Wall clock time and date at job start Tue Mar 31 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99881 * 2 1 4 4 H 1.48493 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46968 * 300.00005 * 3 2 1 6 6 H 1.48499 * 109.46907 * 59.99844 * 3 2 1 7 7 C 1.38810 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00167 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.47875 * 126.94396 * 0.02562 * 9 7 2 11 11 C 1.58431 * 104.83244 * 182.30327 * 10 9 7 12 12 H 1.08999 * 116.62481 * 159.52318 * 11 10 9 13 13 C 1.57431 * 99.62448 * 32.32428 * 11 10 9 14 14 C 1.49289 * 126.94612 * 180.02562 * 9 7 2 15 15 H 1.08994 * 116.15158 * 15.84741 * 14 9 7 16 16 C 1.56020 * 104.09285 * 246.69685 * 14 9 7 17 17 N 1.47863 * 105.10888 * 287.92307 * 16 14 9 18 18 C 1.34780 * 126.94863 * 181.97552 * 17 16 14 19 19 O 1.21644 * 120.00107 * 184.88881 * 18 17 16 20 20 C 1.47201 * 119.99604 * 4.89725 * 18 17 16 21 21 C 1.38844 * 120.90174 * 317.74153 * 20 18 17 22 22 C 1.39938 * 119.43171 * 179.97438 * 21 20 18 23 23 C 1.35020 * 121.26681 * 0.02562 * 22 21 20 24 24 N 1.36250 * 121.58348 * 0.02562 * 23 22 21 25 25 C 1.36374 * 133.87818 * 179.97438 * 24 23 22 26 26 O 1.35705 * 126.33310 * 0.02562 * 25 24 23 27 27 N 1.31101 * 107.33061 * 180.02562 * 25 24 23 28 28 N 1.28697 * 110.31350 * 0.02562 * 27 25 24 29 29 C 1.31482 * 109.66927 * 0.02562 * 28 27 25 30 30 H 0.96999 * 119.99827 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.31454 * 300.91109 * 10 9 7 32 32 H 1.08999 * 110.31388 * 62.99170 * 10 9 7 33 33 H 1.08996 * 112.53613 * 192.40819 * 13 11 10 34 34 H 1.09002 * 112.31367 * 64.86630 * 13 11 10 35 35 H 1.09001 * 110.31665 * 169.00956 * 16 14 9 36 36 H 1.09006 * 110.39787 * 46.87573 * 16 14 9 37 37 H 1.08003 * 120.28549 * 0.02796 * 21 20 18 38 38 H 1.07999 * 119.36751 * 180.28636 * 22 21 20 39 39 H 1.07995 * 119.20350 * 179.97438 * 23 22 21 40 40 H 0.96701 * 114.00013 * 89.99865 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1421 -2.5669 -0.0005 11 6 -0.3597 -4.1350 0.0610 12 1 -1.3326 -4.4798 0.4112 13 6 0.8994 -4.5421 0.9140 14 6 1.9104 -3.7617 -0.0005 15 1 2.9646 -3.8351 0.2666 16 6 1.5084 -4.3457 -1.3903 17 7 0.0555 -4.6030 -1.2946 18 6 -0.7354 -5.1451 -2.2418 19 8 -1.9363 -5.2189 -2.0623 20 6 -0.1459 -5.6479 -3.4934 21 6 0.8466 -4.9340 -4.1514 22 6 1.3859 -5.4410 -5.3390 23 6 0.9592 -6.6119 -5.8586 24 7 -0.0126 -7.3497 -5.2523 25 6 -0.6207 -8.5348 -5.5449 26 8 -0.3658 -9.3260 -6.6176 27 7 -1.4970 -8.7683 -4.5982 28 7 -1.4840 -7.8161 -3.7326 29 6 -0.5929 -6.9140 -4.0803 30 1 -0.4850 0.8400 0.0004 31 1 -0.5813 -2.0914 0.8765 32 1 -0.5739 -2.1519 -0.9113 33 1 1.0787 -5.6171 0.9073 34 1 0.8608 -4.1402 1.9265 35 1 2.0457 -5.2749 -1.5802 36 1 1.7135 -3.6227 -2.1800 37 1 1.2000 -3.9959 -3.7496 38 1 2.1611 -4.8872 -5.8475 39 1 1.3983 -6.9718 -6.7773 40 1 0.3242 -9.9860 -6.4645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032728587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:53 Heat of formation + Delta-G solvation = 121.247199 kcal Electronic energy + Delta-G solvation = -28146.963470 eV Core-core repulsion = 24159.994596 eV Total energy + Delta-G solvation = -3986.968874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.71406 -40.19032 -38.51898 -37.96762 -37.62593 -34.11516 -33.52558 -31.69952 -31.18406 -29.48182 -28.70525 -28.56194 -25.59814 -25.07683 -23.69332 -23.59717 -22.88808 -21.10871 -20.01062 -19.57891 -18.59816 -18.43376 -17.56529 -17.34502 -16.81072 -16.12951 -15.82697 -15.69498 -15.28874 -14.93873 -14.46633 -14.05595 -13.68760 -13.42740 -13.10349 -12.96550 -12.83895 -12.46262 -12.23837 -12.03360 -11.87445 -11.70060 -11.38012 -11.29907 -11.01963 -10.91889 -10.78602 -10.66914 -10.64132 -10.29052 -10.12202 -9.85685 -9.71471 -9.66309 -8.78537 -8.37139 -8.06621 -7.00693 -5.83650 -3.18888 0.04405 0.73800 1.55220 2.28983 2.63561 3.06101 3.32023 3.34663 3.36048 3.37167 3.40785 3.77244 4.03138 4.34832 4.36227 4.46241 4.58222 4.96751 5.09020 5.13807 5.19456 5.29186 5.40153 5.47875 5.53458 5.54983 5.63050 5.66377 5.81872 5.85574 6.06560 6.21159 6.22909 6.34150 6.41450 6.50743 6.60545 6.89624 7.36315 7.42458 7.66223 7.92442 8.02875 8.26113 8.42682 9.03126 9.63943 10.32753 11.28196 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.021498 B = 0.003271 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.164404 B = 8557.528408 C = 9125.915617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.082 0.918 9 N -0.598 5.598 10 C 0.175 3.825 11 C 0.099 3.901 12 H 0.118 0.882 13 C -0.151 4.151 14 C 0.142 3.858 15 H 0.107 0.893 16 C 0.078 3.922 17 N -0.599 5.599 18 C 0.578 3.422 19 O -0.520 6.520 20 C -0.069 4.069 21 C -0.053 4.053 22 C -0.133 4.133 23 C 0.075 3.925 24 N -0.404 5.404 25 C 0.309 3.691 26 O -0.427 6.427 27 N -0.239 5.239 28 N -0.251 5.251 29 C 0.235 3.765 30 H 0.254 0.746 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.246 -13.970 -10.560 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.050 3.950 11 C -0.003 4.003 12 H 0.136 0.864 13 C -0.191 4.191 14 C 0.033 3.967 15 H 0.124 0.876 16 C -0.047 4.047 17 N -0.332 5.332 18 C 0.364 3.636 19 O -0.397 6.397 20 C -0.076 4.076 21 C -0.077 4.077 22 C -0.154 4.154 23 C -0.047 4.047 24 N -0.097 5.097 25 C 0.009 3.991 26 O -0.226 6.226 27 N -0.089 5.089 28 N -0.097 5.097 29 C -0.017 4.017 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.182 0.818 38 H 0.182 0.818 39 H 0.189 0.811 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 5.894 -14.403 -10.171 18.591 hybrid contribution 1.880 1.210 -1.018 2.457 sum 7.774 -13.193 -11.190 18.966 Atomic orbital electron populations 1.69912 1.04938 1.25341 1.56170 1.24833 0.95680 0.97754 1.01928 0.86051 0.78647 0.83719 0.77307 1.20461 1.21778 1.21709 1.19074 0.90410 0.81946 1.44671 0.90051 1.45246 1.01425 0.99244 1.86252 1.22404 0.84551 0.86541 1.01479 1.24962 0.97898 0.97711 0.79719 0.86448 1.24204 0.96533 0.99044 0.99308 1.23147 0.96674 0.86276 0.90592 0.87555 1.23531 0.79974 0.98787 1.02427 1.49079 1.09660 1.59200 1.15270 1.16995 0.85992 0.78661 0.81922 1.90859 1.13603 1.56876 1.78355 1.20185 0.98235 0.91265 0.97882 1.22154 0.91900 0.99982 0.93638 1.20870 1.02324 0.95098 0.97118 1.21688 0.90593 0.93215 0.99179 1.44026 1.27444 1.18114 1.20082 1.21731 0.97419 0.85946 0.93958 1.85021 1.60876 1.47652 1.29062 1.74669 1.15946 1.19129 0.99144 1.74945 1.16346 0.99116 1.19259 1.22618 0.95852 0.97650 0.85532 0.93515 0.92451 0.93166 0.91417 0.89568 0.92689 0.90787 0.81785 0.81835 0.81127 0.74011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.70 10.56 55.49 0.59 -25.12 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 20.77 29.55 -169.99 -5.02 15.74 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.23 -5.83 10.37 -15.06 -0.16 -5.98 16 8 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.60 -13.40 3.03 -154.76 -0.47 -13.86 16 10 C 0.18 4.00 4.89 -0.29 0.00 4.00 16 11 C 0.10 1.84 5.34 -60.96 -0.33 1.52 16 12 H 0.12 2.16 8.07 -51.93 -0.42 1.74 16 13 C -0.15 -2.42 6.86 -22.10 -0.15 -2.57 16 14 C 0.14 2.41 5.47 -62.55 -0.34 2.07 16 15 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 16 C 0.08 1.18 4.92 -1.68 -0.01 1.18 16 17 N -0.60 -10.57 2.95 -156.39 -0.46 -11.03 16 18 C 0.58 10.86 7.54 -12.62 -0.10 10.76 16 19 O -0.52 -11.77 17.37 5.24 0.09 -11.67 16 20 C -0.07 -1.05 5.71 -102.69 -0.59 -1.64 16 21 C -0.05 -0.59 8.71 -38.72 -0.34 -0.93 16 22 C -0.13 -1.00 9.91 -40.09 -0.40 -1.40 16 23 C 0.08 0.59 10.93 -16.73 -0.18 0.41 16 24 N -0.40 -4.90 2.97 -62.52 -0.19 -5.09 16 25 C 0.31 3.89 9.41 -88.65 -0.83 3.06 16 26 O -0.43 -3.61 13.65 -18.82 -0.26 -3.87 16 27 N -0.24 -3.92 12.20 29.70 0.36 -3.55 16 28 N -0.25 -4.62 12.26 32.37 0.40 -4.22 16 29 C 0.24 3.75 7.85 -153.91 -1.21 2.55 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 32 H 0.05 1.32 7.67 -51.93 -0.40 0.92 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.14 6.05 -51.93 -0.31 0.83 16 37 H 0.16 1.81 5.60 -52.48 -0.29 1.52 16 38 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.40 1.07 9.06 45.56 0.41 1.48 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -35.98 337.99 -8.07 -44.05 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.48 Total: 0.74 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: -4.72 Total: 12.80 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.23 Total: -62.88 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.17 Total: -15.55 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.98 -8.07 -44.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032728587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.295 kcal (2) G-P(sol) polarization free energy of solvation -35.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds