Wall clock time and date at job start Tue Mar 31 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46941 * 239.99656 * 3 2 1 5 5 H 1.48500 * 109.47327 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47031 * 120.00201 * 3 2 1 7 7 C 1.38813 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99483 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00550 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00274 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.88427 * 37.42961 * 10 9 7 12 12 C 1.55153 * 111.00625 * 273.54802 * 10 9 7 13 13 C 1.54323 * 103.10236 * 206.29678 * 12 10 9 14 14 N 1.47486 * 107.03754 * 22.24109 * 13 12 10 15 15 C 1.34774 * 125.59714 * 180.99239 * 14 13 12 16 16 O 1.21276 * 120.00198 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.99506 * 0.03910 * 15 14 13 18 18 C 1.53004 * 109.47083 * 179.97438 * 17 15 14 19 19 H 1.09001 * 110.44968 * 54.29948 * 18 17 15 20 20 C 1.51395 * 110.51171 * 291.69960 * 18 17 15 21 21 O 1.21290 * 126.44342 * 61.31773 * 20 18 17 22 22 N 1.34371 * 107.11120 * 241.35073 * 20 18 17 23 23 C 1.39528 * 112.24899 * 359.97438 * 22 20 18 24 24 C 1.39366 * 130.82763 * 180.02562 * 23 22 20 25 25 C 1.37930 * 120.13561 * 179.97438 * 24 23 22 26 26 C 1.38307 * 120.37404 * 0.02562 * 25 24 23 27 27 C 1.38390 * 119.82635 * 0.02562 * 26 25 24 28 28 C 1.37442 * 120.00511 * 359.89306 * 27 26 25 29 29 C 1.47428 * 108.75727 * 1.02624 * 14 13 12 30 30 H 0.97005 * 119.99913 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99803 * 0.02562 * 9 7 2 32 32 H 1.09002 * 110.72030 * 324.74944 * 12 10 9 33 33 H 1.09003 * 110.72184 * 87.84595 * 12 10 9 34 34 H 1.09000 * 109.88693 * 141.69901 * 13 12 10 35 35 H 1.09005 * 109.88012 * 262.86516 * 13 12 10 36 36 H 1.08997 * 109.47634 * 300.00232 * 17 15 14 37 37 H 1.09000 * 109.47268 * 60.00297 * 17 15 14 38 38 H 0.97004 * 123.87372 * 179.97438 * 22 20 18 39 39 H 1.08009 * 119.93068 * 0.02562 * 24 23 22 40 40 H 1.08003 * 119.81116 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.08509 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.04324 * 180.02562 * 27 26 25 43 43 H 1.09000 * 110.36462 * 217.05803 * 29 14 13 44 44 H 1.08996 * 110.46287 * 94.77884 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9526 -3.5890 0.6195 12 6 2.4137 -4.0937 -1.4451 13 6 2.5213 -5.6288 -1.3302 14 7 1.7460 -6.0286 -0.1409 15 6 1.6056 -7.2883 0.3170 16 8 0.9414 -7.5025 1.3088 17 6 2.2743 -8.4307 -0.4033 18 6 1.9581 -9.7429 0.3173 19 1 0.8807 -9.8680 0.4254 20 6 2.6352 -9.7813 1.6708 21 8 2.4492 -9.0139 2.5915 22 7 3.4814 -10.8250 1.6602 23 6 3.4598 -11.5102 0.4449 24 6 4.1696 -12.6311 0.0182 25 6 3.9726 -13.1336 -1.2511 26 6 3.0714 -12.5308 -2.1099 27 6 2.3637 -11.4168 -1.6937 28 6 2.5555 -10.9135 -0.4292 29 6 1.1497 -4.8233 0.4633 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.6209 -3.8135 -2.1387 33 1 3.3656 -3.6625 -1.7551 34 1 2.1052 -6.0975 -2.2219 35 1 3.5650 -5.9192 -1.2089 36 1 1.9052 -8.4802 -1.4277 37 1 3.3527 -8.2727 -0.4129 38 1 4.0428 -11.0736 2.4112 39 1 4.8748 -13.1078 0.6831 40 1 4.5251 -14.0028 -1.5762 41 1 2.9205 -12.9284 -3.1026 42 1 1.6588 -10.9435 -2.3612 43 1 1.1565 -4.9010 1.5505 44 1 0.1321 -4.6787 0.1004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970851741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:07 Heat of formation + Delta-G solvation = -12.264985 kcal Electronic energy + Delta-G solvation = -27297.524140 eV Core-core repulsion = 23408.306086 eV Total energy + Delta-G solvation = -3889.218054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.90818 -39.64664 -38.58458 -37.22019 -35.87192 -34.09924 -33.77495 -31.55621 -30.57501 -29.56903 -29.38392 -27.91873 -26.09483 -23.62168 -22.97357 -22.71127 -21.78279 -21.00516 -20.04149 -18.94176 -18.18421 -17.35887 -17.27407 -16.77520 -16.33112 -16.06471 -15.69362 -15.25397 -14.72110 -14.59870 -14.37291 -14.20807 -13.87912 -13.50652 -13.30876 -13.23597 -13.19363 -12.76650 -12.64798 -12.39089 -12.27989 -11.97560 -11.80057 -11.58942 -11.26921 -11.13935 -11.12102 -10.83414 -10.67438 -10.31183 -10.15065 -10.05382 -9.75941 -9.60865 -9.27372 -8.94730 -8.36932 -8.33475 -7.03901 -5.81267 -3.11799 0.79493 0.91045 2.30448 2.71037 2.85354 3.14116 3.40031 3.42093 3.46871 3.47788 3.81311 4.03366 4.40892 4.54830 4.55626 4.63651 4.72292 4.89031 4.91005 5.01806 5.07641 5.20060 5.25784 5.33070 5.39644 5.50555 5.57165 5.59208 5.62054 5.71936 5.79517 5.97758 6.00674 6.08297 6.16713 6.27213 6.29032 6.40309 6.51699 6.58258 6.64466 6.66656 6.93558 7.65690 7.77962 7.83243 8.35913 8.40077 9.47649 10.02043 10.37133 11.40908 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.027338 B = 0.002241 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.955818 B =12490.895415 C =12879.302122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.715 5.715 10 C 0.171 3.829 11 H 0.062 0.938 12 C -0.155 4.155 13 C 0.101 3.899 14 N -0.616 5.616 15 C 0.517 3.483 16 O -0.518 6.518 17 C -0.112 4.112 18 C -0.065 4.065 19 H 0.131 0.869 20 C 0.527 3.473 21 O -0.459 6.459 22 N -0.668 5.668 23 C 0.151 3.849 24 C -0.144 4.144 25 C -0.084 4.084 26 C -0.144 4.144 27 C -0.061 4.061 28 C -0.140 4.140 29 C 0.101 3.899 30 H 0.257 0.743 31 H 0.386 0.614 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.411 0.589 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.076 0.924 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.701 -29.019 -6.409 30.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.080 0.920 12 C -0.196 4.196 13 C -0.022 4.022 14 N -0.351 5.351 15 C 0.304 3.696 16 O -0.394 6.394 17 C -0.152 4.152 18 C -0.087 4.087 19 H 0.149 0.851 20 C 0.313 3.687 21 O -0.328 6.328 22 N -0.313 5.313 23 C 0.053 3.947 24 C -0.165 4.165 25 C -0.102 4.102 26 C -0.163 4.163 27 C -0.080 4.080 28 C -0.143 4.143 29 C -0.022 4.022 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.249 0.751 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.217 -28.468 -5.285 30.097 hybrid contribution 0.580 0.716 0.192 0.942 sum 8.798 -27.751 -5.093 29.555 Atomic orbital electron populations 1.69656 1.05141 1.25979 1.57028 1.24775 0.95542 0.97806 1.02586 0.86238 0.78513 0.83350 0.77874 1.21200 1.21658 1.21182 1.19158 0.91005 0.83802 1.43522 0.91066 1.42245 1.05824 0.99326 1.88139 1.21292 0.94244 0.85697 0.92816 0.92004 1.23403 1.02798 0.91320 1.02093 1.22182 0.95097 0.97601 0.87331 1.48523 1.51310 1.06143 1.29117 1.20015 0.82039 0.82633 0.84893 1.90793 1.40203 1.83383 1.25004 1.21407 1.02633 0.90661 1.00542 1.20434 1.03106 0.92953 0.92173 0.85141 1.20495 0.78984 0.79497 0.89755 1.90923 1.62053 1.40406 1.39442 1.43898 1.42787 1.29752 1.14830 1.18282 0.96642 0.93906 0.85884 1.20373 1.02332 0.96223 0.97618 1.20890 0.97463 0.99263 0.92625 1.21067 0.98134 0.96785 1.00326 1.20257 0.98607 0.95469 0.93635 1.19822 1.00470 0.98626 0.95341 1.22484 0.97380 0.83482 0.98812 0.93313 0.77929 0.90532 0.90804 0.91968 0.92052 0.87520 0.88703 0.75067 0.85685 0.85282 0.85291 0.85245 0.90580 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.64 9.98 -15.06 -0.15 -6.79 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.63 5.28 -51.35 -0.27 -17.90 16 10 C 0.17 3.38 3.69 -65.78 -0.24 3.13 16 11 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 12 C -0.15 -2.51 6.63 -24.90 -0.17 -2.67 16 13 C 0.10 1.31 6.52 -2.81 -0.02 1.29 16 14 N -0.62 -9.66 3.34 -170.14 -0.57 -10.22 16 15 C 0.52 8.07 7.54 -10.99 -0.08 7.99 16 16 O -0.52 -10.17 14.04 -16.51 -0.23 -10.40 16 17 C -0.11 -1.20 4.41 -27.88 -0.12 -1.32 16 18 C -0.07 -0.70 2.60 -92.37 -0.24 -0.94 16 19 H 0.13 1.47 7.96 -51.93 -0.41 1.05 16 20 C 0.53 6.90 7.82 -10.83 -0.08 6.81 16 21 O -0.46 -8.18 15.74 -16.52 -0.26 -8.44 16 22 N -0.67 -6.31 5.88 -9.62 -0.06 -6.36 16 23 C 0.15 1.26 7.12 -83.57 -0.59 0.66 16 24 C -0.14 -0.91 10.07 -39.27 -0.40 -1.30 16 25 C -0.08 -0.44 10.01 -39.67 -0.40 -0.84 16 26 C -0.14 -0.78 10.07 -39.50 -0.40 -1.18 16 27 C -0.06 -0.40 10.02 -39.82 -0.40 -0.80 16 28 C -0.14 -1.18 5.68 -104.34 -0.59 -1.78 16 29 C 0.10 1.87 6.53 -2.52 -0.02 1.85 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.39 10.15 7.71 -40.82 -0.31 9.84 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.41 3.01 8.96 -40.82 -0.37 2.64 16 39 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 40 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 41 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 44 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -35.11 368.44 -10.25 -45.37 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.12 Total: 8.68 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -4.00 Total: 3.72 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.17 Total: -61.58 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.49 Total: -18.84 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.11 -10.25 -45.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970851741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.101 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds