Wall clock time and date at job start Tue Mar 31 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00453 * 2 1 4 4 H 1.48497 * 109.47002 * 270.00480 * 3 2 1 5 5 H 1.48500 * 109.46995 * 30.00015 * 3 2 1 6 6 H 1.48497 * 109.47405 * 150.00188 * 3 2 1 7 7 C 1.38811 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00356 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00144 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.84871 * 314.83100 * 10 9 7 12 12 C 1.53777 * 113.61247 * 86.02803 * 10 9 7 13 13 C 1.53778 * 87.08157 * 89.19921 * 12 10 9 14 14 H 1.09004 * 113.61363 * 140.06481 * 13 12 10 15 15 N 1.46504 * 113.61381 * 270.88095 * 13 12 10 16 16 C 1.34770 * 119.99773 * 201.67801 * 15 13 12 17 17 O 1.21283 * 120.00350 * 359.97438 * 16 15 13 18 18 C 1.50708 * 119.99982 * 180.02562 * 16 15 13 19 19 N 1.46497 * 109.47002 * 180.02562 * 18 16 15 20 20 C 1.46742 * 125.62248 * 269.99713 * 19 18 16 21 21 C 1.50828 * 106.25174 * 180.02562 * 20 19 18 22 22 C 1.37574 * 133.24047 * 180.30117 * 21 20 19 23 23 C 1.38474 * 119.95466 * 180.19506 * 22 21 20 24 24 C 1.38388 * 120.19089 * 359.45002 * 23 22 21 25 25 C 1.37943 * 120.31635 * 0.29274 * 24 23 22 26 26 C 1.39620 * 119.82615 * 359.97438 * 25 24 23 27 27 C 1.34423 * 125.62646 * 90.02551 * 19 18 16 28 28 O 1.21555 * 124.85460 * 359.97438 * 27 19 18 29 29 C 1.53775 * 87.08059 * 25.43178 * 13 12 10 30 30 H 0.97004 * 119.99492 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99798 * 359.97438 * 9 7 2 32 32 H 1.09006 * 113.61473 * 334.64697 * 12 10 9 33 33 H 1.08999 * 113.61592 * 203.75220 * 12 10 9 34 34 H 0.96992 * 120.00014 * 21.67534 * 15 13 12 35 35 H 1.08991 * 109.46845 * 59.99893 * 18 16 15 36 36 H 1.08998 * 109.46791 * 299.99973 * 18 16 15 37 37 H 1.08999 * 110.09647 * 299.21677 * 20 19 18 38 38 H 1.08993 * 110.09336 * 60.82879 * 20 19 18 39 39 H 1.08000 * 120.02546 * 359.92032 * 22 21 20 40 40 H 1.08002 * 119.90734 * 179.72711 * 23 22 21 41 41 H 1.07993 * 119.84372 * 180.27542 * 24 23 22 42 42 H 1.08001 * 120.08390 * 179.97438 * 25 24 23 43 43 H 1.09001 * 113.61817 * 89.12101 * 29 13 12 44 44 H 1.08999 * 113.61369 * 220.01653 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.8828 -3.6694 -0.7129 12 6 2.4504 -4.1416 1.4051 13 6 1.0943 -4.8655 1.4485 14 1 1.1411 -5.8531 1.9073 15 7 0.0061 -4.0417 1.9811 16 6 -1.0980 -4.6277 2.4849 17 8 -1.1910 -5.8369 2.4969 18 6 -2.2177 -3.7804 3.0323 19 7 -3.2944 -4.6477 3.5167 20 6 -4.4298 -5.1267 2.7201 21 6 -5.2632 -5.9798 3.6435 22 6 -6.4275 -6.6927 3.4735 23 6 -6.9699 -7.3946 4.5368 24 6 -6.3382 -7.3907 5.7680 25 6 -5.1675 -6.6835 5.9477 26 6 -4.6174 -5.9688 4.8819 27 6 -3.4055 -5.1354 4.7644 28 8 -2.6198 -4.9208 5.6667 29 6 1.1496 -4.8947 -0.0880 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3881 0.0002 32 1 2.5395 -3.3371 2.1353 33 1 3.3062 -4.8166 1.4111 34 1 0.0804 -3.0747 1.9712 35 1 -2.6001 -3.1310 2.2449 36 1 -1.8436 -3.1718 3.8555 37 1 -5.0168 -4.2822 2.3590 38 1 -4.0730 -5.7223 1.8800 39 1 -6.9205 -6.7013 2.5126 40 1 -7.8864 -7.9504 4.4037 41 1 -6.7638 -7.9437 6.5922 42 1 -4.6778 -6.6827 6.9103 43 1 1.6496 -5.7757 -0.4903 44 1 0.1885 -4.6983 -0.5633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022991019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:43 Heat of formation + Delta-G solvation = -5.533598 kcal Electronic energy + Delta-G solvation = -27483.440091 eV Core-core repulsion = 23594.513932 eV Total energy + Delta-G solvation = -3888.926159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28404 -41.13637 -39.51504 -38.96026 -37.13374 -35.46274 -34.22040 -33.01900 -32.07059 -31.75423 -29.07544 -27.73440 -26.68960 -26.17937 -24.77219 -23.64502 -22.66573 -21.80429 -20.95250 -20.21191 -19.23752 -18.47347 -18.06735 -17.95577 -17.11679 -16.87713 -16.66865 -16.35237 -16.25679 -15.79342 -15.53955 -15.39895 -15.09817 -15.00829 -14.64341 -14.61249 -14.45276 -14.05737 -13.53781 -13.39073 -13.32619 -13.12752 -13.05581 -12.78628 -12.76956 -12.55812 -12.12882 -12.04011 -11.91250 -11.72384 -11.31684 -11.11346 -11.08428 -10.82883 -10.20513 -10.00101 -9.92353 -9.68252 -8.97828 -7.93109 -5.20614 -0.24233 0.33668 1.43684 1.49415 1.50546 1.52166 1.58972 1.74049 2.31533 2.57857 2.81703 3.06937 3.36968 3.39530 3.62360 3.72676 3.83702 3.90725 3.97116 4.04379 4.17675 4.20935 4.22318 4.32574 4.38205 4.43153 4.47133 4.51427 4.76643 4.83613 4.87611 4.95972 4.97265 5.05567 5.07837 5.22444 5.37119 5.37452 5.42810 5.47518 5.55342 5.70529 5.80476 5.91617 6.30660 6.51008 6.90874 7.14795 7.37527 8.09457 8.35084 9.29244 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.002684 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.628773 B =10430.429929 C =11090.509696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.064 4.064 3 Si 0.964 3.036 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.717 5.717 10 C 0.148 3.852 11 H 0.056 0.944 12 C -0.164 4.164 13 C 0.123 3.877 14 H 0.086 0.914 15 N -0.696 5.696 16 C 0.496 3.504 17 O -0.576 6.576 18 C 0.117 3.883 19 N -0.596 5.596 20 C 0.137 3.863 21 C -0.080 4.080 22 C -0.101 4.101 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.065 4.065 26 C -0.191 4.191 27 C 0.546 3.454 28 O -0.580 6.580 29 C -0.145 4.145 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.412 0.588 35 H 0.148 0.852 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.164 0.836 40 H 0.172 0.828 41 H 0.161 0.839 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.932 -14.594 5.383 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.257 4.257 3 Si 0.795 3.205 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.038 3.962 11 H 0.074 0.926 12 C -0.205 4.205 13 C 0.018 3.982 14 H 0.104 0.896 15 N -0.348 5.348 16 C 0.282 3.718 17 O -0.456 6.456 18 C -0.008 4.008 19 N -0.326 5.326 20 C 0.015 3.985 21 C -0.081 4.081 22 C -0.119 4.119 23 C -0.095 4.095 24 C -0.144 4.144 25 C -0.084 4.084 26 C -0.195 4.195 27 C 0.338 3.662 28 O -0.461 6.461 29 C -0.184 4.184 30 H 0.061 0.939 31 H 0.211 0.789 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.250 0.750 35 H 0.166 0.834 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.182 0.818 40 H 0.189 0.811 41 H 0.179 0.821 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.350 -15.102 5.783 21.620 hybrid contribution 0.721 1.704 0.114 1.854 sum -13.628 -13.398 5.897 20.000 Atomic orbital electron populations 1.69744 1.06027 1.25992 1.59187 1.25364 0.96343 1.00326 1.03692 0.85277 0.77787 0.80354 0.77100 1.21925 1.22396 1.19993 1.19512 0.91455 0.84875 1.41195 0.90859 1.42317 1.05322 1.00217 1.87978 1.21422 0.94545 0.85283 0.94901 0.92647 1.23970 0.96008 1.00022 1.00491 1.21779 0.87277 0.94498 0.94661 0.89607 1.45913 1.17146 1.11292 1.60491 1.21479 0.84186 0.88992 0.77180 1.90641 1.80844 1.15764 1.58362 1.21282 0.85614 0.91229 1.02688 1.47501 1.24480 1.49377 1.11217 1.20781 0.85374 0.99000 0.93303 1.20652 0.96055 0.97625 0.93802 1.20752 0.93438 0.96143 1.01605 1.21844 1.00011 0.96135 0.91474 1.21491 0.94202 0.99105 0.99591 1.21067 0.95780 0.94169 0.97368 1.20378 0.97285 1.03899 0.97890 1.18954 0.85549 0.79389 0.82340 1.90713 1.48746 1.62758 1.43904 1.23656 1.00208 0.99060 0.95518 0.93943 0.78942 0.92556 0.87104 0.75010 0.83422 0.86887 0.85247 0.88046 0.81821 0.81071 0.82118 0.85781 0.86517 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.21 13.06 21.65 0.28 -52.92 16 2 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 3 Si 0.96 43.80 29.55 68.60 2.03 45.82 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.24 -12.19 9.99 84.03 0.84 -11.35 16 8 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.72 -32.52 4.41 -320.45 -1.41 -33.93 16 10 C 0.15 5.38 4.53 45.51 0.21 5.58 16 11 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 12 C -0.16 -5.31 7.61 31.12 0.24 -5.07 16 13 C 0.12 4.06 4.28 45.51 0.19 4.26 16 14 H 0.09 2.89 7.55 -2.38 -0.02 2.87 16 15 N -0.70 -24.07 4.95 -440.04 -2.18 -26.25 16 16 C 0.50 17.32 7.90 87.66 0.69 18.01 16 17 O -0.58 -23.49 16.07 -3.04 -0.05 -23.54 16 18 C 0.12 3.40 6.54 85.64 0.56 3.96 16 19 N -0.60 -17.41 2.45 -833.99 -2.05 -19.46 16 20 C 0.14 2.84 7.38 85.63 0.63 3.47 16 21 C -0.08 -1.63 6.38 -19.63 -0.13 -1.76 16 22 C -0.10 -1.31 10.03 22.17 0.22 -1.09 16 23 C -0.08 -0.80 10.05 22.36 0.22 -0.57 16 24 C -0.13 -1.72 10.02 22.24 0.22 -1.50 16 25 C -0.06 -1.42 10.10 22.53 0.23 -1.19 16 26 C -0.19 -5.18 6.26 -20.14 -0.13 -5.30 16 27 C 0.55 18.93 7.97 86.76 0.69 19.62 16 28 O -0.58 -24.77 17.71 -3.89 -0.07 -24.84 16 29 C -0.15 -4.53 7.57 31.12 0.24 -4.30 16 30 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.38 17.99 6.98 -92.70 -0.65 17.34 16 32 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.41 15.15 7.18 -92.71 -0.67 14.49 16 35 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.11 3.38 8.00 -2.39 -0.02 3.36 16 37 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.17 0.47 8.06 -2.91 -0.02 0.44 16 41 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.76 374.87 1.68 -73.07 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.27 Total: 42.19 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 5.40 Total: 19.85 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -5.36 Total: -132.56 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.12 Total: -48.38 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -74.76 1.68 -73.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022991019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.540 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds