Wall clock time and date at job start Tue Mar 31 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99964 * 2 1 4 4 H 1.48510 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47172 * 300.00057 * 3 2 1 6 6 H 1.48499 * 109.47112 * 60.00393 * 3 2 1 7 7 C 1.38813 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00445 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99690 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99619 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.78537 * 31.76147 * 10 9 7 12 12 C 1.55155 * 110.71830 * 155.00481 * 10 9 7 13 13 C 1.54905 * 101.58391 * 153.86531 * 12 10 9 14 14 N 1.47422 * 104.83197 * 322.98597 * 13 12 10 15 15 C 1.34771 * 125.65258 * 204.08916 * 14 13 12 16 16 O 1.21540 * 120.00151 * 180.02562 * 15 14 13 17 17 C 1.48020 * 119.99804 * 0.03006 * 15 14 13 18 18 C 1.39427 * 119.64803 * 180.02562 * 17 15 14 19 19 C 1.38371 * 119.13356 * 180.02562 * 18 17 15 20 20 C 1.39274 * 118.43360 * 359.96091 * 19 18 17 21 21 N 1.39982 * 120.39034 * 180.29824 * 20 19 18 22 22 C 1.35129 * 127.39632 * 184.43121 * 21 20 19 23 23 N 1.30717 * 107.26745 * 179.89630 * 22 21 20 24 24 N 1.28419 * 110.65286 * 0.38153 * 23 22 21 25 25 N 1.28945 * 110.21698 * 359.75592 * 24 23 22 26 26 C 1.39245 * 119.22131 * 0.02562 * 20 19 18 27 27 N 1.31397 * 120.80209 * 0.02562 * 26 20 19 28 28 C 1.47025 * 108.70060 * 24.36062 * 14 13 12 29 29 H 0.97001 * 119.99506 * 359.97438 * 1 2 3 30 30 H 0.96990 * 119.99843 * 0.02562 * 9 7 2 31 31 H 1.08999 * 111.00847 * 35.78794 * 12 10 9 32 32 H 1.09006 * 111.03520 * 271.94999 * 12 10 9 33 33 H 1.09002 * 110.36826 * 204.14808 * 13 12 10 34 34 H 1.08996 * 110.37098 * 81.82608 * 13 12 10 35 35 H 1.07998 * 120.43610 * 359.97438 * 18 17 15 36 36 H 1.07991 * 120.78715 * 180.02562 * 19 18 17 37 37 H 1.08000 * 126.36471 * 0.02911 * 22 21 20 38 38 H 1.07997 * 119.59507 * 179.97438 * 26 20 19 39 39 H 1.09003 * 109.88693 * 118.12910 * 28 14 13 40 40 H 1.08998 * 109.88070 * 239.29545 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0018 -3.5585 0.5359 12 6 1.1934 -4.7898 0.6127 13 6 1.7910 -6.0433 -0.0739 14 7 2.1103 -5.6063 -1.4452 15 6 2.2133 -6.4103 -2.5219 16 8 2.4830 -5.9386 -3.6090 17 6 1.9977 -7.8679 -2.3804 18 6 2.1065 -8.6930 -3.4991 19 6 1.9024 -10.0539 -3.3548 20 6 1.5951 -10.5479 -2.0893 21 7 1.3866 -11.9185 -1.8956 22 6 1.0034 -12.5374 -0.7572 23 7 0.9278 -13.8162 -1.0173 24 7 1.2446 -14.0492 -2.2398 25 7 1.5369 -12.9473 -2.8422 26 6 1.5034 -9.6631 -1.0181 27 7 1.7023 -8.3757 -1.1898 28 6 2.3042 -4.1489 -1.4424 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 0.1427 -4.6646 0.3512 32 1 1.3217 -4.8382 1.6941 33 1 1.0586 -6.8503 -0.0938 34 1 2.6958 -6.3637 0.4425 35 1 2.3463 -8.2753 -4.4657 36 1 1.9804 -10.7176 -4.2031 37 1 0.7958 -12.0634 0.1908 38 1 1.2651 -10.0396 -0.0343 39 1 3.3226 -3.9098 -1.7490 40 1 1.5910 -3.6788 -2.1194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019189652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:29 Heat of formation + Delta-G solvation = 164.056068 kcal Electronic energy + Delta-G solvation = -26479.433869 eV Core-core repulsion = 22526.614078 eV Total energy + Delta-G solvation = -3952.819791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.82309 -41.29106 -39.47342 -37.42631 -36.15275 -34.24964 -33.30102 -32.71708 -31.79673 -31.01773 -29.63893 -27.81939 -26.27458 -25.25415 -24.33279 -23.31546 -22.87013 -22.41460 -20.61953 -19.80275 -19.37794 -17.79209 -17.42380 -17.25124 -17.09639 -16.75157 -16.14798 -15.68603 -15.18995 -14.95074 -14.56009 -14.29582 -14.20277 -13.84596 -13.63058 -13.46390 -13.23470 -12.99181 -12.86326 -12.51915 -12.45458 -11.96276 -11.66042 -11.64836 -11.23165 -11.12945 -10.90530 -10.83645 -10.63415 -10.59599 -10.26029 -10.06627 -9.85209 -9.77333 -9.55274 -9.05525 -8.44301 -7.13753 -5.88300 -3.19303 -0.60779 0.40661 0.72239 1.03776 1.66305 2.39988 2.85375 3.30019 3.32690 3.37816 3.42381 3.44192 3.45921 3.60417 3.81116 4.14210 4.18923 4.34671 4.50529 4.67180 4.71355 4.87958 4.98422 5.04318 5.15378 5.30531 5.34771 5.49799 5.57959 5.65513 5.76479 5.86716 6.01882 6.08386 6.25988 6.33124 6.44438 6.57555 6.80855 6.93452 7.57877 7.61637 7.76812 8.06750 8.29176 9.41265 9.94330 10.28864 11.33657 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.034767 B = 0.002107 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.165088 B =13288.065403 C =13838.282074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.069 0.931 12 C -0.146 4.146 13 C 0.103 3.897 14 N -0.586 5.586 15 C 0.570 3.430 16 O -0.534 6.534 17 C 0.103 3.897 18 C -0.089 4.089 19 C -0.061 4.061 20 C 0.090 3.910 21 N -0.327 5.327 22 C 0.233 3.767 23 N -0.327 5.327 24 N -0.030 5.030 25 N -0.073 5.073 26 C 0.107 3.893 27 N -0.423 5.423 28 C 0.079 3.921 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.244 0.756 38 H 0.174 0.826 39 H 0.062 0.938 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 -23.995 -0.127 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.351 5.351 10 C 0.059 3.941 11 H 0.087 0.913 12 C -0.185 4.185 13 C -0.019 4.019 14 N -0.317 5.317 15 C 0.356 3.644 16 O -0.411 6.411 17 C -0.035 4.035 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.006 4.006 21 N -0.118 5.118 22 C -0.064 4.064 23 N -0.175 5.175 24 N -0.025 5.025 25 N -0.059 5.059 26 C -0.057 4.057 27 N -0.134 5.134 28 C -0.046 4.046 29 H 0.066 0.934 30 H 0.222 0.778 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.260 0.740 38 H 0.191 0.809 39 H 0.080 0.920 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.637 -24.198 -0.860 24.356 hybrid contribution 0.151 1.204 -0.292 1.248 sum 2.788 -22.994 -1.151 23.191 Atomic orbital electron populations 1.69669 1.05182 1.25852 1.56933 1.24786 0.95543 0.97909 1.02320 0.86100 0.78857 0.83851 0.77236 1.20417 1.21752 1.21760 1.19315 0.91161 0.83906 1.43650 0.90827 1.42389 1.05847 0.99444 1.87432 1.21214 0.95462 0.86432 0.90971 0.91336 1.23171 1.00611 0.94408 1.00283 1.22661 1.00658 0.97843 0.80783 1.48436 1.65692 1.09194 1.08363 1.17334 0.79265 0.83907 0.83901 1.90829 1.49618 1.74972 1.25677 1.21584 0.97116 0.95589 0.89243 1.22163 0.95915 0.91787 1.01189 1.21474 0.95509 0.95929 0.95926 1.18920 1.05344 0.78943 0.97405 1.48975 1.46236 1.07179 1.09380 1.27606 0.95122 0.89761 0.93924 1.74536 1.21050 1.13170 1.08709 1.78129 1.07850 1.16791 0.99731 1.82724 1.20806 0.89769 1.12552 1.22789 0.97269 0.87944 0.97654 1.68107 1.09474 1.11946 1.23894 1.23419 1.01545 0.76799 1.02877 0.93364 0.77843 0.90686 0.89999 0.88375 0.91498 0.81676 0.82218 0.73977 0.80922 0.91959 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.57 9.96 -15.06 -0.15 -6.72 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.66 5.15 -51.65 -0.27 -16.92 16 10 C 0.17 3.10 3.60 -66.09 -0.24 2.86 16 11 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 12 C -0.15 -2.04 6.72 -24.59 -0.17 -2.21 16 13 C 0.10 1.23 5.93 -2.53 -0.02 1.22 16 14 N -0.59 -8.72 3.33 -171.56 -0.57 -9.29 16 15 C 0.57 8.41 7.84 -12.25 -0.10 8.31 16 16 O -0.53 -9.52 16.64 5.33 0.09 -9.43 16 17 C 0.10 1.10 6.72 -83.01 -0.56 0.55 16 18 C -0.09 -0.76 9.62 -39.09 -0.38 -1.14 16 19 C -0.06 -0.42 9.81 -39.15 -0.38 -0.80 16 20 C 0.09 0.57 6.73 -83.38 -0.56 0.01 16 21 N -0.33 -2.25 3.85 -11.59 -0.04 -2.29 16 22 C 0.23 1.18 12.16 -90.12 -1.10 0.08 16 23 N -0.33 -2.87 12.15 29.65 0.36 -2.51 16 24 N -0.03 -0.32 13.39 60.35 0.81 0.49 16 25 N -0.07 -0.70 13.41 60.35 0.81 0.11 16 26 C 0.11 0.59 10.65 -17.36 -0.18 0.40 16 27 N -0.42 -3.65 6.57 -9.66 -0.06 -3.71 16 28 C 0.08 1.40 6.63 -3.06 -0.02 1.38 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.39 9.67 7.76 -40.82 -0.32 9.36 16 31 H 0.07 1.11 8.01 -51.93 -0.42 0.70 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.02 5.88 -51.93 -0.31 0.72 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.17 1.33 7.63 -52.49 -0.40 0.93 16 36 H 0.16 0.90 7.85 -52.49 -0.41 0.49 16 37 H 0.24 -0.17 7.23 -52.49 -0.38 -0.55 16 38 H 0.17 0.22 6.91 -52.49 -0.36 -0.14 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -34.08 348.25 -6.11 -40.19 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.24 Total: 4.19 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -3.94 Total: 3.59 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 1.76 Total: -60.46 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.08 -6.11 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019189652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.247 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds