Wall clock time and date at job start Tue Mar 31 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00025 * 2 1 4 4 H 1.48496 * 109.46900 * 269.99613 * 3 2 1 5 5 H 1.48504 * 109.47152 * 29.99541 * 3 2 1 6 6 H 1.48500 * 109.47234 * 149.99580 * 3 2 1 7 7 C 1.38811 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99920 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00391 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00563 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.84278 * 336.19500 * 10 9 7 12 12 C 1.53782 * 113.69164 * 107.46012 * 10 9 7 13 13 C 1.53782 * 87.08001 * 139.99523 * 12 10 9 14 14 H 1.09003 * 113.69162 * 89.12589 * 13 12 10 15 15 N 1.46497 * 113.61701 * 220.02172 * 13 12 10 16 16 C 1.34773 * 120.00005 * 252.50090 * 15 13 12 17 17 O 1.21285 * 119.99800 * 359.97438 * 16 15 13 18 18 C 1.50702 * 120.00250 * 179.97438 * 16 15 13 19 19 H 1.08999 * 109.46204 * 300.02215 * 18 16 15 20 20 C 1.52913 * 109.46099 * 59.99587 * 18 16 15 21 21 C 1.50503 * 109.82672 * 71.46942 * 20 18 16 22 22 O 1.21286 * 119.61497 * 215.15418 * 21 20 18 23 23 N 1.34374 * 120.89435 * 35.19275 * 21 20 18 24 24 C 1.39822 * 120.40785 * 359.17551 * 23 21 20 25 25 C 1.38866 * 120.19298 * 161.47451 * 24 23 21 26 26 C 1.38109 * 119.89016 * 180.02562 * 25 24 23 27 27 C 1.38304 * 120.08909 * 359.97154 * 26 25 24 28 28 C 1.38278 * 120.15104 * 0.04501 * 27 26 25 29 29 C 1.38093 * 120.02444 * 359.95466 * 28 27 26 30 30 C 1.53778 * 113.61586 * 205.00018 * 10 9 7 31 31 H 0.97002 * 120.00544 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99446 * 359.97438 * 9 7 2 33 33 H 1.09000 * 113.61110 * 25.44598 * 12 10 9 34 34 H 1.09000 * 113.61676 * 254.54287 * 12 10 9 35 35 H 0.96994 * 119.99986 * 72.49239 * 15 13 12 36 36 H 1.09002 * 109.39955 * 191.55547 * 20 18 16 37 37 H 1.09003 * 109.40338 * 311.38048 * 20 18 16 38 38 H 0.97005 * 119.81783 * 179.21101 * 23 21 20 39 39 H 1.07996 * 120.05522 * 0.05605 * 25 24 23 40 40 H 1.08004 * 119.95496 * 179.97438 * 26 25 24 41 41 H 1.08000 * 119.91984 * 180.02562 * 27 26 25 42 42 H 1.07998 * 119.98495 * 180.02562 * 28 27 26 43 43 H 1.09000 * 113.61692 * 105.38192 * 30 10 9 44 44 H 1.08999 * 113.61304 * 334.47735 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0656 -3.5638 -0.4049 12 6 2.0010 -4.4032 1.3439 13 6 1.8497 -5.6981 0.5283 14 1 2.7996 -6.1644 0.2665 15 7 0.8905 -6.6448 1.1026 16 6 1.3294 -7.7724 1.6961 17 8 2.5186 -8.0036 1.7543 18 6 0.3427 -8.7459 2.2874 19 1 -0.2379 -8.2480 3.0640 20 6 -0.5978 -9.2474 1.1909 21 6 0.1457 -10.1707 0.2636 22 8 -0.1218 -10.1750 -0.9193 23 7 1.1024 -10.9918 0.7285 24 6 1.4377 -10.9908 2.0859 25 6 2.1221 -12.0661 2.6370 26 6 2.4497 -12.0588 3.9787 27 6 2.0976 -10.9825 4.7726 28 6 1.4158 -9.9105 4.2267 29 6 1.0855 -9.9120 2.8858 30 6 1.2601 -4.8288 -0.5949 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 1.1233 -4.1589 1.9422 34 1 2.9298 -4.3511 1.9121 35 1 -0.0606 -6.4599 1.0558 36 1 -1.4303 -9.7843 1.6456 37 1 -0.9805 -8.3976 0.6256 38 1 1.5639 -11.5887 0.1187 39 1 2.3982 -12.9065 2.0174 40 1 2.9816 -12.8948 4.4085 41 1 2.3555 -10.9795 5.8213 42 1 1.1425 -9.0712 4.8490 43 1 1.5906 -5.1203 -1.5919 44 1 0.1798 -4.7009 -0.5266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022517554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:05 Heat of formation + Delta-G solvation = -13.403489 kcal Electronic energy + Delta-G solvation = -27471.790546 eV Core-core repulsion = 23582.523123 eV Total energy + Delta-G solvation = -3889.267423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66606 -39.67236 -38.95786 -37.93684 -35.52495 -34.47198 -34.04574 -32.63103 -30.50752 -29.83736 -29.69565 -26.09808 -25.13973 -24.42845 -23.32989 -23.01566 -22.24480 -20.82080 -19.71263 -18.98369 -18.29585 -17.66979 -17.24530 -16.95303 -16.44391 -16.11700 -15.64793 -15.13979 -14.77444 -14.71373 -14.52887 -14.51569 -14.04609 -13.93828 -13.52341 -13.12704 -13.03697 -12.87910 -12.79560 -12.46295 -12.10379 -11.93418 -11.66844 -11.51509 -11.26973 -10.99271 -10.93967 -10.65585 -10.51277 -10.37500 -10.35369 -10.06728 -9.81768 -9.62589 -9.16506 -8.92817 -8.79521 -8.35841 -7.00256 -5.81682 -3.10551 0.85405 0.99143 2.22012 2.52133 2.69383 3.10393 3.41667 3.47198 3.48583 3.55415 3.91064 4.09242 4.25385 4.45394 4.56234 4.61813 4.69040 4.90998 4.92734 5.01655 5.06721 5.12353 5.18552 5.21951 5.35826 5.45757 5.46769 5.57826 5.77494 5.84784 5.92395 6.02834 6.10144 6.18808 6.24803 6.29371 6.32632 6.46066 6.52730 6.58453 6.71948 6.83670 7.03474 7.54384 7.64380 7.67536 8.19769 8.36822 9.48247 10.04689 10.39361 11.40721 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.002385 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.213842 B =11738.433234 C =12391.087476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.079 0.921 12 C -0.175 4.175 13 C 0.118 3.882 14 H 0.108 0.892 15 N -0.711 5.711 16 C 0.512 3.488 17 O -0.528 6.528 18 C -0.069 4.069 19 H 0.124 0.876 20 C -0.133 4.133 21 C 0.521 3.479 22 O -0.522 6.522 23 N -0.660 5.660 24 C 0.173 3.827 25 C -0.154 4.154 26 C -0.086 4.086 27 C -0.141 4.141 28 C -0.070 4.070 29 C -0.099 4.099 30 C -0.159 4.159 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.399 0.601 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.412 0.588 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.066 0.934 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -26.722 8.950 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.217 4.217 13 C 0.013 3.987 14 H 0.126 0.874 15 N -0.361 5.361 16 C 0.296 3.704 17 O -0.404 6.404 18 C -0.090 4.090 19 H 0.142 0.858 20 C -0.173 4.173 21 C 0.309 3.691 22 O -0.397 6.397 23 N -0.304 5.304 24 C 0.077 3.923 25 C -0.175 4.175 26 C -0.105 4.105 27 C -0.160 4.160 28 C -0.089 4.089 29 C -0.102 4.102 30 C -0.199 4.199 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.234 0.766 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.250 0.750 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.085 0.915 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.159 -26.536 8.354 27.820 hybrid contribution -0.095 0.750 -0.146 0.770 sum -0.254 -25.785 8.208 27.061 Atomic orbital electron populations 1.69653 1.05148 1.25794 1.57507 1.24764 0.95541 0.97815 1.02752 0.86177 0.78696 0.83690 0.77560 1.21651 1.21751 1.20689 1.19315 0.91148 0.84141 1.42918 0.91001 1.42350 1.05681 0.99747 1.86987 1.21340 0.95487 0.84943 0.92607 0.90263 1.24327 1.01826 0.95032 1.00523 1.22516 0.93188 0.87340 0.95608 0.87422 1.46040 1.10591 1.21230 1.58207 1.20316 0.89491 0.81959 0.78593 1.90720 1.16697 1.75678 1.57289 1.20280 0.95960 0.94319 0.98481 0.85824 1.21763 0.98607 1.00574 0.96332 1.20548 0.79363 0.80184 0.88980 1.90807 1.64833 1.67400 1.16651 1.43528 1.37841 1.41008 1.07996 1.17560 0.97313 0.94456 0.82959 1.20735 1.03022 0.97549 0.96169 1.20973 0.98193 0.98395 0.92893 1.21081 1.00365 0.94280 1.00299 1.20838 0.96510 0.98168 0.93339 1.18863 1.03580 0.93458 0.94270 1.23872 1.01239 0.97238 0.97520 0.93440 0.78084 0.90152 0.92252 0.76624 0.86505 0.86640 0.75019 0.85449 0.85457 0.85578 0.85303 0.91481 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.71 -17.41 5.40 -52.64 -0.28 -17.69 16 10 C 0.17 3.28 4.48 -67.12 -0.30 2.98 16 11 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 12 C -0.17 -3.01 7.68 -25.92 -0.20 -3.21 16 13 C 0.12 1.77 4.24 -67.12 -0.28 1.49 16 14 H 0.11 1.74 7.46 -51.93 -0.39 1.35 16 15 N -0.71 -8.81 5.16 -53.01 -0.27 -9.08 16 16 C 0.51 6.59 6.80 -10.99 -0.07 6.52 16 17 O -0.53 -8.88 15.63 5.55 0.09 -8.79 16 18 C -0.07 -0.61 2.76 -92.99 -0.26 -0.87 16 19 H 0.12 0.75 8.06 -51.93 -0.42 0.33 16 20 C -0.13 -1.08 5.50 -28.02 -0.15 -1.24 16 21 C 0.52 5.94 7.36 -11.26 -0.08 5.86 16 22 O -0.52 -7.79 17.91 5.55 0.10 -7.69 16 23 N -0.66 -6.54 5.36 -10.05 -0.05 -6.60 16 24 C 0.17 1.66 6.50 -83.76 -0.54 1.12 16 25 C -0.15 -1.21 9.93 -39.40 -0.39 -1.60 16 26 C -0.09 -0.60 10.04 -39.60 -0.40 -1.00 16 27 C -0.14 -1.04 10.04 -39.54 -0.40 -1.44 16 28 C -0.07 -0.59 9.69 -39.62 -0.38 -0.97 16 29 C -0.10 -0.95 4.15 -104.47 -0.43 -1.38 16 30 C -0.16 -2.53 7.58 -25.92 -0.20 -2.72 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 32 H 0.39 9.93 7.92 -40.82 -0.32 9.60 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 3.94 8.05 -40.82 -0.33 3.62 16 36 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.12 0.87 7.27 -51.93 -0.38 0.49 16 38 H 0.41 3.50 8.83 -40.82 -0.36 3.14 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -35.54 370.33 -9.45 -44.99 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.97 Total: 12.93 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -4.34 Total: -3.79 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.11 Total: -60.42 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.19 Total: -16.48 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.54 -9.45 -44.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022517554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.584 kcal (2) G-P(sol) polarization free energy of solvation -35.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds