Wall clock time and date at job start Tue Mar 31 2020 05:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48501 * 109.46787 * 274.98327 * 3 2 1 5 5 H 1.48492 * 109.47311 * 34.98572 * 3 2 1 6 6 H 1.48497 * 109.46978 * 154.98807 * 3 2 1 7 7 C 1.38810 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00130 * 186.43135 * 7 2 1 9 9 N 1.36935 * 119.99840 * 6.42351 * 7 2 1 10 10 C 1.47869 * 126.94597 * 353.68685 * 9 7 2 11 11 C 1.58440 * 104.83054 * 182.30129 * 10 9 7 12 12 H 1.09002 * 116.62301 * 159.51493 * 11 10 9 13 13 C 1.57433 * 99.62185 * 32.32550 * 11 10 9 14 14 C 1.49299 * 126.94460 * 173.68261 * 9 7 2 15 15 H 1.08997 * 116.14855 * 15.84357 * 14 9 7 16 16 C 1.56019 * 104.09082 * 246.70101 * 14 9 7 17 17 N 1.47864 * 105.10391 * 287.91768 * 16 14 9 18 18 C 1.34780 * 126.94412 * 181.97668 * 17 16 14 19 19 O 1.21689 * 119.99884 * 180.02562 * 18 17 16 20 20 C 1.46816 * 120.00158 * 0.03398 * 18 17 16 21 21 C 1.41301 * 126.49730 * 359.96776 * 20 18 17 22 22 N 1.30381 * 108.46006 * 180.02562 * 21 20 18 23 23 N 1.39987 * 109.30742 * 0.02562 * 22 21 20 24 24 C 1.35990 * 108.16752 * 359.97438 * 23 22 21 25 25 N 1.37177 * 120.55354 * 179.97438 * 24 23 22 26 26 H 0.96994 * 119.88312 * 179.97438 * 25 24 23 27 27 C 1.36354 * 120.24052 * 0.02562 * 25 24 23 28 28 C 1.35239 * 119.83113 * 359.97438 * 27 25 24 29 29 C 1.34849 * 131.92794 * 179.71676 * 23 22 21 30 30 O 1.21821 * 120.11431 * 0.28588 * 29 23 22 31 31 H 0.96995 * 119.99919 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.31651 * 300.89977 * 10 9 7 33 33 H 1.09000 * 110.31984 * 62.98905 * 10 9 7 34 34 H 1.09006 * 112.52898 * 192.40832 * 13 11 10 35 35 H 1.09001 * 112.31795 * 64.87374 * 13 11 10 36 36 H 1.09002 * 110.31453 * 169.01212 * 16 14 9 37 37 H 1.08998 * 110.40481 * 46.87196 * 16 14 9 38 38 H 1.07994 * 125.77363 * 0.02562 * 21 20 18 39 39 H 1.07999 * 120.08342 * 179.97438 * 27 25 24 40 40 H 1.07998 * 120.15273 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0852 -1.2051 0.1042 9 7 1.3321 -2.3842 -0.1337 10 6 -0.1348 -2.5696 -0.1565 11 6 -0.3438 -4.1361 -0.2702 12 1 -1.3153 -4.5228 0.0377 13 6 0.9163 -4.6288 0.5348 14 6 1.9242 -3.7463 -0.2854 15 1 2.9784 -3.8434 -0.0261 16 6 1.5272 -4.1741 -1.7324 17 7 0.0756 -4.4482 -1.6685 18 6 -0.7110 -4.8857 -2.6717 19 8 -1.8982 -5.0699 -2.4778 20 6 -0.1357 -5.1402 -3.9982 21 6 1.2161 -4.9732 -4.3741 22 7 1.3385 -5.2987 -5.6307 23 7 0.0907 -5.6884 -6.1314 24 6 -0.8191 -5.5912 -5.1254 25 7 -2.1347 -5.9147 -5.3412 26 1 -2.7753 -5.8421 -4.6165 27 6 -2.5448 -6.3389 -6.5704 28 6 -1.6507 -6.4402 -7.5800 29 6 -0.3004 -6.1021 -7.3539 30 8 0.5114 -6.1906 -8.2579 31 1 -0.4850 0.8400 0.0004 32 1 -0.5777 -2.1971 0.7672 33 1 -0.5676 -2.0582 -1.0162 34 1 1.1014 -5.6956 0.4088 35 1 0.8741 -4.3424 1.5856 36 1 2.0698 -5.0737 -2.0233 37 1 1.7294 -3.3668 -2.4363 38 1 2.0133 -4.6334 -3.7296 39 1 -3.5810 -6.5933 -6.7374 40 1 -1.9698 -6.7760 -8.5556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032670682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:13 Heat of formation + Delta-G solvation = 112.748033 kcal Electronic energy + Delta-G solvation = -28211.324442 eV Core-core repulsion = 24223.987016 eV Total energy + Delta-G solvation = -3987.337426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.86986 -40.11826 -39.00021 -38.22371 -37.61617 -33.78291 -33.05180 -31.86155 -31.46834 -29.82506 -28.83263 -28.56719 -25.39906 -24.64854 -24.53915 -23.56522 -22.18679 -20.81863 -19.95652 -19.35601 -18.58953 -18.45071 -17.40305 -17.17957 -16.85147 -16.52831 -15.75662 -15.57669 -15.10196 -14.59830 -14.18181 -13.97349 -13.87398 -13.81492 -13.67717 -13.39543 -13.29570 -13.07834 -12.11658 -11.97595 -11.70758 -11.43046 -11.24589 -11.05746 -10.92228 -10.81353 -10.70077 -10.61308 -10.29893 -10.22228 -10.11761 -9.75021 -9.72961 -9.65051 -8.73813 -8.37294 -7.99340 -6.97521 -5.83115 -3.16793 0.55179 0.76841 1.69799 2.03798 2.28553 3.04150 3.22904 3.35420 3.40779 3.43072 3.54345 3.84809 4.22224 4.38154 4.45734 4.52630 4.82211 4.90679 5.07046 5.11043 5.17736 5.24851 5.30148 5.50747 5.53804 5.63439 5.79694 5.84885 6.03212 6.07631 6.22599 6.32580 6.41844 6.44778 6.52190 6.61092 6.68184 6.86662 7.34183 7.45536 7.62301 7.67505 7.97352 8.04951 8.44302 9.05086 9.66249 10.34997 11.29389 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.003420 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.796321 B = 8184.774731 C = 8673.244110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.175 3.825 11 C 0.099 3.901 12 H 0.116 0.884 13 C -0.152 4.152 14 C 0.142 3.858 15 H 0.108 0.892 16 C 0.072 3.928 17 N -0.595 5.595 18 C 0.612 3.388 19 O -0.575 6.575 20 C -0.292 4.292 21 C 0.120 3.880 22 N -0.266 5.266 23 N -0.358 5.358 24 C 0.364 3.636 25 N -0.586 5.586 26 H 0.447 0.553 27 C 0.190 3.810 28 C -0.310 4.310 29 C 0.564 3.436 30 O -0.492 6.492 31 H 0.254 0.746 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.216 0.784 39 H 0.191 0.809 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 -14.576 -7.246 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.100 0.900 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.004 4.004 12 H 0.134 0.866 13 C -0.191 4.191 14 C 0.033 3.967 15 H 0.125 0.875 16 C -0.053 4.053 17 N -0.326 5.326 18 C 0.402 3.598 19 O -0.458 6.458 20 C -0.309 4.309 21 C -0.070 4.070 22 N -0.082 5.082 23 N -0.158 5.158 24 C 0.140 3.860 25 N -0.204 5.204 26 H 0.290 0.710 27 C 0.061 3.939 28 C -0.339 4.339 29 C 0.362 3.638 30 O -0.363 6.363 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.208 0.792 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.815 -14.597 -8.882 17.752 hybrid contribution -0.437 1.151 0.792 1.464 sum -5.253 -13.446 -8.090 16.548 Atomic orbital electron populations 1.69910 1.05012 1.25400 1.56028 1.24831 0.95653 0.97745 1.01780 0.86123 0.78702 0.83519 0.77548 1.21584 1.21784 1.20514 1.19052 0.91050 0.82093 1.43942 0.90032 1.45219 1.01342 1.00429 1.85090 1.22407 0.84756 0.86667 1.01175 1.24919 0.97683 0.99001 0.78750 0.86623 1.24202 0.96632 0.98510 0.99773 1.23174 0.96721 0.86516 0.90295 0.87459 1.23646 0.80203 0.98975 1.02490 1.48834 1.09731 1.63231 1.10793 1.16358 0.84939 0.76706 0.81771 1.90685 1.15119 1.56608 1.83360 1.19555 0.93910 1.23014 0.94461 1.25011 0.96318 0.93310 0.92362 1.77627 0.97332 1.21675 1.11592 1.48094 1.06923 1.50805 1.09996 1.18698 0.82104 0.95225 0.89989 1.41138 1.06558 1.59281 1.13437 0.70988 1.22433 1.00877 0.88034 0.82526 1.21652 0.90636 1.18863 1.02776 1.17142 0.90038 0.77314 0.79301 1.90910 1.54661 1.50107 1.40663 0.93557 0.92998 0.92947 0.91390 0.89699 0.92213 0.90370 0.76766 0.79228 0.80405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.91 10.60 55.49 0.59 -25.32 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 21.23 29.56 -169.99 -5.02 16.21 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.23 -5.96 10.36 -15.06 -0.16 -6.11 16 8 H 0.08 1.98 7.84 -52.48 -0.41 1.57 16 9 N -0.60 -13.51 3.03 -154.75 -0.47 -13.98 16 10 C 0.18 3.95 4.89 -0.29 0.00 3.95 16 11 C 0.10 1.74 5.35 -60.96 -0.33 1.42 16 12 H 0.12 1.96 8.05 -51.93 -0.42 1.54 16 13 C -0.15 -2.32 6.86 -22.10 -0.15 -2.47 16 14 C 0.14 2.41 5.47 -62.55 -0.34 2.06 16 15 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 16 C 0.07 1.11 4.36 -1.68 -0.01 1.10 16 17 N -0.60 -10.05 2.95 -156.53 -0.46 -10.52 16 18 C 0.61 10.35 7.87 -12.79 -0.10 10.25 16 19 O -0.58 -10.43 16.15 5.20 0.08 -10.34 16 20 C -0.29 -4.40 6.12 -104.86 -0.64 -5.04 16 21 C 0.12 1.74 10.57 -17.00 -0.18 1.56 16 22 N -0.27 -4.36 12.54 30.85 0.39 -3.97 16 23 N -0.36 -5.46 3.79 -13.82 -0.05 -5.52 16 24 C 0.36 4.93 7.78 -153.53 -1.20 3.73 16 25 N -0.59 -5.37 5.39 -11.73 -0.06 -5.43 16 26 H 0.45 3.68 7.78 -40.82 -0.32 3.36 16 27 C 0.19 1.10 11.25 -16.61 -0.19 0.91 16 28 C -0.31 -2.67 9.95 -39.60 -0.39 -3.06 16 29 C 0.56 8.12 7.70 -15.17 -0.12 8.00 16 30 O -0.49 -8.82 17.90 5.08 0.09 -8.73 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.05 1.30 7.64 -51.93 -0.40 0.90 16 33 H 0.05 1.38 7.53 -51.93 -0.39 0.99 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 0.72 6.90 -51.93 -0.36 0.36 16 37 H 0.08 1.32 7.18 -51.93 -0.37 0.95 16 38 H 0.22 2.63 4.54 -52.49 -0.24 2.39 16 39 H 0.19 0.04 8.06 -52.49 -0.42 -0.38 16 40 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -35.79 333.53 -7.94 -43.73 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.15 Total: 2.74 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: -3.89 Total: 16.11 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.07 Total: -64.73 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.17 Total: -19.07 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.79 -7.94 -43.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032670682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.475 kcal (2) G-P(sol) polarization free energy of solvation -35.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds