Wall clock time and date at job start Tue Mar 31 2020 04:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47067 * 126.30014 * 2 1 4 4 C 1.54121 * 110.13540 * 208.96135 * 3 2 1 5 5 C 1.55601 * 104.27292 * 314.86130 * 4 3 2 6 6 H 1.08997 * 111.16529 * 279.97368 * 5 4 3 7 7 C 1.50700 * 111.16370 * 155.75164 * 5 4 3 8 8 O 1.21288 * 120.00167 * 333.60141 * 7 5 4 9 9 N 1.34780 * 120.00238 * 153.60634 * 7 5 4 10 10 C 1.47861 * 126.94131 * 359.97022 * 9 7 5 11 11 C 1.56014 * 105.10513 * 182.02372 * 10 9 7 12 12 H 1.09001 * 116.25184 * 159.68427 * 11 10 9 13 13 C 1.57088 * 99.60715 * 32.80707 * 11 10 9 14 14 C 1.49286 * 126.94697 * 179.97438 * 9 7 5 15 15 H 1.09000 * 116.15100 * 15.81840 * 14 9 7 16 16 C 1.55998 * 104.31976 * 246.59450 * 14 9 7 17 17 N 1.47869 * 105.11250 * 289.11423 * 16 14 9 18 18 C 1.36936 * 126.94063 * 181.87658 * 17 16 14 19 19 H 1.08002 * 119.99803 * 169.04630 * 18 17 16 20 20 C 1.38809 * 120.00205 * 349.03792 * 18 17 16 21 21 N 1.31626 * 119.99929 * 166.73720 * 20 18 17 22 22 Si 1.86795 * 120.00207 * 346.73680 * 20 18 17 23 23 H 1.48498 * 109.46916 * 65.40571 * 22 20 18 24 24 H 1.48497 * 109.47031 * 305.41061 * 22 20 18 25 25 H 1.48496 * 109.47432 * 185.40885 * 22 20 18 26 26 S 1.67001 * 126.30102 * 179.97438 * 2 1 3 27 27 O 1.42102 * 105.13479 * 61.10902 * 26 2 1 28 28 O 1.42105 * 105.13303 * 291.43554 * 26 2 1 29 29 H 1.08993 * 109.47210 * 270.04349 * 1 2 3 30 30 H 1.09004 * 109.47179 * 30.04769 * 1 2 3 31 31 H 1.09006 * 109.47120 * 150.03997 * 1 2 3 32 32 H 1.08994 * 109.35899 * 329.16568 * 3 2 1 33 33 H 1.08996 * 109.35660 * 88.81287 * 3 2 1 34 34 H 1.09005 * 110.50690 * 196.14613 * 4 3 2 35 35 H 1.08999 * 110.44643 * 73.54518 * 4 3 2 36 36 H 1.09004 * 110.31476 * 63.12033 * 10 9 7 37 37 H 1.08998 * 110.32160 * 300.93180 * 10 9 7 38 38 H 1.08999 * 112.36299 * 64.27494 * 13 11 10 39 39 H 1.09003 * 112.36665 * 191.71497 * 13 11 10 40 40 H 1.08996 * 110.41595 * 170.14664 * 16 14 9 41 41 H 1.08999 * 110.20202 * 47.96498 * 16 14 9 42 42 H 0.96999 * 119.99656 * 5.06100 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3357 1.1853 0.0000 4 6 3.6701 0.8633 -0.7007 5 6 4.0863 -0.5178 -0.1172 6 1 4.5441 -0.4079 0.8659 7 6 5.0025 -1.2534 -1.0609 8 8 4.9528 -1.0298 -2.2519 9 7 5.8772 -2.1598 -0.5814 10 6 6.0675 -2.5499 0.8320 11 6 7.2329 -3.5870 0.8143 12 1 7.7549 -3.7419 1.7585 13 6 8.0726 -3.0172 -0.3848 14 6 6.8496 -2.9729 -1.3701 15 1 7.0426 -2.6361 -2.3887 16 6 6.3414 -4.4396 -1.2151 17 7 6.6295 -4.8010 0.1895 18 6 6.3953 -6.0074 0.7935 19 1 6.8070 -6.2108 1.7711 20 6 5.6288 -6.9689 0.1495 21 7 5.6158 -8.2073 0.5953 22 14 4.6157 -6.5053 -1.3498 23 1 5.5229 -6.1146 -2.4587 24 1 3.7262 -5.3650 -1.0129 25 1 3.7926 -7.6678 -1.7699 26 16 2.4537 -1.3459 0.0006 27 8 2.1392 -2.0378 -1.2001 28 8 2.2693 -1.9411 1.2778 29 1 -0.3633 0.0008 1.0276 30 1 -0.3634 0.8896 -0.5146 31 1 -0.3634 -0.8904 -0.5132 32 1 1.8379 1.9992 -0.5271 33 1 2.5324 1.4890 1.0281 34 1 4.4186 1.6191 -0.4624 35 1 3.5270 0.7941 -1.7790 36 1 5.1592 -3.0080 1.2238 37 1 6.3428 -1.6815 1.4306 38 1 8.4736 -2.0253 -0.1760 39 1 8.8466 -3.7098 -0.7154 40 1 6.8785 -5.1018 -1.8940 41 1 5.2694 -4.4887 -1.4062 42 1 6.0824 -8.4324 1.4153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032676643.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:31 Heat of formation + Delta-G solvation = -12.025112 kcal Electronic energy + Delta-G solvation = -28216.982512 eV Core-core repulsion = 24327.385717 eV Total energy + Delta-G solvation = -3889.596795 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.59393 -38.68311 -37.24224 -37.12214 -35.99879 -33.97884 -33.31254 -31.91218 -29.57962 -29.46068 -27.87899 -25.81680 -25.32915 -23.44565 -22.68315 -21.31926 -20.02682 -19.44765 -18.70031 -18.00368 -17.46700 -17.21809 -16.84967 -16.24247 -15.84122 -15.41663 -15.09964 -14.86636 -14.63174 -14.09480 -13.78197 -13.52485 -13.51184 -13.22792 -13.11742 -12.67030 -12.54144 -12.41285 -12.15789 -12.09847 -12.05838 -11.92670 -11.73710 -11.39226 -11.33917 -11.05468 -10.98887 -10.84366 -10.75659 -10.30134 -9.96092 -9.45742 -9.33906 -9.10994 -8.79712 -8.40369 -7.17278 -6.32088 -3.28943 -0.14673 2.24607 2.55721 2.75525 3.41178 3.42932 3.51963 3.58148 3.70481 4.00502 4.12912 4.41172 4.57815 4.57914 4.59634 4.76581 4.83875 4.89336 4.94542 5.15932 5.17901 5.22153 5.30551 5.33817 5.45243 5.46525 5.53017 5.58157 5.63449 5.80750 5.83094 6.05706 6.07104 6.21275 6.29808 6.32280 6.42374 6.57095 7.41992 7.56620 8.01771 8.25223 8.96357 9.46175 10.14334 11.16703 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.005311 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.393829 B = 5270.563862 C = 6096.238149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.999 5.999 3 C 0.081 3.919 4 C -0.108 4.108 5 C -0.596 4.596 6 H 0.164 0.836 7 C 0.554 3.446 8 O -0.522 6.522 9 N -0.608 5.608 10 C 0.062 3.938 11 C 0.148 3.852 12 H 0.117 0.883 13 C -0.147 4.147 14 C 0.119 3.881 15 H 0.127 0.873 16 C 0.092 3.908 17 N -0.606 5.606 18 C -0.325 4.325 19 H 0.083 0.917 20 C -0.016 4.016 21 N -0.925 5.925 22 Si 1.061 2.939 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.296 1.296 26 S 2.584 3.416 27 O -0.930 6.930 28 O -0.937 6.937 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 23.129 0.361 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.842 5.842 3 C -0.045 4.045 4 C -0.148 4.148 5 C -0.707 4.707 6 H 0.182 0.818 7 C 0.339 3.661 8 O -0.399 6.399 9 N -0.342 5.342 10 C -0.063 4.063 11 C 0.039 3.961 12 H 0.135 0.865 13 C -0.186 4.186 14 C 0.017 3.983 15 H 0.145 0.855 16 C -0.033 4.033 17 N -0.332 5.332 18 C -0.451 4.451 19 H 0.101 0.899 20 C -0.216 4.216 21 N -0.566 5.566 22 Si 0.895 3.105 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.224 1.224 26 S 2.676 3.324 27 O -0.919 6.919 28 O -0.926 6.926 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.408 21.548 -1.364 22.037 hybrid contribution 1.173 1.369 1.417 2.293 sum -3.234 22.917 0.053 23.145 Atomic orbital electron populations 1.21269 0.75643 1.03269 1.01739 1.57214 1.13920 1.21301 1.91812 1.22114 0.89764 0.90734 1.01882 1.22697 0.96346 0.92779 1.02946 1.30942 1.20150 1.10637 1.08950 0.81806 1.18419 0.80664 0.79447 0.87588 1.90714 1.68780 1.65263 1.15117 1.49230 1.36247 1.38490 1.10205 1.23623 1.02970 0.98956 0.80715 1.23220 0.90920 0.85734 0.96193 0.86549 1.24201 0.96384 1.01030 0.97029 1.24069 0.87976 0.89967 0.96308 0.85514 1.22924 0.98761 0.92928 0.88712 1.45614 1.72960 1.09507 1.05084 1.20160 1.31008 0.89511 1.04467 0.89918 1.25728 0.98406 0.93072 1.04438 1.70928 1.46516 1.16195 1.22997 0.83948 0.76690 0.73848 0.76047 1.21148 1.22318 1.22369 1.06375 0.76817 0.73635 0.75612 1.93657 1.80618 1.70165 1.47428 1.93645 1.83274 1.73797 1.41882 0.92413 0.90705 0.91020 0.88486 0.90517 0.86705 0.87185 0.90443 0.91500 0.90694 0.88995 0.91916 0.94139 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.11 11.38 59.85 0.68 1.79 16 2 N -1.00 -11.27 3.72 -120.68 -0.45 -11.72 16 3 C 0.08 0.60 6.82 -3.15 -0.02 0.58 16 4 C -0.11 -0.96 6.14 -24.76 -0.15 -1.11 16 5 C -0.60 -7.64 3.31 -26.50 -0.09 -7.73 16 6 H 0.16 1.57 7.29 -51.93 -0.38 1.19 16 7 C 0.55 9.42 6.88 -10.98 -0.08 9.34 16 8 O -0.52 -10.07 16.24 5.55 0.09 -9.98 16 9 N -0.61 -10.59 2.96 -156.78 -0.46 -11.05 16 10 C 0.06 1.02 5.68 -1.68 -0.01 1.01 16 11 C 0.15 2.60 5.52 -62.56 -0.35 2.25 16 12 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 13 C -0.15 -2.18 6.81 -22.28 -0.15 -2.33 16 14 C 0.12 2.08 5.24 -62.55 -0.33 1.75 16 15 H 0.13 2.02 8.05 -51.93 -0.42 1.60 16 16 C 0.09 2.05 3.99 -1.69 -0.01 2.04 16 17 N -0.61 -14.20 2.94 -156.37 -0.46 -14.66 16 18 C -0.32 -9.05 10.67 -15.06 -0.16 -9.21 16 19 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -29.26 13.70 55.49 0.76 -28.50 16 22 Si 1.06 28.61 24.59 -169.99 -4.18 24.43 16 23 H -0.28 -6.99 5.49 56.52 0.31 -6.68 16 24 H -0.29 -8.10 6.76 56.52 0.38 -7.72 16 25 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 26 S 2.58 41.78 5.83 -107.50 -0.63 41.15 16 27 O -0.93 -19.04 17.75 -57.41 -1.02 -20.06 16 28 O -0.94 -17.52 18.14 -57.41 -1.04 -18.57 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.11 1.14 7.28 -51.93 -0.38 0.76 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.07 0.80 7.90 -51.93 -0.41 0.39 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.41 6.72 -51.93 -0.35 1.07 16 41 H 0.04 1.02 4.15 -51.93 -0.22 0.81 16 42 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -38.99 342.77 -9.04 -48.03 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -6.06 Total: -2.07 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.75 Total: -2.19 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -0.61 Total: -65.92 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.97 Total: -48.60 kcal Atomic # 14 Polarization: 28.61 SS G_CDS: -4.18 Total: 24.43 kcal Atomic # 16 Polarization: 41.78 SS G_CDS: -0.63 Total: 41.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -38.99 -9.04 -48.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032676643.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.006 kcal (2) G-P(sol) polarization free energy of solvation -38.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds