Wall clock time and date at job start Tue Mar 31 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00453 * 2 1 4 4 H 1.48497 * 109.47002 * 270.00480 * 3 2 1 5 5 H 1.48500 * 109.46995 * 30.00015 * 3 2 1 6 6 H 1.48497 * 109.47405 * 150.00188 * 3 2 1 7 7 C 1.38811 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00356 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00144 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.84871 * 314.83100 * 10 9 7 12 12 C 1.53777 * 113.61247 * 86.02803 * 10 9 7 13 13 C 1.53778 * 87.08157 * 89.19921 * 12 10 9 14 14 H 1.09004 * 113.61363 * 140.06481 * 13 12 10 15 15 N 1.46504 * 113.61381 * 270.88095 * 13 12 10 16 16 C 1.34770 * 119.99773 * 201.67801 * 15 13 12 17 17 O 1.21283 * 120.00350 * 359.97438 * 16 15 13 18 18 C 1.50708 * 119.99982 * 180.02562 * 16 15 13 19 19 N 1.46497 * 109.47002 * 180.02562 * 18 16 15 20 20 C 1.46742 * 125.62248 * 269.99713 * 19 18 16 21 21 C 1.50828 * 106.25174 * 180.02562 * 20 19 18 22 22 C 1.37574 * 133.24047 * 180.30117 * 21 20 19 23 23 C 1.38474 * 119.95466 * 180.19506 * 22 21 20 24 24 C 1.38388 * 120.19089 * 359.45002 * 23 22 21 25 25 C 1.37943 * 120.31635 * 0.29274 * 24 23 22 26 26 C 1.39620 * 119.82615 * 359.97438 * 25 24 23 27 27 C 1.34423 * 125.62646 * 90.02551 * 19 18 16 28 28 O 1.21555 * 124.85460 * 359.97438 * 27 19 18 29 29 C 1.53775 * 87.08059 * 25.43178 * 13 12 10 30 30 H 0.97004 * 119.99492 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99798 * 359.97438 * 9 7 2 32 32 H 1.09006 * 113.61473 * 334.64697 * 12 10 9 33 33 H 1.08999 * 113.61592 * 203.75220 * 12 10 9 34 34 H 0.96992 * 120.00014 * 21.67534 * 15 13 12 35 35 H 1.08991 * 109.46845 * 59.99893 * 18 16 15 36 36 H 1.08998 * 109.46791 * 299.99973 * 18 16 15 37 37 H 1.08999 * 110.09647 * 299.21677 * 20 19 18 38 38 H 1.08993 * 110.09336 * 60.82879 * 20 19 18 39 39 H 1.08000 * 120.02546 * 359.92032 * 22 21 20 40 40 H 1.08002 * 119.90734 * 179.72711 * 23 22 21 41 41 H 1.07993 * 119.84372 * 180.27542 * 24 23 22 42 42 H 1.08001 * 120.08390 * 179.97438 * 25 24 23 43 43 H 1.09001 * 113.61817 * 89.12101 * 29 13 12 44 44 H 1.08999 * 113.61369 * 220.01653 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.8828 -3.6694 -0.7129 12 6 2.4504 -4.1416 1.4051 13 6 1.0943 -4.8655 1.4485 14 1 1.1411 -5.8531 1.9073 15 7 0.0061 -4.0417 1.9811 16 6 -1.0980 -4.6277 2.4849 17 8 -1.1910 -5.8369 2.4969 18 6 -2.2177 -3.7804 3.0323 19 7 -3.2944 -4.6477 3.5167 20 6 -4.4298 -5.1267 2.7201 21 6 -5.2632 -5.9798 3.6435 22 6 -6.4275 -6.6927 3.4735 23 6 -6.9699 -7.3946 4.5368 24 6 -6.3382 -7.3907 5.7680 25 6 -5.1675 -6.6835 5.9477 26 6 -4.6174 -5.9688 4.8819 27 6 -3.4055 -5.1354 4.7644 28 8 -2.6198 -4.9208 5.6667 29 6 1.1496 -4.8947 -0.0880 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3881 0.0002 32 1 2.5395 -3.3371 2.1353 33 1 3.3062 -4.8166 1.4111 34 1 0.0804 -3.0747 1.9712 35 1 -2.6001 -3.1310 2.2449 36 1 -1.8436 -3.1718 3.8555 37 1 -5.0168 -4.2822 2.3590 38 1 -4.0730 -5.7223 1.8800 39 1 -6.9205 -6.7013 2.5126 40 1 -7.8864 -7.9504 4.4037 41 1 -6.7638 -7.9437 6.5922 42 1 -4.6778 -6.6827 6.9103 43 1 1.6496 -5.7757 -0.4903 44 1 0.1885 -4.6983 -0.5633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022991019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:44 Heat of formation + Delta-G solvation = 15.810225 kcal Electronic energy + Delta-G solvation = -27482.514554 eV Core-core repulsion = 23594.513932 eV Total energy + Delta-G solvation = -3888.000621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.28970 -39.77557 -38.37820 -37.69808 -36.03383 -33.67615 -32.74899 -32.00265 -31.33704 -29.94991 -28.03372 -26.81676 -25.23964 -24.51836 -23.54357 -22.38965 -21.90606 -20.56684 -19.78874 -18.75955 -17.52014 -17.14390 -16.99835 -16.87466 -16.18992 -15.69345 -15.29874 -15.02104 -14.81934 -14.64244 -14.33412 -14.23033 -13.81614 -13.57370 -13.39234 -13.35361 -13.22025 -13.16324 -12.58274 -12.28988 -12.09319 -11.85182 -11.72991 -11.45082 -11.32035 -10.96277 -10.86188 -10.37085 -10.25455 -10.02126 -9.94149 -9.79925 -9.59534 -9.30736 -9.14167 -8.99153 -8.70652 -8.57614 -7.11114 -5.92269 -3.21349 0.57478 1.02097 2.50927 2.73378 2.86282 3.36034 3.42632 3.43152 3.52334 3.70934 3.88810 4.25449 4.47814 4.60945 4.69411 4.95631 5.01215 5.04929 5.11337 5.13595 5.19718 5.23101 5.27021 5.38542 5.40390 5.47536 5.48279 5.65852 5.72206 5.88683 5.91848 6.00983 6.09964 6.11405 6.27794 6.33411 6.37574 6.53652 6.57035 6.64755 6.82239 6.89442 7.07688 7.62118 7.91070 8.08784 8.27574 8.53957 9.38787 9.93292 10.28607 11.30126 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.002684 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.628773 B =10430.429929 C =11090.509696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.162 3.838 11 H 0.053 0.947 12 C -0.179 4.179 13 C 0.128 3.872 14 H 0.087 0.913 15 N -0.696 5.696 16 C 0.496 3.504 17 O -0.545 6.545 18 C 0.116 3.884 19 N -0.594 5.594 20 C 0.141 3.859 21 C -0.077 4.077 22 C -0.104 4.104 23 C -0.091 4.091 24 C -0.130 4.130 25 C -0.047 4.047 26 C -0.151 4.151 27 C 0.563 3.437 28 O -0.524 6.524 29 C -0.162 4.162 30 H 0.257 0.743 31 H 0.384 0.616 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.416 0.584 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 -13.160 6.283 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.051 3.949 11 H 0.070 0.930 12 C -0.220 4.220 13 C 0.022 3.978 14 H 0.105 0.895 15 N -0.350 5.350 16 C 0.281 3.719 17 O -0.423 6.423 18 C -0.009 4.009 19 N -0.326 5.326 20 C 0.019 3.981 21 C -0.078 4.078 22 C -0.122 4.122 23 C -0.109 4.109 24 C -0.148 4.148 25 C -0.066 4.066 26 C -0.154 4.154 27 C 0.352 3.648 28 O -0.401 6.401 29 C -0.202 4.202 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.255 0.745 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.104 0.896 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.821 -13.640 6.716 19.888 hybrid contribution 0.262 1.375 -0.144 1.407 sum -12.559 -12.265 6.572 18.745 Atomic orbital electron populations 1.69631 1.05068 1.25923 1.57552 1.24732 0.95577 0.97742 1.02638 0.86163 0.78712 0.83588 0.77552 1.21703 1.21743 1.20719 1.19243 0.91250 0.83744 1.42953 0.90925 1.42242 1.05529 0.99483 1.87862 1.21205 0.94042 0.85939 0.93698 0.92960 1.24062 0.94905 1.00269 1.02775 1.21700 0.87283 0.94640 0.94174 0.89491 1.45870 1.16924 1.11580 1.60645 1.21030 0.83829 0.89180 0.77903 1.90666 1.80195 1.14411 1.57007 1.21234 0.86022 0.91398 1.02241 1.47314 1.24007 1.50063 1.11213 1.20521 0.86118 0.97718 0.93778 1.20491 0.95155 0.97021 0.95119 1.20307 0.94666 0.97458 0.99798 1.21311 0.99423 0.97574 0.92583 1.21118 0.95605 1.00126 0.97970 1.20878 0.94405 0.93393 0.97965 1.20411 0.97428 1.01926 0.95636 1.18224 0.84896 0.79329 0.82317 1.90777 1.46594 1.60486 1.42221 1.23704 1.01080 0.99265 0.96116 0.93366 0.78143 0.90601 0.90128 0.74512 0.86117 0.86456 0.88269 0.88195 0.85040 0.85046 0.85076 0.85067 0.89553 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.66 13.06 55.49 0.72 -24.94 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.18 9.99 -15.06 -0.15 -6.33 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.71 -16.14 4.41 -52.64 -0.23 -16.37 16 10 C 0.16 3.04 4.53 -67.12 -0.30 2.74 16 11 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.18 -3.00 7.61 -25.92 -0.20 -3.20 16 13 C 0.13 2.15 4.28 -67.12 -0.29 1.86 16 14 H 0.09 1.50 7.55 -51.93 -0.39 1.10 16 15 N -0.70 -11.88 4.95 -53.02 -0.26 -12.14 16 16 C 0.50 8.46 7.90 -10.98 -0.09 8.38 16 17 O -0.55 -10.88 16.07 5.56 0.09 -10.79 16 18 C 0.12 1.64 6.54 -5.19 -0.03 1.60 16 19 N -0.59 -8.43 2.45 -177.51 -0.44 -8.86 16 20 C 0.14 1.52 7.38 -5.00 -0.04 1.48 16 21 C -0.08 -0.83 6.38 -104.27 -0.66 -1.49 16 22 C -0.10 -0.85 10.03 -39.74 -0.40 -1.24 16 23 C -0.09 -0.65 10.05 -39.44 -0.40 -1.05 16 24 C -0.13 -1.05 10.02 -39.63 -0.40 -1.45 16 25 C -0.05 -0.52 10.10 -39.17 -0.40 -0.91 16 26 C -0.15 -1.98 6.26 -105.05 -0.66 -2.64 16 27 C 0.56 9.18 7.97 -12.62 -0.10 9.08 16 28 O -0.52 -10.31 17.71 5.32 0.09 -10.22 16 29 C -0.16 -2.66 7.57 -25.92 -0.20 -2.85 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.38 9.09 6.98 -40.82 -0.28 8.81 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.42 7.48 7.18 -40.82 -0.29 7.19 16 35 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.12 1.64 8.00 -51.93 -0.42 1.23 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -33.24 374.87 -9.80 -43.04 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -6.00 Total: 14.83 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -4.40 Total: 3.58 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.21 Total: -62.32 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.18 Total: -21.01 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.24 -9.80 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022991019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.848 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds