Wall clock time and date at job start Tue Mar 31 2020 06:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99692 * 2 1 4 4 H 1.48502 * 109.46659 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47124 * 299.99025 * 3 2 1 6 6 H 1.48493 * 109.47747 * 59.99665 * 3 2 1 7 7 C 1.38813 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99900 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99697 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.88526 * 37.42930 * 10 9 7 12 12 C 1.55159 * 111.00048 * 273.54665 * 10 9 7 13 13 C 1.54324 * 102.94134 * 206.38642 * 12 10 9 14 14 N 1.47020 * 107.39983 * 22.11770 * 13 12 10 15 15 C 1.34780 * 125.64983 * 181.10309 * 14 13 12 16 16 O 1.21276 * 120.00190 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99770 * 0.02562 * 15 14 13 18 18 N 1.46492 * 109.47281 * 179.97438 * 17 15 14 19 19 C 1.46734 * 125.62599 * 269.72339 * 18 17 15 20 20 C 1.50833 * 106.25141 * 179.88657 * 19 18 17 21 21 C 1.37575 * 133.23826 * 180.02562 * 20 19 18 22 22 C 1.38477 * 119.95781 * 180.35951 * 21 20 19 23 23 C 1.38388 * 120.18438 * 359.95964 * 22 21 20 24 24 C 1.37939 * 120.32112 * 0.02562 * 23 22 21 25 25 C 1.39623 * 119.82706 * 359.97438 * 24 23 22 26 26 C 1.34420 * 125.62483 * 90.02569 * 18 17 15 27 27 O 1.21562 * 124.85282 * 359.94463 * 26 18 17 28 28 C 1.47743 * 108.53125 * 1.18235 * 14 13 12 29 29 H 0.97000 * 120.00170 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00367 * 0.02562 * 9 7 2 31 31 H 1.09004 * 110.72010 * 88.02432 * 12 10 9 32 32 H 1.08999 * 110.72303 * 324.75041 * 12 10 9 33 33 H 1.09002 * 109.88322 * 141.61300 * 13 12 10 34 34 H 1.09000 * 109.88025 * 262.62465 * 13 12 10 35 35 H 1.08992 * 109.47408 * 300.00360 * 17 15 14 36 36 H 1.09005 * 109.47188 * 60.00318 * 17 15 14 37 37 H 1.09006 * 110.09549 * 299.21008 * 19 18 17 38 38 H 1.08991 * 110.10089 * 60.81975 * 19 18 17 39 39 H 1.07997 * 120.02400 * 0.36739 * 21 20 19 40 40 H 1.07993 * 119.91010 * 179.97438 * 22 21 20 41 41 H 1.07994 * 119.83996 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.08841 * 180.02562 * 24 23 22 43 43 H 1.09003 * 110.29227 * 216.94505 * 28 14 13 44 44 H 1.08996 * 110.53057 * 94.67717 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9523 -3.5887 0.6213 12 6 2.4149 -4.0942 -1.4436 13 6 2.5194 -5.6293 -1.3243 14 7 1.7487 -6.0315 -0.1386 15 6 1.6118 -7.2919 0.3188 16 8 0.9488 -7.5083 1.3110 17 6 2.2825 -8.4324 -0.4028 18 7 1.9834 -9.6898 0.2867 19 6 2.7826 -10.2850 1.3638 20 6 2.0821 -11.5631 1.7524 21 6 2.3484 -12.5373 2.6866 22 6 1.5031 -13.6272 2.8092 23 6 0.3897 -13.7394 1.9950 24 6 0.1134 -12.7681 1.0554 25 6 0.9611 -11.6662 0.9258 26 6 0.9347 -10.4916 0.0331 27 8 0.0851 -10.2785 -0.8097 28 6 1.1495 -4.8231 0.4642 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 3.3685 -3.6656 -1.7520 32 1 1.6226 -3.8144 -2.1379 33 1 2.1021 -6.0996 -2.2147 34 1 3.5626 -5.9216 -1.2051 35 1 1.9125 -8.4822 -1.4268 36 1 3.3606 -8.2718 -0.4134 37 1 3.7898 -10.5011 1.0073 38 1 2.8238 -9.6085 2.2173 39 1 3.2161 -12.4520 3.3239 40 1 1.7131 -14.3917 3.5425 41 1 -0.2655 -14.5920 2.0951 42 1 -0.7567 -12.8592 0.4222 43 1 1.1554 -4.9003 1.5514 44 1 0.1322 -4.6787 0.1004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970518621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:58 Heat of formation + Delta-G solvation = -23.940437 kcal Electronic energy + Delta-G solvation = -26988.290480 eV Core-core repulsion = 23098.566141 eV Total energy + Delta-G solvation = -3889.724339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28539 -40.97345 -39.21275 -38.66331 -37.12686 -35.95914 -33.60362 -32.93837 -32.06981 -31.07904 -29.94924 -28.42751 -27.71477 -25.70916 -24.49018 -23.65151 -22.66786 -21.67484 -21.30254 -20.25504 -19.29782 -18.51861 -18.10829 -17.92880 -17.34301 -17.04951 -16.78044 -16.36950 -16.07822 -15.64434 -15.44981 -15.30133 -15.12366 -14.74815 -14.58893 -14.44772 -14.39803 -14.06208 -13.83440 -13.56246 -13.32394 -13.15501 -13.08669 -13.03311 -12.77300 -12.70018 -12.33841 -12.09105 -12.04289 -11.76844 -11.61769 -11.37710 -11.11304 -10.96884 -10.22328 -9.92917 -9.74786 -9.68326 -9.06800 -7.96095 -5.26877 -0.24611 0.33550 1.35935 1.46426 1.49194 1.49713 1.59709 1.75538 2.04989 2.56442 2.80568 3.07529 3.32624 3.37430 3.44721 3.69120 3.88338 3.90880 3.99845 4.06663 4.17235 4.19581 4.24952 4.33203 4.34973 4.42971 4.47545 4.50020 4.51477 4.69007 4.77165 4.82341 4.95703 4.98998 5.05977 5.15220 5.24817 5.36731 5.42564 5.43413 5.48542 5.53847 5.78400 5.91177 6.24290 6.43954 6.89006 7.01525 7.30605 8.02113 8.25719 9.27641 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.032947 B = 0.002039 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.652739 B =13726.486877 C =13782.289610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.295 1.295 6 H -0.298 1.298 7 C -0.236 4.236 8 H 0.085 0.915 9 N -0.732 5.732 10 C 0.167 3.833 11 H 0.068 0.932 12 C -0.145 4.145 13 C 0.102 3.898 14 N -0.610 5.610 15 C 0.501 3.499 16 O -0.586 6.586 17 C 0.128 3.872 18 N -0.599 5.599 19 C 0.139 3.861 20 C -0.081 4.081 21 C -0.101 4.101 22 C -0.078 4.078 23 C -0.129 4.129 24 C -0.067 4.067 25 C -0.194 4.194 26 C 0.547 3.453 27 O -0.579 6.579 28 C 0.108 3.892 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.168 0.832 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.158 0.842 42 H 0.122 0.878 43 H 0.059 0.941 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.876 -30.549 2.484 33.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.222 1.222 6 H -0.225 1.225 7 C -0.368 4.368 8 H 0.103 0.897 9 N -0.371 5.371 10 C 0.057 3.943 11 H 0.086 0.914 12 C -0.186 4.186 13 C -0.020 4.020 14 N -0.344 5.344 15 C 0.290 3.710 16 O -0.466 6.466 17 C 0.003 3.997 18 N -0.330 5.330 19 C 0.018 3.982 20 C -0.082 4.082 21 C -0.119 4.119 22 C -0.096 4.096 23 C -0.146 4.146 24 C -0.086 4.086 25 C -0.198 4.198 26 C 0.338 3.662 27 O -0.461 6.461 28 C -0.016 4.016 29 H 0.059 0.941 30 H 0.204 0.796 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.186 0.814 37 H 0.158 0.842 38 H 0.118 0.882 39 H 0.183 0.817 40 H 0.187 0.813 41 H 0.176 0.824 42 H 0.140 0.860 43 H 0.078 0.922 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.302 -30.396 2.539 32.889 hybrid contribution -1.087 1.658 -0.145 1.988 sum 11.214 -28.738 2.395 30.942 Atomic orbital electron populations 1.69844 1.06848 1.26048 1.59525 1.25639 0.96353 1.01385 1.03724 0.85033 0.78491 0.79592 0.76379 1.18376 1.22247 1.22532 1.19665 0.91696 0.84549 1.40862 0.89669 1.42466 1.05429 1.00757 1.88493 1.21454 0.93705 0.83790 0.95320 0.91437 1.23215 1.02913 0.93803 0.98629 1.22353 0.97455 0.95255 0.86920 1.48600 1.50881 1.05296 1.29665 1.21588 0.81177 0.83510 0.84730 1.90697 1.42997 1.84116 1.28786 1.21378 1.04075 0.78238 0.95982 1.47564 1.26674 1.20791 1.37936 1.20809 0.95785 0.91323 0.90291 1.20701 0.95020 0.96388 0.96083 1.20754 1.01623 0.92399 0.97157 1.21842 0.92611 0.97458 0.97725 1.21475 0.98937 0.99073 0.95140 1.21060 0.97703 0.91949 0.97856 1.20411 1.00735 0.97276 1.01332 1.18918 0.80572 0.84189 0.82492 1.90730 1.40040 1.77726 1.37563 1.22258 0.96770 0.84740 0.97873 0.94088 0.79630 0.89006 0.92411 0.89538 0.87146 0.86026 0.81441 0.84155 0.88241 0.81677 0.81277 0.82439 0.86019 0.92232 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 3 Si 0.98 45.19 29.55 68.60 2.03 47.22 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.24 -12.59 9.98 84.03 0.84 -11.75 16 8 H 0.09 4.25 7.83 -2.92 -0.02 4.22 16 9 N -0.73 -36.02 5.28 -316.37 -1.67 -37.69 16 10 C 0.17 6.23 3.68 46.38 0.17 6.40 16 11 H 0.07 2.47 8.13 -2.39 -0.02 2.45 16 12 C -0.14 -4.24 6.65 31.78 0.21 -4.03 16 13 C 0.10 2.14 6.48 86.73 0.56 2.70 16 14 N -0.61 -17.62 3.34 -810.98 -2.71 -20.33 16 15 C 0.50 14.97 7.92 87.66 0.69 15.66 16 16 O -0.59 -23.39 16.70 -3.02 -0.05 -23.44 16 17 C 0.13 2.50 5.73 85.64 0.49 2.99 16 18 N -0.60 -13.73 2.45 -834.00 -2.05 -15.77 16 19 C 0.14 2.05 7.38 85.63 0.63 2.68 16 20 C -0.08 -1.34 6.38 -19.63 -0.13 -1.46 16 21 C -0.10 -1.01 10.03 22.17 0.22 -0.79 16 22 C -0.08 -0.67 10.05 22.36 0.22 -0.44 16 23 C -0.13 -1.56 10.02 22.23 0.22 -1.34 16 24 C -0.07 -1.33 10.10 22.53 0.23 -1.10 16 25 C -0.19 -4.65 6.26 -20.14 -0.13 -4.77 16 26 C 0.55 16.58 7.97 86.75 0.69 17.27 16 27 O -0.58 -22.54 17.71 -3.91 -0.07 -22.61 16 28 C 0.11 3.93 6.55 86.79 0.57 4.50 16 29 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.37 20.21 7.71 -92.71 -0.71 19.50 16 31 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 2.31 8.01 -2.39 -0.02 2.29 16 36 H 0.17 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.14 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 40 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 41 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 44 H 0.05 1.95 8.00 -2.39 -0.02 1.93 16 Total: -1.00 -86.05 375.36 2.05 -84.00 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.31 Total: 25.32 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 5.97 Total: 22.52 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -6.14 Total: -133.02 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -0.12 Total: -46.04 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -86.05 2.05 -84.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970518621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.060 kcal (2) G-P(sol) polarization free energy of solvation -86.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds