01 7.92 -51.93 -0.41 0.60 16 20 N -0.71 -7.81 5.73 -55.86 -0.32 -8.13 16 21 C 0.56 7.04 8.34 -12.62 -0.11 6.94 16 22 O -0.53 -8.55 18.04 5.32 0.10 -8.45 16 23 C -0.15 -1.53 6.26 -105.05 -0.66 -2.19 16 24 C -0.05 -0.38 10.10 -39.17 -0.40 -0.78 16 25 C -0.13 -0.71 10.02 -39.64 -0.40 -1.11 16 26 C -0.09 -0.44 10.05 -39.44 -0.40 -0.84 16 27 C -0.10 -0.58 10.03 -39.74 -0.40 -0.98 16 28 C -0.08 -0.63 5.67 -104.27 -0.59 -1.22 16 29 C 0.10 1.49 6.62 -3.07 -0.02 1.47 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.36 7.97 5.43 -40.82 -0.22 7.74 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.56 7.48 -51.93 -0.39 0.18 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.11 0.63 7.85 -51.93 -0.41 0.23 16 38 H 0.43 5.02 8.15 -40.82 -0.33 4.69 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 42 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 43 H 0.07 1.14 7.72 -51.93 -0.40 0.74 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -34.26 367.12 -9.41 -43.66 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.98 Total: 8.61 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -4.05 Total: 2.59 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.37 Total: -60.24 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.18 Total: -16.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.26 -9.41 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970312840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.374 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds