Wall clock time and date at job start Tue Mar 31 2020 06:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00191 * 2 1 4 4 H 1.48501 * 109.46659 * 269.99671 * 3 2 1 5 5 H 1.48493 * 109.47178 * 29.99447 * 3 2 1 6 6 H 1.48499 * 109.46935 * 149.99941 * 3 2 1 7 7 C 1.38812 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00379 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00136 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00430 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.49350 * 325.00343 * 10 9 7 12 12 C 1.53036 * 109.52560 * 204.91951 * 10 9 7 13 13 C 1.53039 * 109.53673 * 178.66736 * 12 10 9 14 14 C 1.53188 * 109.31366 * 61.36583 * 13 12 10 15 15 N 1.46926 * 108.77568 * 305.36510 * 14 13 12 16 16 C 1.34775 * 120.63082 * 233.58313 * 15 14 13 17 17 O 1.21551 * 120.00106 * 174.18415 * 16 15 14 18 18 C 1.47862 * 119.99855 * 354.18738 * 16 15 14 19 19 C 1.39611 * 119.97429 * 138.69144 * 18 16 15 20 20 C 1.38090 * 119.69374 * 179.97438 * 19 18 16 21 21 C 1.37849 * 120.10933 * 0.02562 * 20 19 18 22 22 C 1.39031 * 121.03430 * 359.97438 * 21 20 19 23 23 C 1.39121 * 119.09579 * 359.74883 * 22 21 20 24 24 N 1.39589 * 110.21020 * 180.02562 * 22 21 20 25 25 C 1.34351 * 112.24798 * 359.97438 * 24 22 21 26 26 O 1.21288 * 126.42566 * 179.97438 * 25 24 22 27 27 C 1.51180 * 132.66169 * 179.97438 * 21 20 19 28 28 C 1.46921 * 118.73728 * 53.61133 * 15 14 13 29 29 H 0.97004 * 119.99606 * 0.02562 * 1 2 3 30 30 H 0.97010 * 119.99815 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.46167 * 298.68842 * 12 10 9 32 32 H 1.08999 * 109.45952 * 58.64790 * 12 10 9 33 33 H 1.08999 * 109.49912 * 301.41205 * 13 12 10 34 34 H 1.09001 * 109.52402 * 181.33616 * 13 12 10 35 35 H 1.09002 * 109.59023 * 185.57629 * 14 13 12 36 36 H 1.09006 * 109.70461 * 65.22226 * 14 13 12 37 37 H 1.08007 * 120.15503 * 359.95606 * 19 18 16 38 38 H 1.08002 * 119.94761 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.99552 * 180.27546 * 23 22 21 40 40 H 0.96994 * 123.87786 * 180.02562 * 24 22 21 41 41 H 1.09002 * 110.50835 * 298.64888 * 27 21 20 42 42 H 1.09003 * 110.50679 * 61.34963 * 27 21 20 43 43 H 1.09004 * 109.58216 * 186.60694 * 28 15 14 44 44 H 1.08996 * 109.71163 * 66.25013 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5648 -3.2070 0.5900 12 6 5.5004 -2.2601 0.6094 13 6 6.2535 -3.5920 0.6400 14 6 6.4264 -4.1093 -0.7915 15 7 5.1060 -4.1772 -1.4325 16 6 4.6787 -5.3200 -2.0052 17 8 3.5455 -5.3960 -2.4383 18 6 5.5884 -6.4812 -2.1067 19 6 5.1083 -7.7676 -1.8539 20 6 5.9628 -8.8480 -1.9509 21 6 7.2837 -8.6562 -2.2952 22 6 7.7803 -7.3829 -2.5506 23 6 6.9224 -6.2915 -2.4600 24 7 9.1359 -7.4505 -2.8768 25 6 9.6012 -8.7107 -2.8586 26 8 10.7363 -9.0628 -3.1011 27 6 8.4431 -9.6088 -2.4798 28 6 4.2607 -2.9756 -1.4378 29 1 -0.4850 0.8401 -0.0004 30 1 3.8647 -0.3622 0.0014 31 1 6.0561 -1.5425 0.0058 32 1 5.3976 -1.8777 1.6249 33 1 5.6861 -4.3175 1.2229 34 1 7.2332 -3.4462 1.0950 35 1 6.8734 -5.1032 -0.7695 36 1 7.0702 -3.4314 -1.3520 37 1 4.0733 -7.9170 -1.5835 38 1 5.5956 -9.8449 -1.7566 39 1 7.2917 -5.2964 -2.6597 40 1 9.6796 -6.6764 -3.0911 41 1 8.6564 -10.1354 -1.5496 42 1 8.2315 -10.3170 -3.2809 43 1 3.2787 -3.2215 -1.8420 44 1 4.7247 -2.2024 -2.0501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999230950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:21 Heat of formation + Delta-G solvation = -10.474736 kcal Electronic energy + Delta-G solvation = -27619.915061 eV Core-core repulsion = 23730.774638 eV Total energy + Delta-G solvation = -3889.140423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.91678 -40.28792 -38.59404 -37.44483 -35.91820 -34.74048 -32.97990 -32.24632 -31.36833 -30.14542 -29.27829 -28.35413 -25.45929 -23.98424 -23.14286 -22.64241 -21.82166 -21.72926 -20.44549 -19.39264 -17.99252 -17.61778 -17.50724 -16.78383 -16.49364 -16.05205 -15.38194 -15.31436 -14.97455 -14.60598 -14.54993 -14.32954 -14.12642 -13.78158 -13.64411 -13.51985 -13.19174 -13.03338 -12.75288 -12.64252 -12.46672 -12.43234 -11.79915 -11.55467 -11.31765 -11.19987 -10.96399 -10.78509 -10.71244 -10.68674 -10.32415 -9.95256 -9.87642 -9.61282 -9.21658 -9.15734 -8.54635 -8.44907 -7.33422 -5.79780 -3.17570 0.49441 0.76227 1.95941 2.46857 2.70608 3.00155 3.33993 3.36372 3.40587 3.42732 3.62804 3.89176 4.30241 4.32764 4.55140 4.69717 4.78091 4.81442 4.85768 4.91653 4.96354 5.10533 5.24498 5.25730 5.33808 5.39908 5.45226 5.50215 5.66077 5.73368 5.82496 5.86708 5.94998 5.98111 6.03445 6.07702 6.18232 6.25610 6.32993 6.47206 6.58036 6.67264 6.84256 7.46807 7.48877 7.95748 8.20541 8.38852 9.15707 9.87294 10.05457 11.38124 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.002578 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.375097 B =10857.061525 C =11486.336815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.129 4.129 14 C 0.097 3.903 15 N -0.599 5.599 16 C 0.553 3.447 17 O -0.525 6.525 18 C -0.084 4.084 19 C -0.084 4.084 20 C -0.070 4.070 21 C -0.126 4.126 22 C 0.132 3.868 23 C -0.108 4.108 24 N -0.658 5.658 25 C 0.529 3.471 26 O -0.506 6.506 27 C -0.116 4.116 28 C 0.092 3.908 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.414 0.586 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.060 -17.628 -2.753 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.063 3.937 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.026 4.026 15 N -0.332 5.332 16 C 0.340 3.660 17 O -0.402 6.402 18 C -0.088 4.088 19 C -0.103 4.103 20 C -0.089 4.089 21 C -0.129 4.129 22 C 0.035 3.965 23 C -0.130 4.130 24 N -0.302 5.302 25 C 0.317 3.683 26 O -0.380 6.380 27 C -0.155 4.155 28 C -0.032 4.032 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.253 0.747 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.115 0.885 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.814 -18.005 -3.094 26.951 hybrid contribution 0.841 1.860 -0.160 2.047 sum 20.656 -16.146 -3.254 26.418 Atomic orbital electron populations 1.69709 1.05118 1.25874 1.57003 1.24691 0.95230 0.97209 1.01767 0.86558 0.79190 0.85025 0.77777 1.21050 1.21698 1.20315 1.19098 0.80349 0.94877 1.43532 0.89010 1.42728 1.04158 1.01700 1.89857 1.20451 0.90961 0.89548 0.92775 0.92163 1.21871 0.96712 0.96394 1.01857 1.21874 1.00840 0.98187 0.95922 1.22063 0.84492 1.02120 0.93886 1.48155 1.18190 1.11587 1.55286 1.18258 0.86737 0.82314 0.78700 1.90841 1.18819 1.82307 1.48192 1.19732 0.92748 0.94628 1.01675 1.21192 1.00465 0.90271 0.98402 1.20248 0.90671 0.99632 0.98311 1.19971 0.95048 0.93360 1.04542 1.17924 0.83789 0.95088 0.99685 1.20555 0.91663 0.97648 1.03109 1.43729 1.09138 1.10638 1.66684 1.20593 0.88947 0.83077 0.75661 1.90837 1.19994 1.78358 1.48834 1.21107 0.90729 0.98121 1.05565 1.22752 0.95717 0.83957 1.00794 0.92981 0.80463 0.92156 0.91280 0.91269 0.90908 0.89400 0.91430 0.84048 0.84470 0.84635 0.74726 0.85594 0.85628 0.88460 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.64 27.74 -169.99 -4.71 16.93 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 7 C -0.25 -6.91 10.41 -15.06 -0.16 -7.07 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.74 -16.88 4.93 -53.31 -0.26 -17.15 16 10 C 0.17 3.17 2.92 -67.81 -0.20 2.97 16 11 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 12 C -0.13 -1.80 5.36 -26.69 -0.14 -1.94 16 13 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 14 C 0.10 0.96 4.92 -3.71 -0.02 0.94 16 15 N -0.60 -8.30 2.97 -173.87 -0.52 -8.82 16 16 C 0.55 8.17 7.30 -12.32 -0.09 8.08 16 17 O -0.53 -10.09 16.36 5.32 0.09 -10.00 16 18 C -0.08 -0.91 5.07 -105.05 -0.53 -1.44 16 19 C -0.08 -0.78 9.66 -39.12 -0.38 -1.16 16 20 C -0.07 -0.48 10.02 -39.78 -0.40 -0.88 16 21 C -0.13 -0.86 6.35 -104.24 -0.66 -1.52 16 22 C 0.13 0.99 7.10 -83.70 -0.59 0.40 16 23 C -0.11 -0.91 7.42 -38.86 -0.29 -1.20 16 24 N -0.66 -4.50 5.88 -9.72 -0.06 -4.56 16 25 C 0.53 4.33 8.71 -10.84 -0.09 4.24 16 26 O -0.51 -5.94 18.03 5.55 0.10 -5.84 16 27 C -0.12 -0.63 6.88 -28.47 -0.20 -0.82 16 28 C 0.09 1.60 6.03 -3.71 -0.02 1.57 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.36 8.01 5.66 -40.82 -0.23 7.78 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.72 4.82 -51.93 -0.25 0.47 16 36 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 37 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.98 6.70 -52.48 -0.35 0.63 16 40 H 0.41 2.12 8.96 -40.82 -0.37 1.76 16 41 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 2.05 7.00 -51.93 -0.36 1.69 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 359.13 15.07 5.41 5.41 Total: -1.00 -35.57 359.13 -9.01 -44.57 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.80 Total: 6.99 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -4.03 Total: 0.77 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.06 Total: -58.83 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.19 Total: -15.84 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.57 -9.01 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999230950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.098 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds