Wall clock time and date at job start Tue Mar 31 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99349 * 2 1 4 4 H 1.48496 * 109.47278 * 269.99685 * 3 2 1 5 5 H 1.48502 * 109.47254 * 30.00045 * 3 2 1 6 6 H 1.48501 * 109.46951 * 149.99777 * 3 2 1 7 7 C 1.38809 * 120.00485 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00177 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99929 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00243 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.85061 * 23.80177 * 10 9 7 12 12 C 1.53784 * 113.61717 * 154.99483 * 10 9 7 13 13 C 1.53784 * 87.07861 * 89.20370 * 12 10 9 14 14 H 1.09005 * 113.61209 * 270.80293 * 13 12 10 15 15 N 1.46500 * 113.61484 * 139.98038 * 13 12 10 16 16 C 1.34781 * 119.99628 * 156.52940 * 15 13 12 17 17 O 1.21281 * 120.00231 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99771 * 180.02562 * 16 15 13 19 19 N 1.46498 * 109.47276 * 179.97438 * 18 16 15 20 20 C 1.46732 * 125.62366 * 89.99535 * 19 18 16 21 21 C 1.50832 * 106.30266 * 179.97438 * 20 19 18 22 22 C 1.37479 * 133.32989 * 179.97438 * 21 20 19 23 23 C 1.38471 * 119.99285 * 180.02562 * 22 21 20 24 24 C 1.38381 * 120.18836 * 0.03416 * 23 22 21 25 25 C 1.37942 * 120.32236 * 0.02562 * 24 23 22 26 26 C 1.39620 * 119.82710 * 359.97438 * 25 24 23 27 27 C 1.34416 * 125.62177 * 269.97448 * 19 18 16 28 28 O 1.21552 * 124.85715 * 0.04068 * 27 19 18 29 29 C 1.53784 * 87.17587 * 25.38977 * 13 12 10 30 30 H 0.96990 * 120.00625 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.08991 * 113.61315 * 334.65635 * 12 10 9 33 33 H 1.09000 * 113.61472 * 203.74823 * 12 10 9 34 34 H 0.96989 * 120.00146 * 336.52700 * 15 13 12 35 35 H 1.09000 * 109.47166 * 59.99717 * 18 16 15 36 36 H 1.09004 * 109.46686 * 299.99798 * 18 16 15 37 37 H 1.09002 * 110.10053 * 299.17953 * 20 19 18 38 38 H 1.08996 * 110.09914 * 60.72612 * 20 19 18 39 39 H 1.07998 * 119.98080 * 0.11722 * 22 21 20 40 40 H 1.08000 * 119.90614 * 180.02562 * 23 22 21 41 41 H 1.08004 * 119.83689 * 180.02562 * 24 23 22 42 42 H 1.08004 * 120.08405 * 180.02562 * 25 24 23 43 43 H 1.09000 * 113.61352 * 89.15717 * 29 13 12 44 44 H 1.08995 * 113.61713 * 220.06391 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4705 -2.1374 0.0005 9 7 3.3797 -1.2019 0.0011 10 6 4.1124 -2.4705 0.0011 11 1 3.5284 -3.2966 -0.4047 12 6 5.5265 -2.3653 -0.5940 13 6 6.0130 -2.0255 0.8248 14 1 5.9893 -0.9594 1.0508 15 7 7.2902 -2.6528 1.1732 16 6 8.0663 -2.1128 2.1338 17 8 7.7075 -1.1073 2.7093 18 6 9.3804 -2.7577 2.4918 19 7 10.0296 -1.9861 3.5546 20 6 9.8572 -2.2030 4.9955 21 6 10.7190 -1.1747 5.6846 22 6 10.9681 -0.8846 7.0051 23 6 11.8302 0.1471 7.3365 24 6 12.4423 0.8891 6.3417 25 6 12.1989 0.6078 5.0134 26 6 11.3309 -0.4309 4.6712 27 6 10.8817 -0.9630 3.3704 28 8 11.2309 -0.5361 2.2873 29 6 4.7870 -2.7931 1.3469 30 1 -0.4850 0.8399 -0.0004 31 1 3.8647 -0.3618 0.0007 32 1 5.6419 -1.5457 -1.3031 33 1 5.9124 -3.3117 -0.9728 34 1 7.5773 -3.4567 0.7128 35 1 10.0255 -2.7799 1.6135 36 1 9.2029 -3.7759 2.8381 37 1 8.8125 -2.0624 5.2731 38 1 10.1840 -3.2073 5.2649 39 1 10.4925 -1.4626 7.7836 40 1 12.0252 0.3735 8.3744 41 1 13.1140 1.6923 6.6066 42 1 12.6791 1.1891 4.2401 43 1 4.9702 -3.8567 1.4995 44 1 4.3062 -2.3184 2.2021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020945733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:38 Heat of formation + Delta-G solvation = -10.264110 kcal Electronic energy + Delta-G solvation = -26913.014675 eV Core-core repulsion = 23023.883386 eV Total energy + Delta-G solvation = -3889.131289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28195 -41.05530 -39.58624 -39.01344 -37.15118 -35.83816 -34.39028 -33.12222 -32.27124 -32.08722 -29.12905 -27.74289 -26.56219 -26.21268 -24.65041 -23.72188 -22.69428 -21.91496 -21.01786 -20.48424 -19.65885 -18.44423 -18.09567 -18.06242 -17.41307 -16.85648 -16.67144 -16.44902 -16.27661 -16.03653 -15.56076 -15.21536 -14.98769 -14.78898 -14.70390 -14.63513 -14.45252 -14.08580 -13.89461 -13.76825 -13.38664 -13.35991 -13.09182 -12.92930 -12.79247 -12.54967 -12.28127 -12.06093 -11.88871 -11.81665 -11.43480 -11.27413 -11.11363 -10.96180 -10.21045 -10.03857 -9.93594 -9.69307 -9.34886 -8.07969 -5.40674 -0.26634 0.31368 1.32405 1.34324 1.40171 1.43914 1.52879 1.75552 2.30116 2.41565 2.79199 3.06520 3.22139 3.36190 3.45913 3.62658 3.75026 3.80644 3.88595 4.08169 4.15053 4.20506 4.22574 4.23856 4.31526 4.41088 4.48446 4.49856 4.74466 4.75580 4.82047 4.94753 4.96855 5.05608 5.08544 5.18902 5.25678 5.34471 5.41418 5.47013 5.59020 5.75857 5.76838 5.88918 6.18116 6.53540 6.91459 7.02120 7.24474 7.79720 7.95249 9.13257 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.002439 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.116675 B =11478.291183 C =12220.456556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.059 4.059 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.740 5.740 10 C 0.151 3.849 11 H 0.080 0.920 12 C -0.138 4.138 13 C 0.126 3.874 14 H 0.065 0.935 15 N -0.696 5.696 16 C 0.483 3.517 17 O -0.588 6.588 18 C 0.120 3.880 19 N -0.599 5.599 20 C 0.140 3.860 21 C -0.082 4.082 22 C -0.103 4.103 23 C -0.079 4.079 24 C -0.129 4.129 25 C -0.067 4.067 26 C -0.196 4.196 27 C 0.548 3.452 28 O -0.578 6.578 29 C -0.166 4.166 30 H 0.258 0.742 31 H 0.361 0.639 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.423 0.577 35 H 0.127 0.873 36 H 0.170 0.830 37 H 0.097 0.903 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.158 0.842 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.436 -10.854 15.002 35.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.251 4.251 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.359 4.359 8 H 0.086 0.914 9 N -0.380 5.380 10 C 0.041 3.959 11 H 0.099 0.901 12 C -0.177 4.177 13 C 0.021 3.979 14 H 0.084 0.916 15 N -0.349 5.349 16 C 0.270 3.730 17 O -0.468 6.468 18 C -0.004 4.004 19 N -0.329 5.329 20 C 0.018 3.982 21 C -0.084 4.084 22 C -0.121 4.121 23 C -0.097 4.097 24 C -0.147 4.147 25 C -0.086 4.086 26 C -0.199 4.199 27 C 0.339 3.661 28 O -0.460 6.460 29 C -0.208 4.208 30 H 0.067 0.933 31 H 0.194 0.806 32 H 0.083 0.917 33 H 0.150 0.850 34 H 0.261 0.739 35 H 0.144 0.856 36 H 0.188 0.812 37 H 0.115 0.885 38 H 0.158 0.842 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.175 0.825 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 30.072 -10.096 14.737 34.977 hybrid contribution -0.202 1.428 -0.564 1.548 sum 29.869 -8.668 14.174 34.179 Atomic orbital electron populations 1.69841 1.06751 1.26591 1.59737 1.25379 0.96029 1.00702 1.02945 0.85564 0.78203 0.80738 0.78165 1.20029 1.22039 1.19360 1.19102 0.82316 0.93703 1.40822 0.91434 1.42606 1.02651 1.03644 1.89139 1.21270 0.91504 0.88159 0.94978 0.90144 1.23774 0.95314 1.03980 0.94673 1.22238 0.82159 0.96664 0.96857 0.91649 1.45798 1.19980 1.30662 1.38413 1.21973 0.87178 0.84391 0.79506 1.90736 1.74714 1.27295 1.54035 1.21496 0.89917 0.96673 0.92353 1.47543 1.43774 1.33522 1.08027 1.20775 1.00247 0.99938 0.77204 1.20725 0.96624 0.96520 0.94504 1.20728 0.98900 0.98731 0.93711 1.21835 0.93572 0.93016 1.01305 1.21478 1.01004 1.01113 0.91100 1.21068 0.95034 0.94446 0.98073 1.20488 1.03899 1.01568 0.93946 1.18847 0.78772 0.79650 0.88829 1.90721 1.61458 1.62867 1.30907 1.24168 0.96225 1.01241 0.99184 0.93261 0.80574 0.91669 0.84967 0.73865 0.85563 0.81230 0.88504 0.84158 0.81800 0.81362 0.82463 0.85947 0.86919 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.51 13.97 21.65 0.30 -63.21 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 3 Si 0.94 48.02 27.74 68.60 1.90 49.92 16 4 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 6 H -0.27 -13.09 6.52 99.48 0.65 -12.44 16 7 C -0.23 -13.13 10.45 84.03 0.88 -12.25 16 8 H 0.07 4.15 8.06 -2.92 -0.02 4.12 16 9 N -0.74 -35.14 5.11 -320.17 -1.64 -36.78 16 10 C 0.15 5.38 4.56 45.58 0.21 5.59 16 11 H 0.08 2.82 8.10 -2.38 -0.02 2.80 16 12 C -0.14 -3.64 7.58 31.12 0.24 -3.40 16 13 C 0.13 3.73 4.09 45.52 0.19 3.92 16 14 H 0.07 2.55 7.50 -2.38 -0.02 2.54 16 15 N -0.70 -14.53 5.36 -440.01 -2.36 -16.89 16 16 C 0.48 12.33 7.90 87.66 0.69 13.02 16 17 O -0.59 -22.43 16.05 -3.03 -0.05 -22.48 16 18 C 0.12 1.89 6.54 85.63 0.56 2.45 16 19 N -0.60 -12.73 2.45 -834.00 -2.05 -14.78 16 20 C 0.14 2.01 7.38 85.63 0.63 2.64 16 21 C -0.08 -1.38 6.38 -19.62 -0.13 -1.51 16 22 C -0.10 -1.09 10.03 22.15 0.22 -0.87 16 23 C -0.08 -0.73 10.05 22.36 0.22 -0.51 16 24 C -0.13 -1.63 10.02 22.23 0.22 -1.41 16 25 C -0.07 -1.35 10.10 22.53 0.23 -1.12 16 26 C -0.20 -4.65 6.26 -20.11 -0.13 -4.78 16 27 C 0.55 16.00 7.97 86.75 0.69 16.69 16 28 O -0.58 -21.58 17.71 -3.88 -0.07 -21.65 16 29 C -0.17 -5.18 7.69 31.18 0.24 -4.94 16 30 H 0.26 16.02 8.31 -92.72 -0.77 15.24 16 31 H 0.36 17.27 5.76 -92.71 -0.53 16.74 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.13 2.26 8.11 -2.39 -0.02 2.24 16 34 H 0.42 4.66 8.71 -92.72 -0.81 3.85 16 35 H 0.13 1.79 8.00 -2.39 -0.02 1.78 16 36 H 0.17 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 40 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 41 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 42 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -93.37 375.27 1.12 -92.25 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.36 Total: 23.17 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.44 Total: 10.43 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -5.74 Total: -131.65 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.12 Total: -44.13 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.90 Total: 49.92 kcal Total: -93.37 1.12 -92.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020945733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.984 kcal (2) G-P(sol) polarization free energy of solvation -93.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds