Wall clock time and date at job start Tue Mar 31 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47115 * 270.00336 * 3 2 1 5 5 H 1.48499 * 109.46882 * 29.99814 * 3 2 1 6 6 H 1.48499 * 109.47353 * 149.99743 * 3 2 1 7 7 C 1.38811 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00476 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99984 * 179.97438 * 7 2 1 10 10 C 1.46507 * 120.00257 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.84634 * 23.80618 * 10 9 7 12 12 C 1.53773 * 113.61435 * 155.00259 * 10 9 7 13 13 C 1.53786 * 87.08202 * 89.11634 * 12 10 9 14 14 H 1.09004 * 113.61143 * 140.06245 * 13 12 10 15 15 N 1.46500 * 113.61215 * 270.88130 * 13 12 10 16 16 C 1.34781 * 119.99833 * 203.46757 * 15 13 12 17 17 O 1.21281 * 119.99776 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99947 * 180.02562 * 16 15 13 19 19 H 1.08998 * 109.24716 * 299.65842 * 18 16 15 20 20 C 1.52647 * 109.35648 * 59.31849 * 18 16 15 21 21 N 1.46136 * 110.97981 * 69.69178 * 20 18 16 22 22 C 1.34687 * 120.99721 * 40.41674 * 21 20 18 23 23 O 1.21547 * 120.35870 * 172.05372 * 22 21 20 24 24 C 1.47826 * 119.28476 * 352.03068 * 22 21 20 25 25 C 1.39316 * 120.93474 * 166.56477 * 24 22 21 26 26 C 1.38062 * 119.61302 * 180.76941 * 25 24 22 27 27 C 1.38382 * 120.16758 * 0.02562 * 26 25 24 28 28 C 1.38411 * 120.41431 * 359.75910 * 27 26 25 29 29 C 1.37845 * 119.97365 * 359.97438 * 28 27 26 30 30 C 1.53774 * 87.17089 * 25.47387 * 13 12 10 31 31 H 0.97002 * 120.00062 * 0.02562 * 1 2 3 32 32 H 0.97005 * 120.00183 * 0.02562 * 9 7 2 33 33 H 1.09003 * 113.61954 * 334.56932 * 12 10 9 34 34 H 1.08997 * 113.61359 * 203.66604 * 12 10 9 35 35 H 0.96993 * 120.00018 * 23.47530 * 15 13 12 36 36 H 1.09000 * 109.17475 * 190.07194 * 20 18 16 37 37 H 1.08992 * 109.18124 * 309.35403 * 20 18 16 38 38 H 0.97000 * 119.49984 * 220.41985 * 21 20 18 39 39 H 1.08006 * 120.19113 * 0.74307 * 25 24 22 40 40 H 1.07994 * 119.91296 * 179.97438 * 26 25 24 41 41 H 1.07995 * 119.78737 * 179.73465 * 27 26 25 42 42 H 1.08006 * 120.01417 * 180.02562 * 28 27 26 43 43 H 1.09003 * 113.61759 * 89.07028 * 30 13 12 44 44 H 1.08997 * 113.61841 * 219.97753 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 1 3.5276 -3.2971 -0.4050 12 6 5.5257 -2.3661 -0.5960 13 6 6.0129 -2.0236 0.8219 14 1 6.9643 -2.4883 1.0808 15 7 5.9789 -0.5904 1.1238 16 6 6.7786 -0.0848 2.0838 17 8 7.5266 -0.8163 2.6973 18 6 6.7432 1.3893 2.3947 19 1 7.0185 1.9515 1.5024 20 6 5.3322 1.7819 2.8250 21 7 5.0085 1.2185 4.1339 22 6 5.9222 1.1928 5.1232 23 8 5.6022 0.8561 6.2464 24 6 7.3186 1.5779 4.8280 25 6 8.2236 1.8331 5.8559 26 6 9.5169 2.2064 5.5491 27 6 9.9112 2.3266 4.2281 28 6 9.0166 2.0697 3.2037 29 6 7.7241 1.6910 3.4969 30 6 4.7888 -2.7928 1.3460 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 -0.0004 33 1 5.6405 -1.5476 -1.3067 34 1 5.9118 -3.3129 -0.9734 35 1 5.3809 -0.0055 0.6330 36 1 5.2628 2.8685 2.8758 37 1 4.6177 1.4116 2.0900 38 1 4.1223 0.8577 4.2927 39 1 7.9152 1.7399 6.8868 40 1 10.2224 2.4058 6.3421 41 1 10.9232 2.6232 3.9951 42 1 9.3314 2.1652 2.1749 43 1 4.9737 -3.8561 1.4984 44 1 4.3088 -2.3186 2.2020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022208161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:52 Heat of formation + Delta-G solvation = 2.706820 kcal Electronic energy + Delta-G solvation = -28960.955402 eV Core-core repulsion = 25072.386574 eV Total energy + Delta-G solvation = -3888.568827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24974 -39.81039 -38.36790 -38.01824 -36.02825 -33.87380 -32.89541 -32.27178 -31.20879 -30.67962 -29.34049 -25.32363 -25.17447 -24.41782 -24.10362 -22.94603 -21.80792 -20.74392 -19.75094 -19.07073 -17.82434 -17.58440 -17.35491 -17.00586 -16.08032 -15.78999 -15.40454 -15.07933 -14.93768 -14.64545 -14.53810 -14.40075 -14.07077 -13.80970 -13.60817 -13.35103 -13.11045 -12.68227 -12.57966 -12.44007 -12.28582 -12.11460 -11.97291 -11.66405 -11.29537 -11.10411 -11.03742 -10.45416 -10.35064 -9.98832 -9.96582 -9.84176 -9.72725 -9.26259 -9.12000 -9.09040 -8.92819 -8.82938 -7.49304 -5.94714 -3.32595 0.68482 1.12775 2.57300 2.74393 2.90640 3.09415 3.16506 3.20288 3.25555 3.73604 4.13456 4.34653 4.34998 4.39152 4.62462 4.67625 4.81218 4.84677 4.98899 5.03677 5.12384 5.16310 5.19500 5.28116 5.32544 5.42669 5.56011 5.59962 5.66689 5.75455 5.93936 6.02569 6.07908 6.09481 6.16135 6.21999 6.36147 6.51998 6.59349 6.63485 6.79213 6.85082 7.11189 7.53196 7.81020 8.13817 8.22320 8.24147 8.98471 9.69849 9.87950 11.23269 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.004400 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.745158 B = 6362.457246 C = 7178.317693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.094 0.906 9 N -0.726 5.726 10 C 0.170 3.830 11 H 0.076 0.924 12 C -0.167 4.167 13 C 0.121 3.879 14 H 0.094 0.906 15 N -0.703 5.703 16 C 0.523 3.477 17 O -0.528 6.528 18 C -0.095 4.095 19 H 0.126 0.874 20 C 0.106 3.894 21 N -0.720 5.720 22 C 0.567 3.433 23 O -0.536 6.536 24 C -0.120 4.120 25 C -0.058 4.058 26 C -0.129 4.129 27 C -0.093 4.093 28 C -0.114 4.114 29 C -0.024 4.024 30 C -0.184 4.184 31 H 0.261 0.739 32 H 0.353 0.647 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.399 0.601 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.412 0.588 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.082 0.918 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.828 5.713 3.087 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.191 4.191 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.377 4.377 8 H 0.112 0.888 9 N -0.368 5.368 10 C 0.058 3.942 11 H 0.094 0.906 12 C -0.206 4.206 13 C 0.016 3.984 14 H 0.112 0.888 15 N -0.356 5.356 16 C 0.308 3.692 17 O -0.404 6.404 18 C -0.117 4.117 19 H 0.144 0.856 20 C -0.019 4.019 21 N -0.373 5.373 22 C 0.355 3.645 23 O -0.413 6.413 24 C -0.123 4.123 25 C -0.077 4.077 26 C -0.147 4.147 27 C -0.111 4.111 28 C -0.132 4.132 29 C -0.025 4.025 30 C -0.226 4.226 31 H 0.072 0.928 32 H 0.187 0.813 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.249 0.751 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.100 0.900 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.066 5.044 4.047 20.133 hybrid contribution -0.101 1.367 -0.349 1.414 sum 18.964 6.411 3.699 20.357 Atomic orbital electron populations 1.69680 1.05034 1.25926 1.56798 1.24712 0.95265 0.97107 1.01983 0.86702 0.78369 0.85453 0.77797 1.20854 1.21348 1.20822 1.19125 0.80131 0.95028 1.43435 0.88791 1.42546 1.04014 1.01156 1.89105 1.21217 0.90208 0.89940 0.92819 0.90582 1.23873 0.99174 1.02209 0.95389 1.21864 0.99437 0.80329 0.96777 0.88828 1.45860 1.41944 1.09529 1.38293 1.20126 0.80213 0.89166 0.79723 1.90715 1.39662 1.60484 1.49543 1.20715 0.95950 0.95630 0.99379 0.85610 1.21649 0.94653 0.99698 0.85880 1.45602 1.16431 1.63215 1.12072 1.18213 0.85463 0.76776 0.84026 1.90789 1.81193 1.48161 1.21178 1.19666 0.94285 1.04818 0.93554 1.21176 0.92448 0.94942 0.99168 1.21157 0.95912 1.00847 0.96771 1.21294 0.99389 0.97739 0.92683 1.20886 0.92278 1.00211 0.99790 1.19331 0.94286 0.96685 0.92235 1.24282 0.97170 0.99494 1.01630 0.92825 0.81341 0.91154 0.88619 0.76350 0.89976 0.87478 0.75055 0.84641 0.85271 0.85451 0.85402 0.89977 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.27 13.97 55.49 0.78 -26.49 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -4.91 3.86 56.52 0.22 -4.69 16 7 C -0.25 -6.35 10.45 -15.06 -0.16 -6.51 16 8 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 9 N -0.73 -14.98 4.99 -52.50 -0.26 -15.24 16 10 C 0.17 2.92 4.57 -66.98 -0.31 2.61 16 11 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 12 C -0.17 -2.28 7.58 -25.92 -0.20 -2.47 16 13 C 0.12 1.79 4.30 -67.12 -0.29 1.50 16 14 H 0.09 1.40 7.50 -51.93 -0.39 1.01 16 15 N -0.70 -10.30 4.94 -53.02 -0.26 -10.56 16 16 C 0.52 7.90 7.02 -10.98 -0.08 7.82 16 17 O -0.53 -9.73 15.65 5.56 0.09 -9.65 16 18 C -0.09 -1.15 2.73 -93.16 -0.25 -1.41 16 19 H 0.13 1.09 8.08 -51.93 -0.42 0.67 16 20 C 0.11 1.33 6.36 -4.42 -0.03 1.30 16 21 N -0.72 -10.62 5.44 -61.72 -0.34 -10.96 16 22 C 0.57 9.39 7.81 -12.38 -0.10 9.29 16 23 O -0.54 -10.38 17.37 5.32 0.09 -10.28 16 24 C -0.12 -1.74 5.79 -105.06 -0.61 -2.35 16 25 C -0.06 -0.74 9.63 -39.25 -0.38 -1.12 16 26 C -0.13 -1.28 10.04 -39.59 -0.40 -1.67 16 27 C -0.09 -0.87 10.04 -39.46 -0.40 -1.26 16 28 C -0.11 -1.20 9.72 -39.66 -0.39 -1.58 16 29 C -0.02 -0.31 4.18 -104.31 -0.44 -0.75 16 30 C -0.18 -2.97 7.70 -25.78 -0.20 -3.17 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.35 6.77 3.21 -40.82 -0.13 6.64 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.40 5.74 5.20 -40.82 -0.21 5.53 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.11 1.43 4.80 -51.93 -0.25 1.18 16 38 H 0.41 6.06 8.92 -40.82 -0.36 5.70 16 39 H 0.14 1.64 7.78 -52.48 -0.41 1.23 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -33.52 356.41 -9.27 -42.79 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -5.72 Total: 20.45 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -4.30 Total: 0.28 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.08 Total: -63.25 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.18 Total: -19.93 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.52 -9.27 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022208161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.493 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds