Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99643 * 2 1 4 4 H 1.48509 * 109.46647 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47242 * 299.99436 * 3 2 1 6 6 H 1.48491 * 109.47167 * 60.00085 * 3 2 1 7 7 C 1.38807 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99996 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99850 * 180.02562 * 9 7 2 11 11 H 1.08994 * 112.84856 * 336.19354 * 10 9 7 12 12 C 1.53958 * 113.66484 * 107.43574 * 10 9 7 13 13 C 1.53785 * 87.01688 * 139.93145 * 12 10 9 14 14 H 1.09000 * 113.61299 * 89.22880 * 13 12 10 15 15 N 1.46504 * 113.61382 * 220.04837 * 13 12 10 16 16 C 1.34773 * 119.99624 * 254.13478 * 15 13 12 17 17 O 1.21557 * 120.00695 * 0.02562 * 16 15 13 18 18 C 1.47887 * 120.00065 * 180.02562 * 16 15 13 19 19 C 1.38807 * 119.32919 * 180.02562 * 18 16 15 20 20 C 1.39861 * 118.37281 * 179.97438 * 19 18 16 21 21 C 1.41394 * 122.95644 * 179.97438 * 20 19 18 22 22 O 1.35220 * 120.99477 * 359.97438 * 21 20 19 23 23 N 1.32495 * 118.01324 * 180.02562 * 21 20 19 24 24 C 1.32362 * 121.48476 * 359.97438 * 23 21 20 25 25 N 1.31291 * 123.09899 * 0.02562 * 24 23 21 26 26 C 1.33699 * 120.36512 * 359.97438 * 25 24 23 27 27 C 1.40619 * 122.61591 * 179.97438 * 26 25 24 28 28 N 1.30919 * 120.15601 * 180.29931 * 27 26 25 29 29 C 1.53778 * 113.61282 * 204.99473 * 10 9 7 30 30 H 0.97005 * 120.00036 * 0.02562 * 1 2 3 31 31 H 0.96993 * 119.99917 * 359.97438 * 9 7 2 32 32 H 1.08997 * 113.61568 * 25.41574 * 12 10 9 33 33 H 1.08999 * 113.66877 * 254.45753 * 12 10 9 34 34 H 0.96999 * 119.99816 * 74.13871 * 15 13 12 35 35 H 1.08001 * 120.81374 * 359.97438 * 19 18 16 36 36 H 0.96704 * 114.00045 * 90.00391 * 22 21 20 37 37 H 1.08001 * 118.44645 * 179.97438 * 24 23 21 38 38 H 1.08002 * 119.91672 * 0.02562 * 27 26 25 39 39 H 1.08999 * 113.61188 * 105.47387 * 29 10 9 40 40 H 1.08998 * 113.69423 * 334.57836 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0659 -3.5639 -0.4030 12 6 2.0002 -4.4026 1.3473 13 6 1.8477 -5.6973 0.5315 14 1 2.7978 -6.1644 0.2722 15 7 0.8868 -6.6427 1.1053 16 6 1.3253 -7.7545 1.7281 17 8 2.5180 -7.9728 1.8141 18 6 0.3553 -8.7092 2.3068 19 6 0.8223 -9.8496 2.9456 20 6 -0.1124 -10.7386 3.4861 21 6 0.2554 -11.9283 4.1558 22 8 1.5552 -12.2688 4.3072 23 7 -0.7117 -12.7001 4.6297 24 6 -1.9872 -12.3765 4.4866 25 7 -2.3858 -11.2855 3.8745 26 6 -1.4923 -10.4354 3.3582 27 6 -1.8663 -9.2543 2.6931 28 7 -0.9506 -8.4587 2.2005 29 6 1.2607 -4.8290 -0.5938 30 1 -0.4850 0.8401 -0.0004 31 1 0.3557 -2.3880 0.0005 32 1 1.1224 -4.1572 1.9450 33 1 2.9286 -4.3517 1.9161 34 1 -0.0650 -6.4683 1.0369 35 1 1.8815 -10.0458 3.0233 36 1 1.9591 -11.9287 5.1174 37 1 -2.7353 -13.0418 4.8918 38 1 -2.9115 -9.0051 2.5845 39 1 1.5930 -5.1219 -1.5897 40 1 0.1801 -4.7017 -0.5285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023032187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = 45.576103 kcal Electronic energy + Delta-G solvation = -26131.021142 eV Core-core repulsion = 22140.770922 eV Total energy + Delta-G solvation = -3990.250219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.33237 -40.28672 -39.07672 -38.39753 -37.76296 -34.23300 -33.98201 -33.26928 -32.61540 -31.11113 -29.83824 -26.38192 -25.97077 -25.15127 -24.47561 -23.42464 -22.74156 -21.09149 -20.19510 -19.67542 -19.14720 -18.62272 -17.75872 -17.16075 -16.60418 -16.29189 -15.99527 -15.58164 -15.15424 -15.01620 -14.88933 -14.68690 -14.50017 -14.29517 -13.82162 -13.46798 -13.05751 -12.92463 -12.84076 -12.17985 -11.93089 -11.54136 -11.48609 -11.29098 -10.96301 -10.89059 -10.78871 -10.68519 -10.52439 -10.37167 -10.15771 -10.00497 -9.79015 -9.62463 -9.13995 -8.93114 -8.77900 -6.99926 -5.81405 -3.10329 -0.75289 -0.23110 0.90680 1.95604 2.48431 2.88316 2.95859 3.29052 3.41311 3.44047 3.44342 3.47444 3.49438 3.66074 3.90542 4.05034 4.44761 4.47674 4.57529 4.81190 4.95906 5.08366 5.10603 5.20018 5.34839 5.43630 5.45470 5.62979 5.84106 5.90962 6.08173 6.14629 6.24485 6.29384 6.44272 6.58186 6.58571 6.69270 6.97902 7.07972 7.31522 7.56239 7.68133 8.10312 8.36953 9.48464 10.05023 10.39548 11.40937 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.027847 B = 0.002020 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.259007 B =13860.971081 C =14415.580612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.170 3.830 11 H 0.081 0.919 12 C -0.176 4.176 13 C 0.114 3.886 14 H 0.111 0.889 15 N -0.689 5.689 16 C 0.568 3.432 17 O -0.536 6.536 18 C 0.058 3.942 19 C -0.047 4.047 20 C -0.162 4.162 21 C 0.423 3.577 22 O -0.464 6.464 23 N -0.536 5.536 24 C 0.330 3.670 25 N -0.494 5.494 26 C 0.130 3.870 27 C 0.160 3.840 28 N -0.428 5.428 29 C -0.158 4.158 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.411 0.589 35 H 0.165 0.835 36 H 0.419 0.581 37 H 0.209 0.791 38 H 0.188 0.812 39 H 0.068 0.932 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 -26.587 9.032 28.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.347 5.347 10 C 0.057 3.943 11 H 0.099 0.901 12 C -0.218 4.218 13 C 0.010 3.990 14 H 0.129 0.871 15 N -0.337 5.337 16 C 0.352 3.648 17 O -0.413 6.413 18 C -0.068 4.068 19 C -0.070 4.070 20 C -0.173 4.173 21 C 0.221 3.779 22 O -0.273 6.273 23 N -0.262 5.262 24 C 0.042 3.958 25 N -0.210 5.210 26 C -0.001 4.001 27 C -0.015 4.015 28 N -0.140 5.140 29 C -0.197 4.197 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.247 0.753 35 H 0.183 0.817 36 H 0.281 0.719 37 H 0.225 0.775 38 H 0.205 0.795 39 H 0.087 0.913 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.303 -26.514 8.394 28.007 hybrid contribution 0.544 0.786 0.651 1.156 sum -2.759 -25.728 9.045 27.411 Atomic orbital electron populations 1.69671 1.05137 1.25672 1.57515 1.24776 0.95552 0.97838 1.02777 0.86105 0.78840 0.83993 0.77177 1.20476 1.21843 1.21849 1.19359 0.91184 0.84123 1.42823 0.90909 1.42364 1.05727 0.99754 1.86904 1.21374 0.95501 0.84944 0.92520 0.90133 1.24381 1.01953 0.94852 1.00612 1.22631 0.93119 0.87423 0.95853 0.87124 1.45932 1.11443 1.21252 1.55119 1.17671 0.86985 0.81299 0.78817 1.90804 1.15409 1.75914 1.59223 1.21236 0.90500 0.95391 0.99722 1.22087 1.01596 0.91179 0.92153 1.19744 0.95919 0.97183 1.04461 1.19568 0.85682 0.85254 0.87393 1.84618 1.17665 1.77783 1.47230 1.68073 1.02094 1.33652 1.22340 1.24975 0.89839 0.91288 0.89745 1.68724 1.37114 1.04496 1.10689 1.20134 0.88241 0.96043 0.95687 1.23112 1.00111 0.86996 0.91297 1.67456 1.01071 1.30341 1.15089 1.23864 1.01410 0.97128 0.97338 0.93490 0.78042 0.90087 0.92106 0.75284 0.81707 0.71860 0.77466 0.79495 0.91334 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.71 -17.33 5.40 -52.55 -0.28 -17.61 16 10 C 0.17 3.24 4.48 -67.02 -0.30 2.94 16 11 H 0.08 1.53 8.10 -51.93 -0.42 1.10 16 12 C -0.18 -3.03 7.69 -25.82 -0.20 -3.23 16 13 C 0.11 1.69 4.21 -67.11 -0.28 1.41 16 14 H 0.11 1.66 7.50 -51.93 -0.39 1.27 16 15 N -0.69 -9.25 5.35 -53.94 -0.29 -9.54 16 16 C 0.57 7.85 7.80 -12.31 -0.10 7.75 16 17 O -0.54 -8.70 15.90 5.32 0.08 -8.62 16 18 C 0.06 0.66 6.74 -83.03 -0.56 0.10 16 19 C -0.05 -0.46 9.24 -38.76 -0.36 -0.81 16 20 C -0.16 -1.45 5.76 -106.71 -0.61 -2.07 16 21 C 0.42 3.37 7.91 -16.07 -0.13 3.25 16 22 O -0.46 -2.80 13.04 -17.36 -0.23 -3.03 16 23 N -0.54 -4.32 10.43 -14.23 -0.15 -4.47 16 24 C 0.33 2.23 12.21 -92.09 -1.12 1.11 16 25 N -0.49 -4.07 10.46 -12.54 -0.13 -4.20 16 26 C 0.13 1.17 6.64 -84.77 -0.56 0.61 16 27 C 0.16 1.37 11.26 -17.04 -0.19 1.18 16 28 N -0.43 -4.48 9.43 -9.47 -0.09 -4.57 16 29 C -0.16 -2.45 7.58 -25.92 -0.20 -2.64 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.39 9.95 7.92 -40.82 -0.32 9.62 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.41 5.04 8.01 -40.82 -0.33 4.71 16 35 H 0.17 1.47 7.38 -52.49 -0.39 1.08 16 36 H 0.42 0.35 9.06 45.56 0.41 0.77 16 37 H 0.21 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.19 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -34.49 353.68 -8.43 -42.92 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -3.51 Total: 11.37 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -4.86 Total: 2.30 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -0.22 Total: -67.41 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.14 Total: -11.64 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.49 -8.43 -42.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023032187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.494 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds