Wall clock time and date at job start Tue Mar 31 2020 06:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99692 * 2 1 4 4 H 1.48502 * 109.46659 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47124 * 299.99025 * 3 2 1 6 6 H 1.48493 * 109.47747 * 59.99665 * 3 2 1 7 7 C 1.38813 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99900 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99697 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.88526 * 37.42930 * 10 9 7 12 12 C 1.55159 * 111.00048 * 273.54665 * 10 9 7 13 13 C 1.54324 * 102.94134 * 206.38642 * 12 10 9 14 14 N 1.47020 * 107.39983 * 22.11770 * 13 12 10 15 15 C 1.34780 * 125.64983 * 181.10309 * 14 13 12 16 16 O 1.21276 * 120.00190 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99770 * 0.02562 * 15 14 13 18 18 N 1.46492 * 109.47281 * 179.97438 * 17 15 14 19 19 C 1.46734 * 125.62599 * 269.72339 * 18 17 15 20 20 C 1.50833 * 106.25141 * 179.88657 * 19 18 17 21 21 C 1.37575 * 133.23826 * 180.02562 * 20 19 18 22 22 C 1.38477 * 119.95781 * 180.35951 * 21 20 19 23 23 C 1.38388 * 120.18438 * 359.95964 * 22 21 20 24 24 C 1.37939 * 120.32112 * 0.02562 * 23 22 21 25 25 C 1.39623 * 119.82706 * 359.97438 * 24 23 22 26 26 C 1.34420 * 125.62483 * 90.02569 * 18 17 15 27 27 O 1.21562 * 124.85282 * 359.94463 * 26 18 17 28 28 C 1.47743 * 108.53125 * 1.18235 * 14 13 12 29 29 H 0.97000 * 120.00170 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00367 * 0.02562 * 9 7 2 31 31 H 1.09004 * 110.72010 * 88.02432 * 12 10 9 32 32 H 1.08999 * 110.72303 * 324.75041 * 12 10 9 33 33 H 1.09002 * 109.88322 * 141.61300 * 13 12 10 34 34 H 1.09000 * 109.88025 * 262.62465 * 13 12 10 35 35 H 1.08992 * 109.47408 * 300.00360 * 17 15 14 36 36 H 1.09005 * 109.47188 * 60.00318 * 17 15 14 37 37 H 1.09006 * 110.09549 * 299.21008 * 19 18 17 38 38 H 1.08991 * 110.10089 * 60.81975 * 19 18 17 39 39 H 1.07997 * 120.02400 * 0.36739 * 21 20 19 40 40 H 1.07993 * 119.91010 * 179.97438 * 22 21 20 41 41 H 1.07994 * 119.83996 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.08841 * 180.02562 * 24 23 22 43 43 H 1.09003 * 110.29227 * 216.94505 * 28 14 13 44 44 H 1.08996 * 110.53057 * 94.67717 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9523 -3.5887 0.6213 12 6 2.4149 -4.0942 -1.4436 13 6 2.5194 -5.6293 -1.3243 14 7 1.7487 -6.0315 -0.1386 15 6 1.6118 -7.2919 0.3188 16 8 0.9488 -7.5083 1.3110 17 6 2.2825 -8.4324 -0.4028 18 7 1.9834 -9.6898 0.2867 19 6 2.7826 -10.2850 1.3638 20 6 2.0821 -11.5631 1.7524 21 6 2.3484 -12.5373 2.6866 22 6 1.5031 -13.6272 2.8092 23 6 0.3897 -13.7394 1.9950 24 6 0.1134 -12.7681 1.0554 25 6 0.9611 -11.6662 0.9258 26 6 0.9347 -10.4916 0.0331 27 8 0.0851 -10.2785 -0.8097 28 6 1.1495 -4.8231 0.4642 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 3.3685 -3.6656 -1.7520 32 1 1.6226 -3.8144 -2.1379 33 1 2.1021 -6.0996 -2.2147 34 1 3.5626 -5.9216 -1.2051 35 1 1.9125 -8.4822 -1.4268 36 1 3.3606 -8.2718 -0.4134 37 1 3.7898 -10.5011 1.0073 38 1 2.8238 -9.6085 2.2173 39 1 3.2161 -12.4520 3.3239 40 1 1.7131 -14.3917 3.5425 41 1 -0.2655 -14.5920 2.0951 42 1 -0.7567 -12.8592 0.4222 43 1 1.1554 -4.9003 1.5514 44 1 0.1322 -4.6787 0.1004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970518621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:59 Heat of formation + Delta-G solvation = 0.891221 kcal Electronic energy + Delta-G solvation = -26987.213699 eV Core-core repulsion = 23098.566141 eV Total energy + Delta-G solvation = -3888.647558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.45460 -39.77693 -38.35472 -37.31798 -36.17988 -34.18926 -32.48278 -31.51411 -31.43705 -29.61486 -28.78546 -27.26492 -26.90963 -24.06478 -23.22677 -22.65402 -22.04222 -20.47241 -20.10297 -19.13743 -17.43743 -17.36057 -17.29913 -16.97755 -16.28006 -15.97874 -15.85636 -15.01749 -14.91799 -14.54586 -14.42904 -14.13808 -13.77046 -13.60405 -13.56038 -13.48871 -13.26280 -12.83902 -12.76821 -12.52168 -12.33112 -12.20961 -11.91390 -11.65968 -11.44653 -11.20464 -10.89217 -10.73864 -10.34188 -10.18546 -10.11195 -10.06101 -9.79969 -9.43121 -9.26976 -9.00171 -8.90508 -8.48794 -7.08386 -5.85279 -3.16325 0.44998 0.90868 2.28377 2.58055 2.63659 3.15417 3.38564 3.44051 3.46608 3.51129 3.74115 4.08971 4.46506 4.49084 4.51535 4.59507 4.74966 4.86408 4.92778 4.97955 5.03780 5.08232 5.10176 5.24122 5.29262 5.34282 5.50519 5.54399 5.55664 5.70123 5.75809 5.89786 5.92162 5.99800 6.10019 6.16579 6.20248 6.33536 6.42341 6.48868 6.55889 6.69237 6.87089 7.62098 7.62618 7.89589 8.20063 8.31883 9.43505 9.97388 10.32102 11.36895 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.032947 B = 0.002039 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.652739 B =13726.486877 C =13782.289610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.155 4.155 13 C 0.097 3.903 14 N -0.612 5.612 15 C 0.506 3.494 16 O -0.535 6.535 17 C 0.124 3.876 18 N -0.599 5.599 19 C 0.143 3.857 20 C -0.078 4.078 21 C -0.104 4.104 22 C -0.089 4.089 23 C -0.129 4.129 24 C -0.046 4.046 25 C -0.152 4.152 26 C 0.565 3.435 27 O -0.521 6.521 28 C 0.100 3.900 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.076 0.924 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.925 -28.229 1.948 29.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.196 4.196 13 C -0.026 4.026 14 N -0.347 5.347 15 C 0.293 3.707 16 O -0.411 6.411 17 C -0.001 4.001 18 N -0.331 5.331 19 C 0.020 3.980 20 C -0.079 4.079 21 C -0.122 4.122 22 C -0.107 4.107 23 C -0.147 4.147 24 C -0.065 4.065 25 C -0.155 4.155 26 C 0.354 3.646 27 O -0.397 6.397 28 C -0.023 4.023 29 H 0.066 0.934 30 H 0.221 0.779 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.094 0.906 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.246 -28.031 2.011 29.288 hybrid contribution 0.128 1.076 -0.065 1.086 sum 8.374 -26.955 1.946 28.293 Atomic orbital electron populations 1.69675 1.05165 1.25823 1.56991 1.24793 0.95547 0.97873 1.02519 0.86090 0.78748 0.83899 0.77236 1.20480 1.21784 1.21789 1.19239 0.91065 0.83727 1.43507 0.90894 1.42272 1.05865 0.99325 1.88119 1.21285 0.94150 0.85635 0.92894 0.91886 1.23417 1.02963 0.91078 1.02120 1.22171 0.95135 0.97973 0.87349 1.48537 1.50944 1.06078 1.29118 1.20680 0.81929 0.82866 0.85263 1.90720 1.40741 1.83404 1.26266 1.21149 1.01633 0.80518 0.96821 1.47329 1.27113 1.21091 1.37586 1.20506 0.94543 0.91830 0.91114 1.20454 0.95929 0.95578 0.95964 1.20305 1.00655 0.93291 0.97944 1.21330 0.93954 0.97213 0.98250 1.21140 0.98110 0.99282 0.96146 1.20892 0.97754 0.91215 0.96639 1.20372 0.98274 0.96968 0.99885 1.18240 0.80759 0.82904 0.82728 1.90791 1.37870 1.76091 1.34991 1.22598 0.97661 0.83290 0.98722 0.93360 0.77907 0.90584 0.90428 0.91802 0.91712 0.86591 0.86812 0.88398 0.88219 0.85019 0.84956 0.84968 0.84982 0.90590 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.51 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.25 5.28 -51.35 -0.27 -17.52 16 10 C 0.17 3.24 3.68 -65.78 -0.24 3.00 16 11 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 12 C -0.15 -2.40 6.65 -24.90 -0.17 -2.57 16 13 C 0.10 1.18 6.48 -3.06 -0.02 1.16 16 14 N -0.61 -9.19 3.34 -170.26 -0.57 -9.76 16 15 C 0.51 7.76 7.92 -10.98 -0.09 7.67 16 16 O -0.53 -10.40 16.70 5.56 0.09 -10.31 16 17 C 0.12 1.36 5.73 -5.20 -0.03 1.33 16 18 N -0.60 -7.18 2.45 -177.51 -0.44 -7.61 16 19 C 0.14 1.23 7.38 -5.00 -0.04 1.19 16 20 C -0.08 -0.72 6.38 -104.27 -0.66 -1.38 16 21 C -0.10 -0.70 10.03 -39.74 -0.40 -1.10 16 22 C -0.09 -0.54 10.05 -39.44 -0.40 -0.94 16 23 C -0.13 -0.90 10.02 -39.64 -0.40 -1.30 16 24 C -0.05 -0.45 10.10 -39.17 -0.40 -0.84 16 25 C -0.15 -1.78 6.26 -105.05 -0.66 -2.44 16 26 C 0.56 8.23 7.97 -12.62 -0.10 8.13 16 27 O -0.52 -9.45 17.71 5.31 0.09 -9.36 16 28 C 0.10 1.78 6.55 -2.35 -0.02 1.76 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.39 10.03 7.71 -40.82 -0.31 9.72 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.12 1.22 8.01 -51.93 -0.42 0.80 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 40 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 44 H 0.07 1.32 8.00 -51.93 -0.42 0.90 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -36.18 375.36 -9.77 -45.95 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.18 Total: 6.38 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -3.85 Total: 6.60 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.55 Total: -61.72 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.19 Total: -19.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.18 -9.77 -45.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970518621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.838 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds