Wall clock time and date at job start Tue Mar 31 2020 06:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 119.99648 * 2 1 4 4 H 1.48503 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46973 * 299.99432 * 3 2 1 6 6 H 1.48501 * 109.47129 * 59.99635 * 3 2 1 7 7 C 1.38805 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00243 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00233 * 180.02562 * 9 7 2 11 11 H 1.09006 * 112.90513 * 314.96920 * 10 9 7 12 12 C 1.53777 * 113.62010 * 86.22405 * 10 9 7 13 13 C 1.53784 * 87.07907 * 89.11750 * 12 10 9 14 14 H 1.09002 * 113.61392 * 139.98964 * 13 12 10 15 15 N 1.46498 * 113.61395 * 270.88565 * 13 12 10 16 16 C 1.34785 * 120.00367 * 201.65526 * 15 13 12 17 17 O 1.21285 * 119.99237 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00233 * 180.02562 * 16 15 13 19 19 C 1.52998 * 109.46844 * 179.97438 * 18 16 15 20 20 H 1.09006 * 110.08024 * 306.55859 * 19 18 16 21 21 N 1.46733 * 110.10116 * 68.17454 * 19 18 16 22 22 C 1.34424 * 108.74961 * 119.19138 * 21 19 18 23 23 O 1.21555 * 124.85538 * 180.02562 * 22 21 19 24 24 C 1.47541 * 110.29072 * 0.02562 * 22 21 19 25 25 C 1.39627 * 132.35043 * 179.97438 * 24 22 21 26 26 C 1.37931 * 119.82788 * 180.02562 * 25 24 22 27 27 C 1.38387 * 120.32431 * 0.02562 * 26 25 24 28 28 C 1.38464 * 120.18682 * 359.93810 * 27 26 25 29 29 C 1.37580 * 119.95586 * 0.08111 * 28 27 26 30 30 C 1.53773 * 87.08133 * 25.43520 * 13 12 10 31 31 H 0.96993 * 119.99856 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99911 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.61096 * 334.57524 * 12 10 9 34 34 H 1.08996 * 113.69700 * 203.67756 * 12 10 9 35 35 H 0.96998 * 120.00462 * 21.65407 * 15 13 12 36 36 H 1.08991 * 109.47249 * 299.99862 * 18 16 15 37 37 H 1.08999 * 109.46677 * 60.00375 * 18 16 15 38 38 H 0.97000 * 125.62526 * 299.20241 * 21 19 18 39 39 H 1.08003 * 120.08198 * 359.97438 * 25 24 22 40 40 H 1.08000 * 119.84032 * 180.02562 * 26 25 24 41 41 H 1.08004 * 119.90443 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.02510 * 180.02562 * 28 27 26 43 43 H 1.09004 * 113.61751 * 89.11633 * 30 13 12 44 44 H 1.09003 * 113.61559 * 220.01827 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.8855 -3.6696 -0.7081 12 6 2.4456 -4.1432 1.4081 13 6 1.0885 -4.8655 1.4463 14 1 1.1328 -5.8542 1.9030 15 7 -0.0004 -4.0410 1.9761 16 6 -1.1073 -4.6260 2.4753 17 8 -1.2019 -5.8351 2.4855 18 6 -2.2276 -3.7778 3.0198 19 6 -3.3557 -4.6825 3.5195 20 1 -3.6564 -5.3748 2.7330 21 7 -2.9178 -5.4257 4.7065 22 6 -3.7145 -5.0992 5.7389 23 8 -3.6109 -5.5459 6.8646 24 6 -4.7326 -4.1212 5.3102 25 6 -5.7707 -3.4838 5.9925 26 6 -6.5874 -2.5957 5.3241 27 6 -6.3833 -2.3338 3.9807 28 6 -5.3555 -2.9615 3.2973 29 6 -4.5353 -3.8493 3.9544 30 6 1.1487 -4.8933 -0.0900 31 1 -0.4849 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.5332 -3.3396 2.1393 34 1 3.3005 -4.8194 1.4177 35 1 0.0751 -3.0740 1.9676 36 1 -1.8557 -3.1708 3.8450 37 1 -2.6064 -3.1269 2.2318 38 1 -2.1758 -6.0495 4.7407 39 1 -5.9342 -3.6863 7.0407 40 1 -7.3902 -2.1022 5.8518 41 1 -7.0266 -1.6369 3.4641 42 1 -5.1983 -2.7549 2.2490 43 1 1.6490 -5.7746 -0.4916 44 1 0.1894 -4.6953 -0.5683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022874599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:55 Heat of formation + Delta-G solvation = -19.701670 kcal Electronic energy + Delta-G solvation = -27617.933664 eV Core-core repulsion = 23728.393132 eV Total energy + Delta-G solvation = -3889.540532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.40164 -41.09700 -39.39425 -39.08228 -37.16716 -35.44089 -34.13124 -32.64493 -31.80886 -31.62673 -30.99088 -26.77553 -26.37301 -25.81222 -24.86233 -23.97280 -22.34587 -21.68700 -21.09804 -20.18527 -19.20414 -18.51916 -18.10172 -17.81320 -17.13494 -16.96503 -16.67998 -16.45627 -16.15090 -15.88670 -15.50616 -15.42720 -15.15407 -14.97586 -14.75420 -14.65982 -14.05233 -13.80825 -13.57428 -13.34208 -13.29505 -13.08874 -12.91718 -12.78518 -12.67198 -12.53022 -12.08637 -12.02951 -11.88360 -11.70517 -11.15154 -11.06182 -10.92655 -10.79943 -10.52464 -9.96844 -9.93459 -9.80592 -8.96537 -7.92577 -5.19972 -0.25494 0.32202 1.50021 1.53140 1.59071 1.60202 1.71043 2.10765 2.21701 2.58212 2.81984 3.06526 3.26618 3.40574 3.66386 3.69566 3.83804 3.88273 3.94786 4.05160 4.13462 4.19460 4.23911 4.39824 4.42961 4.45360 4.59909 4.70313 4.76555 4.87883 4.93028 4.99684 5.00655 5.09265 5.18002 5.25127 5.38648 5.40803 5.46371 5.56696 5.69051 5.74356 5.85563 5.90720 6.31690 6.59281 7.04132 7.21493 7.38512 8.10630 8.36093 9.30040 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.003309 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.802399 B = 8460.086048 C =10125.579659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.061 4.061 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.145 3.855 11 H 0.052 0.948 12 C -0.164 4.164 13 C 0.126 3.874 14 H 0.095 0.905 15 N -0.700 5.700 16 C 0.516 3.484 17 O -0.576 6.576 18 C -0.140 4.140 19 C 0.192 3.808 20 H 0.116 0.884 21 N -0.703 5.703 22 C 0.551 3.449 23 O -0.580 6.580 24 C -0.186 4.186 25 C -0.060 4.060 26 C -0.121 4.121 27 C -0.078 4.078 28 C -0.101 4.101 29 C -0.080 4.080 30 C -0.148 4.148 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.410 0.590 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.426 0.574 39 H 0.132 0.868 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.155 0.845 43 H 0.115 0.885 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.126 -6.066 5.226 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.254 4.254 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.035 3.965 11 H 0.070 0.930 12 C -0.205 4.205 13 C 0.020 3.980 14 H 0.113 0.887 15 N -0.351 5.351 16 C 0.304 3.696 17 O -0.457 6.457 18 C -0.180 4.180 19 C 0.087 3.913 20 H 0.134 0.866 21 N -0.358 5.358 22 C 0.340 3.660 23 O -0.462 6.462 24 C -0.189 4.189 25 C -0.079 4.079 26 C -0.139 4.139 27 C -0.096 4.096 28 C -0.119 4.119 29 C -0.081 4.081 30 C -0.187 4.187 31 H 0.061 0.939 32 H 0.211 0.789 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.248 0.752 36 H 0.121 0.879 37 H 0.150 0.850 38 H 0.268 0.732 39 H 0.150 0.850 40 H 0.180 0.820 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.134 0.866 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.003 -6.974 5.771 14.248 hybrid contribution 0.787 1.063 0.038 1.323 sum -10.216 -5.911 5.810 13.155 Atomic orbital electron populations 1.69742 1.06002 1.25948 1.59206 1.25323 0.96289 1.00191 1.03639 0.85251 0.78255 0.80787 0.76467 1.19729 1.22470 1.22209 1.19536 0.91410 0.84946 1.41185 0.90994 1.42316 1.05323 1.00213 1.87995 1.21447 0.94573 0.85375 0.95074 0.93026 1.23953 0.96294 1.00042 1.00244 1.21762 0.87107 0.94731 0.94387 0.88729 1.45995 1.17219 1.11241 1.60666 1.20825 0.83539 0.88526 0.76742 1.90640 1.80857 1.15351 1.58840 1.21997 0.93502 0.98629 1.03881 1.19801 0.90840 0.92447 0.88242 0.86643 1.46011 1.33953 1.45537 1.10285 1.18800 0.82201 0.81126 0.83868 1.90748 1.74405 1.59123 1.21899 1.20423 0.99849 1.02187 0.96440 1.21089 0.92114 0.94213 1.00460 1.21518 0.99793 0.97373 0.95201 1.21815 0.96022 0.97430 0.94314 1.20748 0.94334 0.95103 1.01720 1.20417 0.96286 0.97500 0.93943 1.23674 1.00079 0.98912 0.96071 0.93893 0.78909 0.92627 0.87195 0.75249 0.87906 0.84990 0.73164 0.84958 0.81955 0.81549 0.82763 0.86629 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.03 13.06 21.65 0.28 -51.75 16 2 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 3 Si 0.96 42.84 29.55 68.60 2.03 44.87 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.24 -11.97 9.99 84.03 0.84 -11.13 16 8 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 9 N -0.72 -31.65 4.41 -320.46 -1.41 -33.06 16 10 C 0.14 5.06 4.53 45.52 0.21 5.27 16 11 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 12 C -0.16 -4.95 7.61 31.12 0.24 -4.72 16 13 C 0.13 3.72 4.28 45.52 0.19 3.91 16 14 H 0.09 2.73 7.55 -2.39 -0.02 2.72 16 15 N -0.70 -21.50 4.94 -440.03 -2.18 -23.67 16 16 C 0.52 14.87 7.72 87.65 0.68 15.54 16 17 O -0.58 -18.66 14.59 -3.05 -0.04 -18.71 16 18 C -0.14 -3.25 5.40 29.85 0.16 -3.09 16 19 C 0.19 4.38 3.05 44.24 0.13 4.51 16 20 H 0.12 2.54 7.92 -2.38 -0.02 2.52 16 21 N -0.70 -18.93 5.73 -449.11 -2.57 -21.51 16 22 C 0.55 16.88 8.34 86.75 0.72 17.60 16 23 O -0.58 -21.93 18.04 -3.89 -0.07 -22.00 16 24 C -0.19 -4.62 6.26 -20.14 -0.13 -4.74 16 25 C -0.06 -1.19 10.10 22.53 0.23 -0.96 16 26 C -0.12 -1.65 10.02 22.23 0.22 -1.42 16 27 C -0.08 -0.97 10.05 22.36 0.22 -0.74 16 28 C -0.10 -1.59 10.03 22.17 0.22 -1.36 16 29 C -0.08 -1.68 5.67 -19.63 -0.11 -1.79 16 30 C -0.15 -4.35 7.57 31.12 0.24 -4.12 16 31 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 32 H 0.38 17.53 6.96 -92.71 -0.65 16.88 16 33 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.41 13.98 7.18 -92.71 -0.67 13.31 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.43 11.75 8.15 -92.71 -0.76 11.00 16 39 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 42 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -66.62 370.93 -0.44 -67.06 By element: Atomic # 1 Polarization: 49.71 SS G_CDS: -1.01 Total: 48.71 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 4.54 Total: 10.06 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -5.88 Total: -129.99 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.11 Total: -40.70 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -66.62 -0.44 -67.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022874599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.357 kcal (2) G-P(sol) polarization free energy of solvation -66.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds