Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99832 * 2 1 4 4 H 1.48498 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47200 * 299.99752 * 3 2 1 6 6 H 1.48495 * 109.47535 * 59.99883 * 3 2 1 7 7 C 1.38807 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00058 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.47583 * 134.49379 * 180.02562 * 9 7 2 11 11 C 1.53943 * 86.11825 * 155.36000 * 10 9 7 12 12 C 1.52998 * 113.74133 * 137.95422 * 11 10 9 13 13 N 1.46503 * 109.47219 * 176.92606 * 12 11 10 14 14 C 1.34771 * 119.99988 * 179.97438 * 13 12 11 15 15 O 1.21534 * 120.00242 * 0.02562 * 14 13 12 16 16 C 1.48015 * 119.99770 * 179.97438 * 14 13 12 17 17 C 1.39425 * 119.65215 * 180.02562 * 16 14 13 18 18 C 1.38367 * 119.13859 * 179.76597 * 17 16 14 19 19 C 1.39274 * 118.43329 * 0.45506 * 18 17 16 20 20 N 1.39983 * 120.39032 * 179.79959 * 19 18 17 21 21 C 1.35131 * 127.39414 * 184.71913 * 20 19 18 22 22 N 1.30717 * 107.26584 * 180.30009 * 21 20 19 23 23 N 1.28422 * 110.65337 * 359.55561 * 22 21 20 24 24 N 1.28954 * 110.21741 * 0.45699 * 23 22 21 25 25 C 1.39237 * 119.21693 * 359.52377 * 19 18 17 26 26 N 1.31398 * 120.80728 * 0.25039 * 25 19 18 27 27 C 1.47812 * 134.45561 * 359.87224 * 9 7 2 28 28 H 0.97002 * 119.99975 * 0.02562 * 1 2 3 29 29 H 1.09001 * 113.76646 * 41.05462 * 10 9 7 30 30 H 1.08999 * 113.76725 * 269.66322 * 10 9 7 31 31 H 1.09000 * 113.74156 * 269.15771 * 11 10 9 32 32 H 1.08992 * 109.47229 * 56.92367 * 12 11 10 33 33 H 1.09005 * 109.46955 * 296.92539 * 12 11 10 34 34 H 0.97001 * 119.99565 * 0.02562 * 13 12 11 35 35 H 1.08008 * 120.42865 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.78784 * 180.22905 * 18 17 16 37 37 H 1.08002 * 126.36454 * 0.03300 * 21 20 19 38 38 H 1.08004 * 119.59688 * 180.27746 * 25 19 18 39 39 H 1.09003 * 113.76689 * 90.38246 * 27 9 7 40 40 H 1.08997 * 113.83835 * 318.91042 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3470 -4.0830 0.6398 12 6 -0.3635 -5.3136 0.0728 13 7 -1.6201 -5.5279 0.7948 14 6 -2.4193 -6.5616 0.4644 15 8 -2.0973 -7.3163 -0.4321 16 6 -3.6887 -6.7783 1.1943 17 6 -4.5097 -7.8503 0.8468 18 6 -5.6915 -8.0458 1.5394 19 6 -6.0201 -7.1523 2.5560 20 7 -7.2077 -7.3091 3.2801 21 6 -7.7065 -6.4841 4.2269 22 7 -8.8274 -7.0090 4.6476 23 7 -9.0761 -8.1045 4.0253 24 7 -8.1372 -8.3593 3.1789 25 6 -5.1504 -6.1047 2.8474 26 7 -4.0332 -5.9502 2.1732 27 6 -0.1058 -2.7570 0.0023 28 1 -0.4850 0.8401 -0.0004 29 1 2.5624 -4.0324 0.6546 30 1 1.8319 -4.2350 -0.9981 31 1 0.3594 -4.0639 1.7296 32 1 0.2762 -6.1884 0.1894 33 1 -0.5745 -5.1562 -0.9850 34 1 -1.8773 -4.9253 1.5101 35 1 -4.2248 -8.5218 0.0503 36 1 -6.3457 -8.8697 1.2949 37 1 -7.2598 -5.5644 4.5748 38 1 -5.3969 -5.4109 3.6375 39 1 -0.5318 -2.8718 -0.9944 40 1 -0.7184 -2.1403 0.6598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031874210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = 190.395548 kcal Electronic energy + Delta-G solvation = -25918.138940 eV Core-core repulsion = 21966.461314 eV Total energy + Delta-G solvation = -3951.677626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.81369 -41.26165 -39.42485 -38.01922 -36.14725 -34.66625 -33.28356 -32.70012 -32.23552 -31.29557 -28.94743 -26.74409 -25.57383 -25.24615 -24.83601 -23.52340 -22.84567 -22.06534 -20.96888 -19.50286 -19.33409 -18.05289 -17.40141 -17.22586 -16.81944 -16.73705 -15.77995 -15.68408 -15.42217 -14.99404 -14.73313 -14.47381 -14.23971 -14.03194 -13.73391 -13.44957 -13.32883 -13.04125 -12.90985 -12.58221 -12.36903 -11.64558 -11.47707 -11.38643 -11.11799 -11.05131 -10.81636 -10.71808 -10.62967 -10.60672 -10.19147 -9.86559 -9.81458 -9.58576 -9.48867 -8.96568 -8.84333 -6.92149 -5.81059 -3.13238 -0.62236 0.39935 0.71358 1.03985 1.67384 2.33960 2.89259 3.27566 3.32293 3.35895 3.41464 3.42876 3.43867 3.61580 3.81217 4.14236 4.28940 4.34940 4.41480 4.68501 4.73355 4.88730 5.05983 5.10157 5.23512 5.24343 5.31266 5.48645 5.58710 5.75893 5.81524 5.93485 6.14985 6.27432 6.43024 6.56393 6.66337 6.89346 7.17350 7.30094 7.47237 7.51527 7.77651 7.94021 8.03562 9.00760 9.66909 10.55264 11.36167 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.017957 B = 0.002098 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.905350 B =13342.836968 C =14660.386198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.129 3.871 11 C -0.154 4.154 12 C 0.127 3.873 13 N -0.695 5.695 14 C 0.564 3.436 15 O -0.533 6.533 16 C 0.096 3.904 17 C -0.089 4.089 18 C -0.062 4.062 19 C 0.092 3.908 20 N -0.328 5.328 21 C 0.234 3.766 22 N -0.326 5.326 23 N -0.029 5.029 24 N -0.074 5.074 25 C 0.112 3.888 26 N -0.427 5.427 27 C 0.168 3.832 28 H 0.253 0.747 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.413 0.587 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.245 0.755 38 H 0.175 0.825 39 H 0.027 0.973 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.932 -15.713 7.152 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.174 4.174 12 C 0.003 3.997 13 N -0.344 5.344 14 C 0.347 3.653 15 O -0.409 6.409 16 C -0.043 4.043 17 C -0.110 4.110 18 C -0.090 4.090 19 C -0.004 4.004 20 N -0.119 5.119 21 C -0.063 4.063 22 N -0.174 5.174 23 N -0.024 5.024 24 N -0.059 5.059 25 C -0.052 4.052 26 N -0.137 5.137 27 C 0.043 3.957 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.184 0.816 36 H 0.178 0.822 37 H 0.261 0.739 38 H 0.192 0.808 39 H 0.045 0.955 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.113 -16.163 6.746 21.879 hybrid contribution 0.464 1.212 -0.097 1.301 sum -12.648 -14.951 6.649 20.681 Atomic orbital electron populations 1.69823 1.05004 1.25225 1.56847 1.24788 0.95706 0.97556 1.02513 0.86045 0.78758 0.83683 0.77268 1.20453 1.21753 1.21693 1.19077 0.90328 0.81973 1.43582 0.90174 1.45984 1.02452 0.99305 1.86160 1.22487 0.93905 0.86493 0.96896 1.23825 0.98249 0.94586 1.00712 1.21600 0.83147 0.98451 0.96489 1.45953 1.21724 1.28797 1.37973 1.17666 0.82603 0.81965 0.83056 1.90818 1.73367 1.46191 1.30563 1.21574 0.96273 0.92586 0.93858 1.22165 0.92086 0.97335 0.99432 1.21480 0.96966 0.98248 0.92269 1.18914 0.85403 1.00036 0.96013 1.48966 1.17372 1.17492 1.28043 1.27642 0.91955 0.98472 0.88200 1.74545 1.14126 1.05169 1.23573 1.78132 1.15628 1.07566 1.01125 1.82719 0.96369 1.07281 1.19501 1.22688 0.88730 0.94789 0.98998 1.67748 1.15224 1.25720 1.05029 1.22357 0.88138 0.88420 0.96772 0.93708 0.93589 0.94596 0.89040 0.91442 0.90911 0.75021 0.81644 0.82181 0.73899 0.80809 0.95489 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 11.39 55.49 0.63 -26.09 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.21 3.70 -177.70 -0.66 -15.87 16 10 C 0.13 2.47 8.51 -2.97 -0.03 2.44 16 11 C -0.15 -2.58 3.93 -89.70 -0.35 -2.93 16 12 C 0.13 1.80 5.51 -4.04 -0.02 1.77 16 13 N -0.69 -8.82 5.54 -61.20 -0.34 -9.16 16 14 C 0.56 7.15 7.81 -12.25 -0.10 7.05 16 15 O -0.53 -8.12 16.31 5.34 0.09 -8.04 16 16 C 0.10 0.94 6.75 -83.01 -0.56 0.38 16 17 C -0.09 -0.69 9.62 -39.09 -0.38 -1.06 16 18 C -0.06 -0.40 9.81 -39.15 -0.38 -0.79 16 19 C 0.09 0.59 6.73 -83.38 -0.56 0.03 16 20 N -0.33 -2.30 3.85 -11.59 -0.04 -2.35 16 21 C 0.23 1.26 12.16 -90.11 -1.10 0.17 16 22 N -0.33 -2.95 12.15 29.65 0.36 -2.59 16 23 N -0.03 -0.31 13.39 60.35 0.81 0.49 16 24 N -0.07 -0.71 13.41 60.35 0.81 0.10 16 25 C 0.11 0.65 10.65 -17.37 -0.19 0.47 16 26 N -0.43 -3.70 9.53 -9.66 -0.09 -3.79 16 27 C 0.17 3.71 7.08 -2.85 -0.02 3.69 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.12 7.88 -51.93 -0.41 0.71 16 34 H 0.41 4.86 7.79 -40.82 -0.32 4.54 16 35 H 0.17 1.16 7.63 -52.48 -0.40 0.75 16 36 H 0.16 0.85 7.85 -52.49 -0.41 0.44 16 37 H 0.25 -0.04 7.23 -52.49 -0.38 -0.42 16 38 H 0.17 0.35 6.92 -52.48 -0.36 -0.02 16 39 H 0.03 0.62 7.92 -51.93 -0.41 0.21 16 40 H 0.07 1.78 7.17 -51.93 -0.37 1.41 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -35.14 353.95 -6.36 -41.50 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.30 Total: -0.90 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -3.94 Total: 4.60 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 1.48 Total: -59.24 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.14 -6.36 -41.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031874210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.899 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds