Wall clock time and date at job start Tue Mar 31 2020 06:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99852 * 2 1 4 4 H 1.48499 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46919 * 299.99636 * 3 2 1 6 6 H 1.48504 * 109.46991 * 59.99839 * 3 2 1 7 7 C 1.38817 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99902 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99730 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99847 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.88608 * 37.42229 * 10 9 7 12 12 C 1.55159 * 111.00108 * 273.54502 * 10 9 7 13 13 C 1.54328 * 102.94228 * 206.38464 * 12 10 9 14 14 N 1.47023 * 107.26831 * 22.19489 * 13 12 10 15 15 C 1.34775 * 125.64504 * 181.02331 * 14 13 12 16 16 O 1.21286 * 120.00018 * 180.02562 * 15 14 13 17 17 C 1.50694 * 120.00079 * 0.02562 * 15 14 13 18 18 C 1.53007 * 109.47062 * 180.02562 * 17 15 14 19 19 H 1.09000 * 110.56281 * 307.67452 * 18 17 15 20 20 C 1.51396 * 110.50910 * 70.35260 * 18 17 15 21 21 O 1.21289 * 126.43945 * 298.59882 * 20 18 17 22 22 N 1.34371 * 107.11363 * 118.64889 * 20 18 17 23 23 C 1.39527 * 112.24810 * 359.97438 * 22 20 18 24 24 C 1.39363 * 130.83060 * 180.02562 * 23 22 20 25 25 C 1.37940 * 120.13490 * 179.76295 * 24 23 22 26 26 C 1.38297 * 120.37555 * 0.52575 * 25 24 23 27 27 C 1.38393 * 119.82458 * 359.45330 * 26 25 24 28 28 C 1.37681 * 119.91456 * 0.28700 * 27 26 25 29 29 C 1.47420 * 108.70480 * 1.28357 * 14 13 12 30 30 H 0.96995 * 119.99809 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99905 * 359.97438 * 9 7 2 32 32 H 1.09001 * 110.71970 * 88.02154 * 12 10 9 33 33 H 1.08999 * 110.72453 * 324.74994 * 12 10 9 34 34 H 1.08994 * 109.88048 * 262.77495 * 13 12 10 35 35 H 1.08995 * 109.88147 * 141.61055 * 13 12 10 36 36 H 1.08992 * 109.47364 * 60.00248 * 17 15 14 37 37 H 1.08996 * 109.47218 * 299.99605 * 17 15 14 38 38 H 0.96997 * 123.87676 * 179.97438 * 22 20 18 39 39 H 1.08006 * 119.93075 * 0.02562 * 24 23 22 40 40 H 1.08008 * 119.81156 * 180.25604 * 25 24 23 41 41 H 1.08002 * 120.09123 * 179.73973 * 26 25 24 42 42 H 1.07997 * 120.04691 * 180.30200 * 27 26 25 43 43 H 1.09005 * 110.36631 * 94.48552 * 29 14 13 44 44 H 1.08998 * 110.37242 * 216.80978 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0017 11 1 2.9524 -3.5886 0.6212 12 6 2.4149 -4.0942 -1.4436 13 6 2.5194 -5.6293 -1.3243 14 7 1.7465 -6.0286 -0.1391 15 6 1.6062 -7.2881 0.3194 16 8 0.9416 -7.5020 1.3112 17 6 2.2751 -8.4308 -0.4001 18 6 1.9578 -9.7428 0.3204 19 1 2.1958 -9.6643 1.3812 20 6 0.5027 -10.1145 0.1291 21 8 -0.4590 -9.4688 0.4885 22 7 0.4772 -11.2948 -0.5126 23 6 1.7583 -11.7761 -0.7846 24 6 2.1772 -12.9421 -1.4226 25 6 3.5230 -13.2005 -1.5794 26 6 4.4666 -12.3122 -1.0965 27 6 4.0584 -11.1519 -0.4621 28 6 2.7156 -10.8890 -0.3090 29 6 1.1452 -4.8238 0.4611 30 1 -0.4849 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 3.3685 -3.6656 -1.7520 33 1 1.6226 -3.8144 -2.1379 34 1 3.5624 -5.9214 -1.2024 35 1 2.1022 -6.0996 -2.2146 36 1 3.3534 -8.2727 -0.4097 37 1 1.9061 -8.4809 -1.4245 38 1 -0.3382 -11.7590 -0.7585 39 1 1.4464 -13.6429 -1.7989 40 1 3.8418 -14.1038 -2.0784 41 1 5.5192 -12.5211 -1.2180 42 1 4.7921 -10.4533 -0.0879 43 1 0.1296 -4.6822 0.0913 44 1 1.1466 -4.9004 1.5484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970851740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:03 Heat of formation + Delta-G solvation = -12.772297 kcal Electronic energy + Delta-G solvation = -27270.128456 eV Core-core repulsion = 23380.888403 eV Total energy + Delta-G solvation = -3889.240052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.92573 -39.67219 -38.59751 -37.23874 -35.88499 -34.11555 -33.77665 -31.56488 -30.57145 -29.57494 -29.39238 -27.92123 -26.10653 -23.63147 -22.98044 -22.72129 -21.78715 -21.00616 -20.06179 -18.95374 -18.19479 -17.38690 -17.24761 -16.76552 -16.26332 -16.07100 -15.93360 -15.04801 -14.82368 -14.63424 -14.36296 -14.24447 -13.78813 -13.58199 -13.29246 -13.21652 -13.19094 -12.88886 -12.65086 -12.33668 -12.21444 -12.06628 -11.81299 -11.57871 -11.28045 -11.15041 -11.13071 -10.86070 -10.67874 -10.29318 -10.15676 -10.02793 -9.77461 -9.62655 -9.27189 -8.96251 -8.38404 -8.34028 -7.04192 -5.81916 -3.12553 0.79508 0.90060 2.29169 2.70156 2.84112 3.14094 3.39619 3.40811 3.46432 3.48808 3.81095 4.02774 4.40994 4.54348 4.54851 4.63286 4.72299 4.88881 4.90974 5.01550 5.06666 5.19691 5.24725 5.32715 5.39738 5.50314 5.56987 5.58672 5.61853 5.71270 5.79146 5.97064 5.99717 6.07856 6.15945 6.26551 6.28775 6.40390 6.50735 6.57741 6.63203 6.65848 6.92908 7.65882 7.77761 7.81675 8.35091 8.38856 9.47006 10.01621 10.36419 11.40369 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.027866 B = 0.002242 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.577525 B =12485.656752 C =13129.841837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.716 5.716 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.155 4.155 13 C 0.101 3.899 14 N -0.615 5.615 15 C 0.518 3.482 16 O -0.520 6.520 17 C -0.112 4.112 18 C -0.065 4.065 19 H 0.132 0.868 20 C 0.527 3.473 21 O -0.462 6.462 22 N -0.668 5.668 23 C 0.151 3.849 24 C -0.144 4.144 25 C -0.084 4.084 26 C -0.144 4.144 27 C -0.061 4.061 28 C -0.140 4.140 29 C 0.101 3.899 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.411 0.589 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.067 0.933 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 -28.927 -5.741 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.196 4.196 13 C -0.022 4.022 14 N -0.350 5.350 15 C 0.305 3.695 16 O -0.396 6.396 17 C -0.152 4.152 18 C -0.087 4.087 19 H 0.150 0.850 20 C 0.313 3.687 21 O -0.331 6.331 22 N -0.313 5.313 23 C 0.053 3.947 24 C -0.165 4.165 25 C -0.103 4.103 26 C -0.163 4.163 27 C -0.080 4.080 28 C -0.143 4.143 29 C -0.022 4.022 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.249 0.751 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.086 0.914 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.912 -28.440 -4.872 30.200 hybrid contribution -0.267 0.595 -0.395 0.763 sum 8.645 -27.845 -5.267 29.628 Atomic orbital electron populations 1.69676 1.05154 1.25758 1.57138 1.24788 0.95538 0.97836 1.02623 0.86098 0.78759 0.83957 0.77214 1.20489 1.21821 1.21801 1.19248 0.91058 0.83767 1.43306 0.90925 1.42278 1.05867 0.99366 1.88102 1.21341 0.94165 0.85655 0.92840 0.91895 1.23411 1.02790 0.91290 1.02126 1.22097 0.95106 0.97645 0.87398 1.48408 1.51121 1.06190 1.29282 1.20006 0.81689 0.82552 0.85205 1.90785 1.39705 1.83251 1.25843 1.21401 1.02997 0.90586 1.00229 1.20446 0.92022 0.93000 1.03217 0.85034 1.20506 0.91707 0.79832 0.76636 1.90915 1.40682 1.53812 1.47708 1.43890 1.07182 1.22816 1.57362 1.18193 0.84315 0.94997 0.97203 1.20376 0.96676 0.96053 1.03384 1.20893 0.91816 0.99295 0.98255 1.21073 0.99855 0.94692 1.00655 1.20330 0.93348 0.97077 0.97225 1.19816 0.93678 0.96730 1.04060 1.22542 0.97400 0.83444 0.98804 0.93403 0.77922 0.90730 0.90581 0.91880 0.92255 0.87466 0.88730 0.75068 0.85678 0.85273 0.85281 0.85197 0.91437 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.56 9.98 -15.06 -0.15 -6.71 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.59 5.28 -51.24 -0.27 -17.86 16 10 C 0.17 3.34 3.70 -65.66 -0.24 3.09 16 11 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 12 C -0.15 -2.50 6.64 -24.89 -0.17 -2.67 16 13 C 0.10 1.31 6.48 -3.06 -0.02 1.29 16 14 N -0.61 -9.63 3.32 -170.39 -0.57 -10.19 16 15 C 0.52 8.08 7.55 -10.99 -0.08 7.99 16 16 O -0.52 -10.18 14.22 -15.53 -0.22 -10.40 16 17 C -0.11 -1.20 4.41 -27.88 -0.12 -1.32 16 18 C -0.07 -0.71 2.59 -92.36 -0.24 -0.94 16 19 H 0.13 1.49 7.90 -51.93 -0.41 1.08 16 20 C 0.53 6.88 7.83 -10.83 -0.08 6.80 16 21 O -0.46 -8.20 15.97 -15.54 -0.25 -8.45 16 22 N -0.67 -6.28 5.88 -9.70 -0.06 -6.33 16 23 C 0.15 1.25 7.11 -83.69 -0.60 0.66 16 24 C -0.14 -0.90 10.07 -39.27 -0.40 -1.29 16 25 C -0.08 -0.44 10.01 -39.67 -0.40 -0.84 16 26 C -0.14 -0.78 10.07 -39.50 -0.40 -1.18 16 27 C -0.06 -0.40 10.04 -39.73 -0.40 -0.80 16 28 C -0.14 -1.19 5.67 -104.37 -0.59 -1.78 16 29 C 0.10 1.86 6.53 -2.41 -0.02 1.84 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 10.20 7.71 -40.82 -0.31 9.89 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.41 2.98 8.96 -40.82 -0.37 2.62 16 39 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 40 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 41 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.07 1.32 8.01 -51.93 -0.42 0.90 16 44 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -35.14 368.75 -10.22 -45.36 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.12 Total: 8.70 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -4.00 Total: 3.73 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.17 Total: -61.50 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.47 Total: -18.85 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.14 -10.22 -45.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970851740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.584 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds