Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99349 * 2 1 4 4 H 1.48496 * 109.47278 * 269.99685 * 3 2 1 5 5 H 1.48502 * 109.47254 * 30.00045 * 3 2 1 6 6 H 1.48501 * 109.46951 * 149.99777 * 3 2 1 7 7 C 1.38809 * 120.00485 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00177 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99929 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00243 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.85061 * 23.80177 * 10 9 7 12 12 C 1.53784 * 113.61717 * 154.99483 * 10 9 7 13 13 C 1.53784 * 87.07861 * 89.20370 * 12 10 9 14 14 H 1.09005 * 113.61209 * 270.80293 * 13 12 10 15 15 N 1.46500 * 113.61484 * 139.98038 * 13 12 10 16 16 C 1.34781 * 119.99628 * 156.52940 * 15 13 12 17 17 O 1.21281 * 120.00231 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99771 * 180.02562 * 16 15 13 19 19 N 1.46498 * 109.47276 * 179.97438 * 18 16 15 20 20 C 1.46732 * 125.62366 * 89.99535 * 19 18 16 21 21 C 1.50832 * 106.30266 * 179.97438 * 20 19 18 22 22 C 1.37479 * 133.32989 * 179.97438 * 21 20 19 23 23 C 1.38471 * 119.99285 * 180.02562 * 22 21 20 24 24 C 1.38381 * 120.18836 * 0.03416 * 23 22 21 25 25 C 1.37942 * 120.32236 * 0.02562 * 24 23 22 26 26 C 1.39620 * 119.82710 * 359.97438 * 25 24 23 27 27 C 1.34416 * 125.62177 * 269.97448 * 19 18 16 28 28 O 1.21552 * 124.85715 * 0.04068 * 27 19 18 29 29 C 1.53784 * 87.17587 * 25.38977 * 13 12 10 30 30 H 0.96990 * 120.00625 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.08991 * 113.61315 * 334.65635 * 12 10 9 33 33 H 1.09000 * 113.61472 * 203.74823 * 12 10 9 34 34 H 0.96989 * 120.00146 * 336.52700 * 15 13 12 35 35 H 1.09000 * 109.47166 * 59.99717 * 18 16 15 36 36 H 1.09004 * 109.46686 * 299.99798 * 18 16 15 37 37 H 1.09002 * 110.10053 * 299.17953 * 20 19 18 38 38 H 1.08996 * 110.09914 * 60.72612 * 20 19 18 39 39 H 1.07998 * 119.98080 * 0.11722 * 22 21 20 40 40 H 1.08000 * 119.90614 * 180.02562 * 23 22 21 41 41 H 1.08004 * 119.83689 * 180.02562 * 24 23 22 42 42 H 1.08004 * 120.08405 * 180.02562 * 25 24 23 43 43 H 1.09000 * 113.61352 * 89.15717 * 29 13 12 44 44 H 1.08995 * 113.61713 * 220.06391 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4705 -2.1374 0.0005 9 7 3.3797 -1.2019 0.0011 10 6 4.1124 -2.4705 0.0011 11 1 3.5284 -3.2966 -0.4047 12 6 5.5265 -2.3653 -0.5940 13 6 6.0130 -2.0255 0.8248 14 1 5.9893 -0.9594 1.0508 15 7 7.2902 -2.6528 1.1732 16 6 8.0663 -2.1128 2.1338 17 8 7.7075 -1.1073 2.7093 18 6 9.3804 -2.7577 2.4918 19 7 10.0296 -1.9861 3.5546 20 6 9.8572 -2.2030 4.9955 21 6 10.7190 -1.1747 5.6846 22 6 10.9681 -0.8846 7.0051 23 6 11.8302 0.1471 7.3365 24 6 12.4423 0.8891 6.3417 25 6 12.1989 0.6078 5.0134 26 6 11.3309 -0.4309 4.6712 27 6 10.8817 -0.9630 3.3704 28 8 11.2309 -0.5361 2.2873 29 6 4.7870 -2.7931 1.3469 30 1 -0.4850 0.8399 -0.0004 31 1 3.8647 -0.3618 0.0007 32 1 5.6419 -1.5457 -1.3031 33 1 5.9124 -3.3117 -0.9728 34 1 7.5773 -3.4567 0.7128 35 1 10.0255 -2.7799 1.6135 36 1 9.2029 -3.7759 2.8381 37 1 8.8125 -2.0624 5.2731 38 1 10.1840 -3.2073 5.2649 39 1 10.4925 -1.4626 7.7836 40 1 12.0252 0.3735 8.3744 41 1 13.1140 1.6923 6.6066 42 1 12.6791 1.1891 4.2401 43 1 4.9702 -3.8567 1.4995 44 1 4.3062 -2.3184 2.2021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020945733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = 18.740995 kcal Electronic energy + Delta-G solvation = -26911.756919 eV Core-core repulsion = 23023.883386 eV Total energy + Delta-G solvation = -3887.873533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49600 -39.90795 -38.53949 -37.94463 -36.26718 -34.18491 -32.86202 -32.23306 -31.48349 -30.37218 -28.32479 -27.02901 -25.26080 -24.65039 -23.41782 -22.40542 -22.07346 -20.90772 -20.10593 -19.00411 -17.77009 -17.37078 -17.35102 -17.14906 -16.47701 -15.92760 -15.70889 -15.25725 -14.92025 -14.71516 -14.52622 -14.26327 -13.89726 -13.79803 -13.60713 -13.52200 -13.13499 -12.77589 -12.74426 -12.57156 -12.25140 -12.18458 -12.10909 -12.01760 -11.47096 -10.96361 -10.86988 -10.44165 -10.28970 -10.23379 -10.14807 -9.89824 -9.61794 -9.45415 -9.28917 -8.98567 -8.93857 -8.82638 -7.32522 -5.80546 -3.17362 0.41907 0.88961 2.24491 2.53431 2.55543 3.23772 3.38857 3.43827 3.46778 3.49616 3.70832 4.05081 4.46402 4.56737 4.57507 4.59942 4.68009 4.82300 4.86882 4.89067 4.96834 5.05468 5.07176 5.07365 5.18009 5.30972 5.38681 5.52113 5.66033 5.71824 5.74517 5.87877 5.96379 5.97903 6.06264 6.13786 6.21683 6.40104 6.46947 6.54456 6.62656 6.63725 6.86052 7.48958 7.84518 7.95692 8.20262 8.38722 9.15911 9.88555 10.06706 11.37222 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.002439 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.116675 B =11478.291183 C =12220.456556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.093 0.907 9 N -0.730 5.730 10 C 0.177 3.823 11 H 0.078 0.922 12 C -0.165 4.165 13 C 0.122 3.878 14 H 0.108 0.892 15 N -0.715 5.715 16 C 0.488 3.512 17 O -0.527 6.527 18 C 0.118 3.882 19 N -0.599 5.599 20 C 0.143 3.857 21 C -0.078 4.078 22 C -0.103 4.103 23 C -0.088 4.088 24 C -0.129 4.129 25 C -0.046 4.046 26 C -0.153 4.153 27 C 0.565 3.435 28 O -0.522 6.522 29 C -0.181 4.181 30 H 0.261 0.739 31 H 0.363 0.637 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.398 0.602 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.074 0.926 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.818 -8.697 13.280 32.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.111 0.889 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.096 0.904 12 C -0.205 4.205 13 C 0.018 3.982 14 H 0.126 0.874 15 N -0.366 5.366 16 C 0.272 3.728 17 O -0.402 6.402 18 C -0.007 4.007 19 N -0.331 5.331 20 C 0.020 3.980 21 C -0.079 4.079 22 C -0.122 4.122 23 C -0.107 4.107 24 C -0.147 4.147 25 C -0.065 4.065 26 C -0.157 4.157 27 C 0.355 3.645 28 O -0.399 6.399 29 C -0.224 4.224 30 H 0.071 0.929 31 H 0.196 0.804 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.232 0.768 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.092 0.908 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 27.397 -7.832 13.014 31.326 hybrid contribution 0.587 0.876 -0.119 1.062 sum 27.984 -6.955 12.896 31.588 Atomic orbital electron populations 1.69691 1.05092 1.25985 1.57013 1.24667 0.95250 0.97251 1.01638 0.86603 0.79430 0.84970 0.77916 1.20917 1.21542 1.20160 1.19080 0.80277 0.94861 1.43651 0.88940 1.42556 1.04096 1.01575 1.88744 1.20890 0.89730 0.90250 0.92683 0.90426 1.23910 0.99042 1.01853 0.95656 1.22671 0.80616 0.98709 0.96161 0.87406 1.46069 1.21564 1.30220 1.38795 1.21133 0.86056 0.85220 0.80366 1.90752 1.73132 1.24518 1.51820 1.21204 0.92654 0.95069 0.91812 1.47296 1.45057 1.34482 1.06265 1.20500 1.00519 0.97956 0.79000 1.20453 0.96793 0.96697 0.94002 1.20284 0.99252 0.98577 0.94049 1.21337 0.95181 0.94285 0.99855 1.21147 1.00855 1.00491 0.92166 1.20892 0.94565 0.94303 0.96725 1.20393 1.01470 0.99488 0.94302 1.18232 0.78473 0.79266 0.88563 1.90784 1.59072 1.60977 1.29021 1.24305 0.96725 0.99190 1.02130 0.92938 0.80373 0.90926 0.89758 0.76808 0.86601 0.86773 0.88160 0.88437 0.84991 0.84908 0.84936 0.84991 0.90794 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.97 55.49 0.78 -28.53 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 22.65 27.74 -169.99 -4.71 17.93 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 7 C -0.25 -7.01 10.45 -15.06 -0.16 -7.17 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.73 -17.27 5.11 -52.55 -0.27 -17.53 16 10 C 0.18 3.27 4.56 -67.02 -0.31 2.96 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.16 -2.40 7.58 -25.92 -0.20 -2.60 16 13 C 0.12 1.89 4.09 -67.11 -0.27 1.62 16 14 H 0.11 2.07 7.50 -51.93 -0.39 1.68 16 15 N -0.72 -8.43 5.36 -53.01 -0.28 -8.71 16 16 C 0.49 6.56 7.90 -10.98 -0.09 6.48 16 17 O -0.53 -9.87 16.05 5.56 0.09 -9.78 16 18 C 0.12 1.08 6.54 -5.19 -0.03 1.04 16 19 N -0.60 -6.69 2.45 -177.51 -0.44 -7.12 16 20 C 0.14 1.18 7.38 -5.00 -0.04 1.14 16 21 C -0.08 -0.71 6.38 -104.25 -0.67 -1.38 16 22 C -0.10 -0.71 10.03 -39.77 -0.40 -1.11 16 23 C -0.09 -0.55 10.05 -39.44 -0.40 -0.95 16 24 C -0.13 -0.91 10.02 -39.64 -0.40 -1.31 16 25 C -0.05 -0.45 10.10 -39.17 -0.40 -0.84 16 26 C -0.15 -1.78 6.26 -105.00 -0.66 -2.44 16 27 C 0.57 7.96 7.97 -12.63 -0.10 7.86 16 28 O -0.52 -9.13 17.71 5.32 0.09 -9.04 16 29 C -0.18 -2.97 7.69 -25.82 -0.20 -3.16 16 30 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 31 H 0.36 8.65 5.76 -40.82 -0.24 8.41 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 34 H 0.40 3.11 8.71 -40.82 -0.36 2.75 16 35 H 0.12 0.96 8.00 -51.93 -0.42 0.54 16 36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 42 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -38.94 375.27 -9.54 -48.49 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.06 Total: 8.35 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -4.40 Total: 0.30 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.21 Total: -61.90 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.18 Total: -18.82 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.94 -9.54 -48.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020945733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.228 kcal (2) G-P(sol) polarization free energy of solvation -38.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds