Wall clock time and date at job start Tue Mar 31 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00334 * 2 1 4 4 H 1.48496 * 109.47463 * 239.99998 * 3 2 1 5 5 H 1.48504 * 109.46656 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47407 * 119.99771 * 3 2 1 7 7 C 1.38815 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.91343 * 23.74950 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00127 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.08993 * 113.61491 * 89.15923 * 13 12 10 15 15 N 1.46501 * 113.61366 * 220.06429 * 13 12 10 16 16 C 1.34773 * 120.00122 * 204.99908 * 15 13 12 17 17 O 1.21289 * 119.99571 * 359.97438 * 16 15 13 18 18 C 1.50691 * 120.00316 * 179.97438 * 16 15 13 19 19 C 1.53003 * 109.47285 * 179.97438 * 18 16 15 20 20 H 1.08998 * 110.07633 * 55.10845 * 19 18 16 21 21 N 1.46723 * 110.09978 * 293.54927 * 19 18 16 22 22 C 1.34421 * 108.75073 * 240.79983 * 21 19 18 23 23 O 1.21557 * 124.85453 * 179.97438 * 22 21 19 24 24 C 1.47543 * 110.29161 * 0.02562 * 22 21 19 25 25 C 1.39621 * 132.34760 * 180.02562 * 24 22 21 26 26 C 1.37937 * 119.82812 * 179.97438 * 25 24 22 27 27 C 1.38390 * 120.32099 * 359.97438 * 26 25 24 28 28 C 1.38474 * 120.18672 * 359.97438 * 27 26 25 29 29 C 1.37574 * 119.95628 * 0.02562 * 28 27 26 30 30 C 1.53782 * 113.61191 * 252.49800 * 10 9 7 31 31 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 32 32 H 0.96997 * 119.99530 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 34 34 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 35 35 H 0.97002 * 119.99797 * 24.99368 * 15 13 12 36 36 H 1.09002 * 109.47503 * 300.00170 * 18 16 15 37 37 H 1.09005 * 109.47302 * 60.00162 * 18 16 15 38 38 H 0.97004 * 125.62554 * 60.83979 * 21 19 18 39 39 H 1.08002 * 120.08529 * 359.94198 * 25 24 22 40 40 H 1.07999 * 119.83975 * 179.97438 * 26 25 24 41 41 H 1.07997 * 119.90705 * 179.97438 * 27 26 25 42 42 H 1.07993 * 120.02396 * 180.02562 * 28 27 26 43 43 H 1.08997 * 113.61668 * 334.56642 * 30 10 9 44 44 H 1.08994 * 113.61387 * 105.47377 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0657 -3.5646 0.4067 12 6 1.2596 -4.8285 0.5970 13 6 1.8462 -5.6996 -0.5264 14 1 2.7958 -6.1668 -0.2660 15 7 0.8842 -6.6441 -1.0998 16 6 1.3199 -7.7729 -1.6933 17 8 2.5086 -8.0065 -1.7532 18 6 0.3304 -8.7447 -2.2826 19 6 1.0810 -9.9313 -2.8905 20 1 1.7321 -10.3847 -2.1431 21 7 1.8703 -9.4902 -4.0460 22 6 1.4409 -10.1457 -5.1382 23 8 1.8936 -10.0023 -6.2572 24 6 0.3408 -11.0632 -4.7848 25 6 -0.4271 -11.9476 -5.5447 26 6 -1.4114 -12.6986 -4.9366 27 6 -1.6411 -12.5799 -3.5771 28 6 -0.8829 -11.7057 -2.8165 29 6 0.1013 -10.9521 -3.4132 30 6 2.0001 -4.4027 -1.3419 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 -0.0002 33 1 1.5904 -5.1205 1.5938 34 1 0.1793 -4.6993 0.5305 35 1 -0.0664 -6.4570 -1.0521 36 1 -0.3396 -9.1005 -1.4999 37 1 -0.2502 -8.2462 -3.0589 38 1 2.5846 -8.8342 -4.0251 39 1 -0.2512 -12.0431 -6.6060 40 1 -2.0058 -13.3824 -5.5243 41 1 -2.4138 -13.1708 -3.1079 42 1 -1.0641 -11.6155 -1.7557 43 1 1.1222 -4.1578 -1.9398 44 1 2.9286 -4.3510 -1.9104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022874600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:00 Heat of formation + Delta-G solvation = -2.251695 kcal Electronic energy + Delta-G solvation = -26593.014736 eV Core-core repulsion = 22704.230891 eV Total energy + Delta-G solvation = -3888.783845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66375 -39.92697 -38.34395 -38.12544 -36.34458 -34.18194 -32.89526 -31.94178 -31.01335 -30.63338 -29.75609 -25.56779 -25.19270 -24.30716 -24.18907 -22.35109 -21.60242 -20.79311 -20.40698 -19.31094 -17.67718 -17.35655 -17.14539 -17.01040 -16.48370 -16.28599 -15.74227 -15.28300 -14.91040 -14.65405 -14.58242 -14.46508 -14.02501 -13.99247 -13.47929 -13.18620 -13.07027 -12.95596 -12.89071 -12.45625 -12.25496 -11.99689 -11.98121 -11.49545 -11.30982 -10.95922 -10.71511 -10.56532 -10.40802 -10.22268 -10.13154 -9.90371 -9.69081 -9.65762 -9.42822 -9.21530 -8.96578 -8.86156 -7.03584 -5.84271 -3.13410 0.35370 0.80661 2.46503 2.48531 2.92676 3.07286 3.40744 3.42121 3.45438 3.46196 3.68055 3.98558 4.28623 4.44103 4.53059 4.54682 4.65393 4.76333 4.86597 4.93436 5.00178 5.08858 5.15747 5.18594 5.29765 5.38234 5.42294 5.46264 5.76082 5.80225 5.82417 5.87134 5.91659 6.04234 6.18166 6.23601 6.32255 6.39179 6.51416 6.54699 6.65927 6.78151 6.98254 7.47001 7.64539 7.97250 8.10863 8.34156 9.45557 10.01531 10.35924 11.37962 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.001971 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.135997 B =14204.958106 C =14470.277304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.158 4.158 13 C 0.116 3.884 14 H 0.110 0.890 15 N -0.710 5.710 16 C 0.513 3.487 17 O -0.547 6.547 18 C -0.150 4.150 19 C 0.189 3.811 20 H 0.112 0.888 21 N -0.706 5.706 22 C 0.557 3.443 23 O -0.529 6.529 24 C -0.154 4.154 25 C -0.047 4.047 26 C -0.126 4.126 27 C -0.089 4.089 28 C -0.100 4.100 29 C -0.080 4.080 30 C -0.176 4.176 31 H 0.257 0.743 32 H 0.385 0.615 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.401 0.599 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.432 0.568 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 -28.054 -3.909 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.198 4.198 13 C 0.011 3.989 14 H 0.128 0.872 15 N -0.359 5.359 16 C 0.299 3.701 17 O -0.425 6.425 18 C -0.191 4.191 19 C 0.083 3.917 20 H 0.130 0.870 21 N -0.363 5.363 22 C 0.344 3.656 23 O -0.406 6.406 24 C -0.157 4.157 25 C -0.066 4.066 26 C -0.144 4.144 27 C -0.107 4.107 28 C -0.118 4.118 29 C -0.081 4.081 30 C -0.219 4.219 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.235 0.765 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.276 0.724 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.098 0.902 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.586 -27.964 -4.516 28.695 hybrid contribution -0.170 1.339 0.050 1.351 sum -4.756 -26.625 -4.466 27.412 Atomic orbital electron populations 1.69642 1.05159 1.25951 1.57324 1.24772 0.95554 0.97856 1.02648 0.86243 0.78543 0.83325 0.77932 1.21176 1.21665 1.21165 1.19269 0.91128 0.84140 1.43198 0.91024 1.42341 1.05661 0.99754 1.86998 1.21338 0.95494 0.84963 0.92590 0.90217 1.23864 1.01221 0.97327 0.97425 1.22563 0.93183 0.87481 0.95632 0.87201 1.46062 1.10703 1.21175 1.57973 1.20449 0.89555 0.82132 0.77982 1.90693 1.17131 1.76140 1.58582 1.22067 0.98797 0.95691 1.02502 1.19732 0.91116 0.91793 0.89098 0.87044 1.45969 1.38233 1.44290 1.07851 1.18325 0.82357 0.80545 0.84353 1.90820 1.61190 1.66843 1.21757 1.20491 0.99599 1.00534 0.95068 1.20908 0.92854 0.92664 1.00219 1.21174 0.98134 0.99924 0.95170 1.21355 0.98390 0.96999 0.93966 1.20344 0.94861 0.96123 1.00487 1.20420 0.96302 0.96904 0.94482 1.24374 1.01855 0.95060 1.00580 0.93367 0.78096 0.91484 0.89970 0.76475 0.87069 0.87860 0.72408 0.84948 0.84929 0.84850 0.84913 0.90246 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.09 5.40 -52.64 -0.28 -17.38 16 10 C 0.17 3.16 4.48 -67.12 -0.30 2.86 16 11 H 0.08 1.50 8.10 -51.93 -0.42 1.07 16 12 C -0.16 -2.31 7.58 -25.92 -0.20 -2.51 16 13 C 0.12 1.58 4.25 -67.02 -0.28 1.29 16 14 H 0.11 1.57 7.47 -51.93 -0.39 1.18 16 15 N -0.71 -7.69 5.36 -52.93 -0.28 -7.97 16 16 C 0.51 5.53 7.71 -10.99 -0.08 5.45 16 17 O -0.55 -7.68 14.44 5.55 0.08 -7.60 16 18 C -0.15 -1.07 5.41 -27.89 -0.15 -1.22 16 19 C 0.19 1.57 3.06 -68.89 -0.21 1.36 16 20 H 0.11 0.90 7.98 -51.93 -0.41 0.49 16 21 N -0.71 -7.76 5.70 -55.86 -0.32 -8.08 16 22 C 0.56 7.11 8.34 -12.63 -0.11 7.01 16 23 O -0.53 -8.71 18.04 5.32 0.10 -8.62 16 24 C -0.15 -1.52 6.26 -105.05 -0.66 -2.18 16 25 C -0.05 -0.38 10.10 -39.18 -0.40 -0.78 16 26 C -0.13 -0.71 10.02 -39.64 -0.40 -1.11 16 27 C -0.09 -0.43 10.05 -39.44 -0.40 -0.82 16 28 C -0.10 -0.54 10.03 -39.74 -0.40 -0.94 16 29 C -0.08 -0.61 5.67 -104.26 -0.59 -1.21 16 30 C -0.18 -2.94 7.68 -25.82 -0.20 -3.14 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.38 9.76 7.92 -40.82 -0.32 9.44 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 35 H 0.40 3.46 8.73 -40.82 -0.36 3.10 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.43 5.09 8.00 -40.82 -0.33 4.76 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 42 H 0.13 0.40 8.06 -52.49 -0.42 -0.03 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -34.43 374.38 -9.98 -44.42 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.00 Total: 12.57 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -4.62 Total: -3.22 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.16 Total: -60.26 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.18 Total: -16.22 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.43 -9.98 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022874600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.167 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds