Wall clock time and date at job start Tue Mar 31 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 119.99904 * 2 1 4 4 H 1.48495 * 109.46840 * 269.99897 * 3 2 1 5 5 H 1.48497 * 109.46946 * 29.99691 * 3 2 1 6 6 H 1.48501 * 109.46854 * 149.99662 * 3 2 1 7 7 C 1.38813 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00001 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99913 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.85122 * 315.03062 * 10 9 7 12 12 C 1.53780 * 113.61141 * 86.22591 * 10 9 7 13 13 C 1.53781 * 87.07931 * 89.11688 * 12 10 9 14 14 H 1.09006 * 113.61767 * 140.06573 * 13 12 10 15 15 N 1.46501 * 113.61416 * 270.88146 * 13 12 10 16 16 C 1.34777 * 119.99875 * 201.64927 * 15 13 12 17 17 O 1.21279 * 120.00464 * 0.02562 * 16 15 13 18 18 C 1.50707 * 119.99714 * 179.97438 * 16 15 13 19 19 H 1.08997 * 109.35733 * 60.26616 * 18 16 15 20 20 C 1.52658 * 109.36893 * 300.65287 * 18 16 15 21 21 N 1.46136 * 110.92240 * 290.48257 * 20 18 16 22 22 C 1.34670 * 121.02450 * 319.86206 * 21 20 18 23 23 O 1.21545 * 120.31457 * 187.49274 * 22 21 20 24 24 C 1.47823 * 119.37494 * 7.49731 * 22 21 20 25 25 C 1.39235 * 121.09228 * 192.81397 * 24 22 21 26 26 C 1.38066 * 119.66157 * 179.78883 * 25 24 22 27 27 C 1.38383 * 120.14879 * 359.97438 * 26 25 24 28 28 C 1.38417 * 120.40562 * 0.40917 * 27 26 25 29 29 C 1.37836 * 119.98392 * 359.95383 * 28 27 26 30 30 C 1.53779 * 87.08508 * 25.43176 * 13 12 10 31 31 H 0.96996 * 120.00403 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99964 * 359.97438 * 9 7 2 33 33 H 1.09002 * 113.61851 * 334.56916 * 12 10 9 34 34 H 1.09001 * 113.61129 * 203.66310 * 12 10 9 35 35 H 0.96996 * 119.99785 * 21.65055 * 15 13 12 36 36 H 1.09005 * 109.18622 * 50.84964 * 20 18 16 37 37 H 1.08995 * 109.18796 * 170.15435 * 20 18 16 38 38 H 0.96998 * 119.49301 * 139.86654 * 21 20 18 39 39 H 1.08000 * 120.17348 * 359.80570 * 25 24 22 40 40 H 1.07998 * 119.92443 * 179.97438 * 26 25 24 41 41 H 1.08003 * 119.79909 * 180.38363 * 27 26 25 42 42 H 1.07999 * 120.00678 * 179.97438 * 28 27 26 43 43 H 1.08996 * 113.61680 * 89.11254 * 30 13 12 44 44 H 1.08994 * 113.61663 * 220.02249 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.8853 -3.6680 -0.7093 12 6 2.4465 -4.1438 1.4065 13 6 1.0894 -4.8661 1.4454 14 1 1.1337 -5.8545 1.9030 15 7 0.0009 -4.0418 1.9763 16 6 -1.1056 -4.6270 2.4760 17 8 -1.2000 -5.8361 2.4865 18 6 -2.2251 -3.7790 3.0227 19 1 -2.6062 -3.1312 2.2333 20 6 -1.6962 -2.9195 4.1681 21 7 -1.3766 -3.7418 5.3331 22 6 -2.1720 -4.7648 5.6999 23 8 -1.9715 -5.3539 6.7440 24 6 -3.2912 -5.1644 4.8208 25 6 -4.2875 -6.0261 5.2719 26 6 -5.3218 -6.3765 4.4270 27 6 -5.3679 -5.8732 3.1388 28 6 -4.3756 -5.0225 2.6832 29 6 -3.3339 -4.6713 3.5147 30 6 1.1485 -4.8933 -0.0910 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.5347 -3.3405 2.1381 34 1 3.3014 -4.8200 1.4137 35 1 0.0765 -3.0748 1.9682 36 1 -0.7967 -2.3988 3.8395 37 1 -2.4536 -2.1862 4.4449 38 1 -0.5793 -3.5479 5.8503 39 1 -4.2517 -6.4182 6.2775 40 1 -6.0966 -7.0449 4.7724 41 1 -6.1828 -6.1461 2.4847 42 1 -4.4177 -4.6338 1.6764 43 1 1.6486 -5.7743 -0.4932 44 1 0.1890 -4.6951 -0.5684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022208160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:48 Heat of formation + Delta-G solvation = -7.641027 kcal Electronic energy + Delta-G solvation = -28535.887971 eV Core-core repulsion = 24646.870427 eV Total energy + Delta-G solvation = -3889.017544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.13261 -39.63193 -38.29166 -37.87954 -35.94810 -33.73988 -32.72549 -32.17325 -31.12726 -30.04951 -29.17013 -25.32917 -24.92336 -24.35032 -24.04278 -23.01726 -21.77053 -20.64954 -19.32804 -18.74914 -17.64264 -17.34814 -17.30004 -16.82635 -15.99913 -15.65138 -15.21933 -15.07387 -14.77279 -14.56420 -14.46741 -14.23337 -13.96796 -13.73007 -13.36965 -13.26858 -13.10351 -12.67516 -12.46250 -12.32284 -11.97255 -11.80356 -11.55304 -11.49876 -11.15220 -11.00713 -10.89948 -10.42053 -10.29661 -10.00457 -9.90323 -9.71007 -9.63676 -9.24890 -9.04262 -9.02414 -8.82477 -8.62918 -7.16061 -5.96936 -3.26261 0.76704 1.23996 2.75941 2.81706 3.12981 3.31860 3.37204 3.39198 3.39731 3.84915 4.27625 4.42818 4.43481 4.52214 4.79627 4.88950 4.91858 5.06055 5.13835 5.19884 5.21212 5.30926 5.36104 5.41708 5.43709 5.54164 5.67153 5.70859 5.84976 5.88448 6.07703 6.17243 6.23865 6.27573 6.29843 6.33203 6.52137 6.58323 6.68997 6.77114 6.81897 7.01445 7.08835 7.57671 7.85948 8.12962 8.22727 8.47581 9.34138 9.88401 10.23978 11.25275 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.003541 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.981279 B = 7905.582689 C = 8299.889119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.709 5.709 10 C 0.162 3.838 11 H 0.053 0.947 12 C -0.178 4.178 13 C 0.127 3.873 14 H 0.087 0.913 15 N -0.697 5.697 16 C 0.522 3.478 17 O -0.539 6.539 18 C -0.094 4.094 19 H 0.133 0.867 20 C 0.120 3.880 21 N -0.723 5.723 22 C 0.570 3.430 23 O -0.540 6.540 24 C -0.124 4.124 25 C -0.060 4.060 26 C -0.131 4.131 27 C -0.091 4.091 28 C -0.112 4.112 29 C -0.021 4.021 30 C -0.163 4.163 31 H 0.257 0.743 32 H 0.384 0.616 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.407 0.593 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.938 -8.120 6.245 12.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.051 3.949 11 H 0.071 0.929 12 C -0.219 4.219 13 C 0.022 3.978 14 H 0.105 0.895 15 N -0.350 5.350 16 C 0.307 3.693 17 O -0.415 6.415 18 C -0.116 4.116 19 H 0.150 0.850 20 C -0.005 4.005 21 N -0.376 5.376 22 C 0.358 3.642 23 O -0.418 6.418 24 C -0.127 4.127 25 C -0.078 4.078 26 C -0.149 4.149 27 C -0.110 4.110 28 C -0.130 4.130 29 C -0.022 4.022 30 C -0.203 4.203 31 H 0.067 0.933 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.253 0.747 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.244 0.756 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.105 0.895 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.936 -9.143 6.670 13.822 hybrid contribution 0.560 1.572 -0.110 1.672 sum -7.376 -7.571 6.559 12.440 Atomic orbital electron populations 1.69623 1.05044 1.25960 1.57508 1.24713 0.95542 0.97663 1.02590 0.86191 0.78719 0.83629 0.77638 1.21677 1.21727 1.20728 1.19246 0.91256 0.83749 1.43044 0.90946 1.42244 1.05521 0.99474 1.87866 1.21214 0.94072 0.85950 0.93679 0.92925 1.24057 0.94890 1.00211 1.02765 1.21713 0.87187 0.94610 0.94296 0.89451 1.45870 1.16783 1.11443 1.60931 1.20124 0.83000 0.88459 0.77757 1.90699 1.79885 1.14280 1.56674 1.20702 0.93724 0.97392 0.99816 0.84975 1.21358 1.02907 0.92064 0.84169 1.45627 1.28238 1.32817 1.30900 1.18213 0.82041 0.79252 0.84698 1.90776 1.72354 1.54414 1.24305 1.19617 0.97179 1.01552 0.94398 1.21112 0.92311 0.94213 1.00207 1.21137 0.98773 1.00874 0.94132 1.21316 0.98135 0.95754 0.95767 1.20952 0.94029 0.98518 0.99542 1.19403 0.94081 0.95760 0.92926 1.23713 1.01136 0.99303 0.96104 0.93327 0.78138 0.90682 0.90109 0.74653 0.88039 0.89842 0.75611 0.84831 0.85380 0.85470 0.85185 0.89517 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.71 13.06 55.49 0.72 -23.98 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.24 -5.99 9.99 -15.06 -0.15 -6.14 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.71 -15.50 4.41 -52.63 -0.23 -15.73 16 10 C 0.16 2.92 4.54 -67.11 -0.30 2.61 16 11 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.18 -2.81 7.61 -25.92 -0.20 -3.01 16 13 C 0.13 2.02 4.28 -67.12 -0.29 1.74 16 14 H 0.09 1.43 7.55 -51.93 -0.39 1.04 16 15 N -0.70 -10.96 4.76 -53.01 -0.25 -11.21 16 16 C 0.52 8.29 7.02 -10.98 -0.08 8.21 16 17 O -0.54 -10.34 15.67 5.56 0.09 -10.25 16 18 C -0.09 -1.22 2.72 -93.15 -0.25 -1.47 16 19 H 0.13 1.48 8.08 -51.93 -0.42 1.06 16 20 C 0.12 1.36 6.37 -4.41 -0.03 1.33 16 21 N -0.72 -9.25 5.43 -61.72 -0.34 -9.59 16 22 C 0.57 8.87 7.81 -12.39 -0.10 8.77 16 23 O -0.54 -9.87 17.37 5.33 0.09 -9.78 16 24 C -0.12 -1.80 5.80 -105.07 -0.61 -2.41 16 25 C -0.06 -0.76 9.63 -39.27 -0.38 -1.14 16 26 C -0.13 -1.37 10.04 -39.59 -0.40 -1.77 16 27 C -0.09 -0.94 10.04 -39.46 -0.40 -1.34 16 28 C -0.11 -1.33 9.72 -39.66 -0.39 -1.71 16 29 C -0.02 -0.28 4.17 -104.29 -0.44 -0.71 16 30 C -0.16 -2.59 7.57 -25.92 -0.20 -2.78 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.38 8.77 6.97 -40.82 -0.28 8.48 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.41 6.80 6.45 -40.82 -0.26 6.54 16 36 H 0.10 1.10 7.25 -51.93 -0.38 0.72 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.41 4.68 8.92 -40.82 -0.36 4.31 16 39 H 0.13 1.62 7.79 -52.49 -0.41 1.21 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -31.44 366.54 -9.56 -41.00 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -5.86 Total: 18.66 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -4.29 Total: -0.15 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.10 Total: -60.52 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.18 Total: -20.03 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.44 -9.56 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022208160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.361 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds