Wall clock time and date at job start Tue Mar 31 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 119.99648 * 2 1 4 4 H 1.48503 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46973 * 299.99432 * 3 2 1 6 6 H 1.48501 * 109.47129 * 59.99635 * 3 2 1 7 7 C 1.38805 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00243 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00233 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.90513 * 314.96920 * 10 9 7 12 12 C 1.53777 * 113.62010 * 86.22405 * 10 9 7 13 13 C 1.53784 * 87.07907 * 89.11750 * 12 10 9 14 14 H 1.09002 * 113.61392 * 139.98964 * 13 12 10 15 15 N 1.46498 * 113.61395 * 270.88565 * 13 12 10 16 16 C 1.34785 * 120.00367 * 201.65526 * 15 13 12 17 17 O 1.21285 * 119.99237 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00233 * 180.02562 * 16 15 13 19 19 C 1.52998 * 109.46844 * 179.97438 * 18 16 15 20 20 H 1.09006 * 110.08024 * 306.55859 * 19 18 16 21 21 N 1.46733 * 110.10116 * 68.17454 * 19 18 16 22 22 C 1.34424 * 108.74961 * 119.19138 * 21 19 18 23 23 O 1.21555 * 124.85538 * 180.02562 * 22 21 19 24 24 C 1.47541 * 110.29072 * 0.02562 * 22 21 19 25 25 C 1.39627 * 132.35043 * 179.97438 * 24 22 21 26 26 C 1.37931 * 119.82788 * 180.02562 * 25 24 22 27 27 C 1.38387 * 120.32431 * 0.02562 * 26 25 24 28 28 C 1.38464 * 120.18682 * 359.93810 * 27 26 25 29 29 C 1.37580 * 119.95586 * 0.08111 * 28 27 26 30 30 C 1.53773 * 87.08133 * 25.43520 * 13 12 10 31 31 H 0.96993 * 119.99856 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99911 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.61096 * 334.57524 * 12 10 9 34 34 H 1.08996 * 113.69700 * 203.67756 * 12 10 9 35 35 H 0.96998 * 120.00462 * 21.65407 * 15 13 12 36 36 H 1.08991 * 109.47249 * 299.99862 * 18 16 15 37 37 H 1.08999 * 109.46677 * 60.00375 * 18 16 15 38 38 H 0.97000 * 125.62526 * 299.20241 * 21 19 18 39 39 H 1.08003 * 120.08198 * 359.97438 * 25 24 22 40 40 H 1.08000 * 119.84032 * 180.02562 * 26 25 24 41 41 H 1.08004 * 119.90443 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.02510 * 180.02562 * 28 27 26 43 43 H 1.09004 * 113.61751 * 89.11633 * 30 13 12 44 44 H 1.09003 * 113.61559 * 220.01827 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.8855 -3.6696 -0.7081 12 6 2.4456 -4.1432 1.4081 13 6 1.0885 -4.8655 1.4463 14 1 1.1328 -5.8542 1.9030 15 7 -0.0004 -4.0410 1.9761 16 6 -1.1073 -4.6260 2.4753 17 8 -1.2019 -5.8351 2.4855 18 6 -2.2276 -3.7778 3.0198 19 6 -3.3557 -4.6825 3.5195 20 1 -3.6564 -5.3748 2.7330 21 7 -2.9178 -5.4257 4.7065 22 6 -3.7145 -5.0992 5.7389 23 8 -3.6109 -5.5459 6.8646 24 6 -4.7326 -4.1212 5.3102 25 6 -5.7707 -3.4838 5.9925 26 6 -6.5874 -2.5957 5.3241 27 6 -6.3833 -2.3338 3.9807 28 6 -5.3555 -2.9615 3.2973 29 6 -4.5353 -3.8493 3.9544 30 6 1.1487 -4.8933 -0.0900 31 1 -0.4849 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.5332 -3.3396 2.1393 34 1 3.3005 -4.8194 1.4177 35 1 0.0751 -3.0740 1.9676 36 1 -1.8557 -3.1708 3.8450 37 1 -2.6064 -3.1269 2.2318 38 1 -2.1758 -6.0495 4.7407 39 1 -5.9342 -3.6863 7.0407 40 1 -7.3902 -2.1022 5.8518 41 1 -7.0266 -1.6369 3.4641 42 1 -5.1983 -2.7549 2.2490 43 1 1.6490 -5.7746 -0.4916 44 1 0.1894 -4.6953 -0.5683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022874599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:56 Heat of formation + Delta-G solvation = 0.662476 kcal Electronic energy + Delta-G solvation = -27617.050609 eV Core-core repulsion = 23728.393132 eV Total energy + Delta-G solvation = -3888.657477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44298 -39.85216 -38.17278 -38.06707 -36.13020 -33.73201 -32.75690 -31.69080 -30.80611 -30.37232 -29.76691 -25.43282 -25.16282 -24.28128 -24.02928 -22.60110 -21.46552 -20.62575 -20.02176 -18.81044 -17.57068 -17.35010 -16.97903 -16.80808 -16.14972 -15.93091 -15.44531 -15.01238 -14.79611 -14.70227 -14.58515 -14.19223 -13.93958 -13.75285 -13.42529 -13.23509 -13.09929 -12.84021 -12.68337 -12.21880 -12.02339 -11.87547 -11.70296 -11.50310 -11.25457 -11.00747 -10.89738 -10.42903 -10.25259 -10.04886 -9.90250 -9.70273 -9.63289 -9.49095 -9.20191 -9.03859 -8.98899 -8.65583 -7.14866 -5.95769 -3.25115 0.57281 1.04478 2.67232 2.77374 3.11567 3.32441 3.36216 3.40471 3.41243 3.63908 3.92002 4.21806 4.44624 4.58898 4.70676 4.77346 4.94627 5.03351 5.06098 5.13664 5.16182 5.22789 5.35392 5.41306 5.42312 5.50330 5.67744 5.69915 5.71018 5.85525 5.97508 6.06641 6.07379 6.14505 6.22628 6.29058 6.51582 6.55220 6.58893 6.69641 6.76829 6.93731 7.00768 7.59207 7.84660 8.14167 8.23970 8.43951 9.35373 9.89609 10.24780 11.26624 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.003309 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.802399 B = 8460.086048 C =10125.579659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.162 3.838 11 H 0.053 0.947 12 C -0.179 4.179 13 C 0.126 3.874 14 H 0.089 0.911 15 N -0.696 5.696 16 C 0.516 3.484 17 O -0.558 6.558 18 C -0.149 4.149 19 C 0.189 3.811 20 H 0.112 0.888 21 N -0.705 5.705 22 C 0.559 3.441 23 O -0.534 6.534 24 C -0.157 4.157 25 C -0.049 4.049 26 C -0.128 4.128 27 C -0.087 4.087 28 C -0.097 4.097 29 C -0.077 4.077 30 C -0.163 4.163 31 H 0.256 0.744 32 H 0.384 0.616 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.417 0.583 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.430 0.570 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.086 0.914 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 -6.641 5.941 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.051 3.949 11 H 0.071 0.929 12 C -0.221 4.221 13 C 0.020 3.980 14 H 0.107 0.893 15 N -0.348 5.348 16 C 0.303 3.697 17 O -0.438 6.438 18 C -0.190 4.190 19 C 0.083 3.917 20 H 0.130 0.870 21 N -0.362 5.362 22 C 0.346 3.654 23 O -0.412 6.412 24 C -0.160 4.160 25 C -0.068 4.068 26 C -0.146 4.146 27 C -0.106 4.106 28 C -0.115 4.115 29 C -0.078 4.078 30 C -0.202 4.202 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.256 0.744 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.273 0.727 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.105 0.895 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.393 -7.519 6.513 14.386 hybrid contribution 0.577 1.281 -0.136 1.412 sum -9.815 -6.237 6.377 13.263 Atomic orbital electron populations 1.69637 1.05078 1.25849 1.57542 1.24727 0.95555 0.97730 1.02564 0.86113 0.78895 0.83895 0.77237 1.20511 1.21796 1.21800 1.19286 0.91281 0.83746 1.42975 0.90882 1.42252 1.05540 0.99497 1.87845 1.21209 0.94089 0.85964 0.93677 0.92942 1.24064 0.94913 1.00259 1.02828 1.21724 0.87292 0.94612 0.94341 0.89327 1.45935 1.16756 1.11676 1.60418 1.20430 0.83388 0.88551 0.77360 1.90650 1.80520 1.14480 1.58133 1.22037 0.94366 0.98940 1.03647 1.19764 0.90601 0.92424 0.88922 0.87002 1.45944 1.34457 1.45885 1.09909 1.18318 0.81686 0.81048 0.84329 1.90795 1.72988 1.57230 1.20201 1.20463 0.98942 1.01193 0.95394 1.20860 0.92142 0.93744 1.00061 1.21147 0.99962 0.98581 0.94885 1.21362 0.96671 0.98100 0.94425 1.20414 0.94570 0.95841 1.00714 1.20421 0.96106 0.96770 0.94500 1.23709 1.01129 0.99295 0.96078 0.93386 0.78123 0.90688 0.90104 0.74436 0.87915 0.86483 0.72690 0.85105 0.85034 0.84825 0.84643 0.89511 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.29 13.06 55.49 0.72 -24.57 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.11 9.99 -15.06 -0.15 -6.26 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.71 -15.79 4.41 -52.64 -0.23 -16.02 16 10 C 0.16 2.93 4.53 -67.12 -0.30 2.63 16 11 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 12 C -0.18 -2.85 7.61 -25.92 -0.20 -3.04 16 13 C 0.13 1.95 4.28 -67.12 -0.29 1.66 16 14 H 0.09 1.36 7.55 -51.93 -0.39 0.97 16 15 N -0.70 -10.85 4.94 -53.02 -0.26 -11.11 16 16 C 0.52 7.55 7.72 -10.98 -0.08 7.46 16 17 O -0.56 -9.16 14.59 5.55 0.08 -9.08 16 18 C -0.15 -1.77 5.40 -27.89 -0.15 -1.92 16 19 C 0.19 2.18 3.05 -68.89 -0.21 1.97 16 20 H 0.11 1.26 7.92 -51.93 -0.41 0.85 16 21 N -0.71 -9.19 5.73 -55.86 -0.32 -9.51 16 22 C 0.56 8.20 8.34 -12.63 -0.11 8.09 16 23 O -0.53 -9.54 18.04 5.32 0.10 -9.45 16 24 C -0.16 -1.94 6.26 -105.05 -0.66 -2.60 16 25 C -0.05 -0.51 10.10 -39.18 -0.40 -0.91 16 26 C -0.13 -1.05 10.02 -39.64 -0.40 -1.45 16 27 C -0.09 -0.70 10.05 -39.44 -0.40 -1.09 16 28 C -0.10 -0.88 10.03 -39.74 -0.40 -1.28 16 29 C -0.08 -0.84 5.67 -104.26 -0.59 -1.43 16 30 C -0.16 -2.54 7.57 -25.92 -0.20 -2.73 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.38 8.92 6.96 -40.82 -0.28 8.63 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.42 7.11 7.18 -40.82 -0.29 6.82 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.43 5.68 8.15 -40.82 -0.33 5.35 16 39 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -30.63 370.93 -9.88 -40.50 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -5.91 Total: 19.01 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -4.62 Total: -1.25 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.09 Total: -61.21 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.18 Total: -18.53 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.63 -9.88 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022874599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.164 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds