Wall clock time and date at job start Tue Mar 31 2020 04:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.47064 * 126.29828 * 2 1 4 4 C 1.54071 * 110.10768 * 151.00295 * 3 2 1 5 5 C 1.55605 * 104.29032 * 45.20155 * 4 3 2 6 6 H 1.08993 * 111.16804 * 79.99384 * 5 4 3 7 7 C 1.50704 * 111.16119 * 204.21638 * 5 4 3 8 8 O 1.21280 * 120.00479 * 34.99995 * 7 5 4 9 9 N 1.34780 * 120.00056 * 215.00035 * 7 5 4 10 10 C 1.47869 * 126.94137 * 359.97438 * 9 7 5 11 11 C 1.56014 * 105.19076 * 181.94778 * 10 9 7 12 12 H 1.09008 * 116.24964 * 159.73024 * 11 10 9 13 13 C 1.57352 * 99.49180 * 32.81532 * 11 10 9 14 14 C 1.49287 * 126.94665 * 179.97438 * 9 7 5 15 15 H 1.09000 * 116.15183 * 15.83953 * 14 9 7 16 16 C 1.56022 * 104.08971 * 246.69994 * 14 9 7 17 17 N 1.47869 * 105.10199 * 288.76550 * 16 14 9 18 18 C 1.36939 * 126.94358 * 182.03267 * 17 16 14 19 19 H 1.08003 * 120.00360 * 173.64652 * 18 17 16 20 20 C 1.38812 * 120.00002 * 353.64028 * 18 17 16 21 21 N 1.31620 * 120.00221 * 6.40220 * 20 18 17 22 22 Si 1.86799 * 119.99984 * 186.39988 * 20 18 17 23 23 H 1.48503 * 109.47089 * 94.98849 * 22 20 18 24 24 H 1.48503 * 109.47001 * 214.98513 * 22 20 18 25 25 H 1.48499 * 109.47508 * 334.98534 * 22 20 18 26 26 S 1.66995 * 126.30168 * 180.02562 * 2 1 3 27 27 O 1.42103 * 105.13344 * 68.57051 * 26 2 1 28 28 O 1.42101 * 105.13589 * 298.89476 * 26 2 1 29 29 H 1.08993 * 109.47283 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.46576 * 119.97490 * 1 2 3 31 31 H 1.09000 * 109.47554 * 239.97393 * 1 2 3 32 32 H 1.09005 * 109.35732 * 30.82410 * 3 2 1 33 33 H 1.08998 * 109.35891 * 271.18411 * 3 2 1 34 34 H 1.09003 * 110.46249 * 286.50225 * 4 3 2 35 35 H 1.08995 * 110.46707 * 163.90286 * 4 3 2 36 36 H 1.08999 * 110.31458 * 300.90656 * 10 9 7 37 37 H 1.09000 * 110.31665 * 62.99129 * 10 9 7 38 38 H 1.08994 * 112.35638 * 191.72163 * 13 11 10 39 39 H 1.08994 * 112.37312 * 64.28376 * 13 11 10 40 40 H 1.09000 * 110.31898 * 47.67569 * 16 14 9 41 41 H 1.09004 * 110.31838 * 169.86249 * 16 14 9 42 42 H 0.96999 * 120.00355 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3356 1.1853 0.0000 4 6 3.6691 0.8630 0.7014 5 6 4.0864 -0.5176 0.1174 6 1 4.5445 -0.4071 -0.8654 7 6 5.0025 -1.2531 1.0613 8 8 4.8489 -1.1490 2.2598 9 7 5.9925 -2.0267 0.5736 10 6 6.3167 -2.2628 -0.8497 11 6 7.5096 -3.2682 -0.8359 12 1 7.6780 -3.8292 -1.7553 13 6 7.1407 -4.0909 0.4537 14 6 6.9835 -2.8183 1.3611 15 1 6.7418 -2.9822 2.4112 16 6 8.3471 -2.1193 1.0677 17 7 8.6607 -2.4604 -0.3365 18 6 9.7817 -2.1064 -1.0388 19 1 9.9454 -2.5024 -2.0302 20 6 10.7077 -1.2385 -0.4766 21 7 10.5748 -0.8550 0.7754 22 14 12.1427 -0.6147 -1.4970 23 1 11.7947 0.7031 -2.0869 24 1 13.3397 -0.4685 -0.6305 25 1 12.4343 -1.5825 -2.5849 26 16 2.4537 -1.3458 -0.0006 27 8 2.2694 -1.9410 -1.2778 28 8 2.1392 -2.0378 1.2000 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5135 -0.8903 31 1 -0.3634 -0.5142 0.8897 32 1 1.8377 1.9993 0.5270 33 1 2.5324 1.4890 -1.0281 34 1 3.5253 0.7931 1.7796 35 1 4.4172 1.6192 0.4637 36 1 5.4608 -2.6981 -1.3655 37 1 6.6132 -1.3304 -1.3300 38 1 7.9560 -4.7358 0.7814 39 1 6.2052 -4.6392 0.3425 40 1 8.2515 -1.0396 1.1826 41 1 9.1205 -2.5043 1.7324 42 1 11.2220 -0.2488 1.1684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032676642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:26 Heat of formation + Delta-G solvation = -22.592734 kcal Electronic energy + Delta-G solvation = -27663.177829 eV Core-core repulsion = 23773.122787 eV Total energy + Delta-G solvation = -3890.055042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.28428 -38.43231 -37.21647 -37.09604 -36.05037 -33.79154 -33.23486 -31.63966 -29.34823 -28.68490 -27.76522 -25.75614 -25.28201 -23.71287 -22.56674 -20.82706 -20.01205 -19.23378 -18.53523 -17.84917 -17.32051 -17.07165 -16.40220 -16.06369 -15.56458 -15.30997 -14.94727 -14.70004 -14.36644 -14.04873 -13.64683 -13.51286 -13.40650 -13.19448 -13.03465 -12.48177 -12.21899 -12.14499 -12.10980 -12.02473 -11.75883 -11.65064 -11.43847 -11.38744 -11.09309 -10.96829 -10.86009 -10.74583 -10.66473 -10.32717 -10.13556 -9.81124 -9.68490 -9.31073 -8.76253 -8.19306 -7.00301 -5.85122 -3.19219 -0.11970 2.24526 2.69681 3.00525 3.32571 3.38053 3.40589 3.41956 3.63432 4.13226 4.21274 4.35821 4.49653 4.66146 4.83513 4.93411 5.01608 5.09067 5.23945 5.26488 5.28842 5.38413 5.43950 5.48624 5.52945 5.58653 5.68357 5.70605 5.81002 6.04667 6.15964 6.22253 6.32496 6.35079 6.51482 6.56586 7.31286 7.41884 7.64383 7.83222 8.02211 8.25568 9.02628 9.63733 10.32555 11.27408 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021553 B = 0.003653 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.821857 B = 7663.739367 C = 7983.344247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.999 5.999 3 C 0.081 3.919 4 C -0.110 4.110 5 C -0.591 4.591 6 H 0.162 0.838 7 C 0.551 3.449 8 O -0.524 6.524 9 N -0.600 5.600 10 C 0.069 3.931 11 C 0.143 3.857 12 H 0.111 0.889 13 C -0.153 4.153 14 C 0.098 3.902 15 H 0.119 0.881 16 C 0.173 3.827 17 N -0.597 5.597 18 C -0.235 4.235 19 H 0.082 0.918 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 S 2.591 3.409 27 O -0.948 6.948 28 O -0.934 6.934 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 2.634 -2.939 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.843 5.843 3 C -0.044 4.044 4 C -0.149 4.149 5 C -0.702 4.702 6 H 0.180 0.820 7 C 0.335 3.665 8 O -0.401 6.401 9 N -0.333 5.333 10 C -0.056 4.056 11 C 0.034 3.966 12 H 0.129 0.871 13 C -0.193 4.193 14 C -0.004 4.004 15 H 0.137 0.863 16 C 0.048 3.952 17 N -0.321 5.321 18 C -0.362 4.362 19 H 0.100 0.900 20 C -0.201 4.201 21 N -0.563 5.563 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 S 2.683 3.317 27 O -0.937 6.937 28 O -0.923 6.923 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.455 1.938 -2.295 17.712 hybrid contribution 1.224 1.292 -0.644 1.892 sum -16.231 3.230 -2.939 16.808 Atomic orbital electron populations 1.21277 0.75813 1.03485 1.01536 1.57140 1.13809 1.21431 1.91877 1.22144 0.89772 0.90572 1.01954 1.22698 0.96270 0.93159 1.02805 1.30931 1.19481 1.10579 1.09212 0.82007 1.18379 0.80926 0.79584 0.87612 1.90730 1.71401 1.63355 1.14609 1.49202 1.29428 1.45336 1.09349 1.23531 0.99175 1.02048 0.80859 1.23228 0.86537 0.90784 0.96036 0.87079 1.24245 1.01133 0.96122 0.97765 1.24482 0.89118 0.91006 0.95790 0.86324 1.21965 0.89295 0.97947 0.85982 1.45252 1.17416 1.60298 1.09136 1.19065 0.96511 1.22275 0.98389 0.90032 1.24848 0.99247 0.99526 0.96434 1.69924 1.37337 1.37506 1.11554 0.86108 0.81656 0.78915 0.79106 1.21630 1.21739 1.20520 1.06085 0.76794 0.73600 0.75196 1.93614 1.83691 1.74302 1.42143 1.93637 1.80818 1.70569 1.47308 0.90105 0.92080 0.91957 0.88528 0.90463 0.87243 0.86527 0.92411 0.90367 0.89320 0.91347 0.92967 0.92665 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.98 11.40 59.85 0.68 1.66 16 2 N -1.00 -10.53 3.72 -120.70 -0.45 -10.98 16 3 C 0.08 0.65 6.81 -3.18 -0.02 0.63 16 4 C -0.11 -1.14 6.19 -24.79 -0.15 -1.29 16 5 C -0.59 -7.93 3.43 -26.49 -0.09 -8.02 16 6 H 0.16 1.82 7.15 -51.93 -0.37 1.45 16 7 C 0.55 9.90 6.80 -10.98 -0.07 9.83 16 8 O -0.52 -10.86 16.43 5.56 0.09 -10.77 16 9 N -0.60 -11.01 2.95 -156.78 -0.46 -11.47 16 10 C 0.07 1.16 5.49 -1.68 -0.01 1.15 16 11 C 0.14 2.59 5.54 -62.43 -0.35 2.25 16 12 H 0.11 1.78 8.14 -51.92 -0.42 1.36 16 13 C -0.15 -2.56 6.81 -22.14 -0.15 -2.71 16 14 C 0.10 1.87 5.24 -62.55 -0.33 1.54 16 15 H 0.12 2.19 8.05 -51.93 -0.42 1.77 16 16 C 0.17 4.03 4.77 -1.67 -0.01 4.02 16 17 N -0.60 -13.90 3.02 -156.21 -0.47 -14.38 16 18 C -0.23 -6.05 10.36 -15.06 -0.16 -6.21 16 19 H 0.08 2.01 7.84 -52.48 -0.41 1.60 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 21 N -0.92 -26.01 10.61 55.49 0.59 -25.42 16 22 Si 0.91 21.16 29.56 -169.99 -5.02 16.14 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 S 2.59 36.75 5.83 -107.50 -0.63 36.13 16 27 O -0.95 -15.10 18.14 -57.41 -1.04 -16.15 16 28 O -0.93 -16.59 17.75 -57.41 -1.02 -17.60 16 29 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.11 1.28 7.35 -51.93 -0.38 0.89 16 35 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.39 7.53 -51.93 -0.39 1.00 16 41 H 0.06 1.41 7.64 -51.93 -0.40 1.01 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -35.59 350.93 -10.03 -45.61 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.15 Total: 0.94 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.75 Total: 2.66 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -0.79 Total: -62.25 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -1.97 Total: -44.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 36.75 SS G_CDS: -0.63 Total: 36.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.59 -10.03 -45.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032676642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.021 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds