Wall clock time and date at job start Tue Mar 31 2020 06:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48499 * 109.47029 * 239.99841 * 3 2 1 5 5 H 1.48497 * 109.47052 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47122 * 120.00295 * 3 2 1 7 7 C 1.38812 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00280 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.47059 * 136.06114 * 0.04693 * 9 7 2 11 11 C 1.53499 * 87.98967 * 207.08365 * 10 9 7 12 12 C 1.47070 * 136.05131 * 179.97438 * 9 7 2 13 13 H 1.09008 * 113.46685 * 267.74795 * 12 9 7 14 14 C 1.52996 * 113.47176 * 38.13558 * 12 9 7 15 15 N 1.46499 * 109.47193 * 285.49351 * 14 12 9 16 16 C 1.34772 * 120.00219 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99815 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00329 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.25579 * 60.32882 * 18 16 15 20 20 C 1.52664 * 109.36395 * 300.65638 * 18 16 15 21 21 N 1.46124 * 110.98312 * 290.34144 * 20 18 16 22 22 C 1.34669 * 121.06674 * 319.89098 * 21 20 18 23 23 O 1.21554 * 120.32980 * 187.87107 * 22 21 20 24 24 C 1.47815 * 119.33704 * 7.88580 * 22 21 20 25 25 C 1.39318 * 120.94451 * 193.02434 * 24 22 21 26 26 C 1.38060 * 119.60684 * 178.77628 * 25 24 22 27 27 C 1.38381 * 120.17453 * 0.51278 * 26 25 24 28 28 C 1.38422 * 120.41511 * 359.77311 * 27 26 25 29 29 C 1.37839 * 119.96089 * 0.24577 * 28 27 26 30 30 H 0.97000 * 120.00036 * 359.97438 * 1 2 3 31 31 H 1.09002 * 113.46721 * 321.86440 * 10 9 7 32 32 H 1.09000 * 113.47352 * 92.24951 * 10 9 7 33 33 H 1.08995 * 114.20964 * 220.34721 * 11 10 9 34 34 H 1.09004 * 114.20446 * 87.51179 * 11 10 9 35 35 H 1.08994 * 109.47473 * 165.48994 * 14 12 9 36 36 H 1.09003 * 109.46953 * 45.49501 * 14 12 9 37 37 H 0.97001 * 119.99961 * 359.97438 * 15 14 12 38 38 H 1.08994 * 109.17223 * 169.95836 * 20 18 16 39 39 H 1.08999 * 109.13173 * 50.70231 * 20 18 16 40 40 H 0.96998 * 119.46631 * 139.91057 * 21 20 18 41 41 H 1.08001 * 120.19554 * 359.02873 * 25 24 22 42 42 H 1.08003 * 119.91683 * 180.26665 * 26 25 24 43 43 H 1.08002 * 119.79669 * 180.02562 * 27 26 25 44 44 H 1.07994 * 120.01979 * 180.27332 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.0876 -2.7948 -0.0008 11 6 0.3412 -4.0920 0.6990 12 6 1.6801 -3.8154 0.0005 13 1 1.7466 -4.2461 -0.9986 14 6 2.8982 -4.1407 0.8672 15 7 4.1154 -3.6902 0.1876 16 6 5.3180 -3.8726 0.7679 17 8 5.3927 -4.4103 1.8525 18 6 6.5701 -3.4097 0.0686 19 1 6.5165 -2.3324 -0.0888 20 6 6.6856 -4.1133 -1.2813 21 7 6.9785 -5.5343 -1.1073 22 6 7.8421 -5.9554 -0.1637 23 8 8.1854 -7.1207 -0.1220 24 6 8.3681 -4.9865 0.8208 25 6 9.4529 -5.3084 1.6336 26 6 9.9377 -4.3733 2.5261 27 6 9.3427 -3.1274 2.6199 28 6 8.2610 -2.8053 1.8186 29 6 7.7674 -3.7305 0.9239 30 1 -0.4850 0.8400 0.0004 31 1 -0.7230 -2.1588 0.6156 32 1 -0.4929 -2.9533 -1.0001 33 1 -0.1733 -4.9839 0.3414 34 1 0.3811 -4.0213 1.7860 35 1 2.9507 -5.2170 1.0308 36 1 2.8080 -3.6314 1.8266 37 1 4.0557 -3.2605 -0.6800 38 1 7.4861 -3.6509 -1.8586 39 1 5.7455 -4.0051 -1.8222 40 1 6.5440 -6.1847 -1.6809 41 1 9.9143 -6.2823 1.5631 42 1 10.7811 -4.6160 3.1556 43 1 9.7272 -2.4004 3.3199 44 1 7.8043 -1.8296 1.8940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038343721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:46 Heat of formation + Delta-G solvation = 15.655087 kcal Electronic energy + Delta-G solvation = -28255.623857 eV Core-core repulsion = 24367.616508 eV Total energy + Delta-G solvation = -3888.007348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18928 -39.28890 -38.32928 -38.05902 -36.08511 -34.17130 -32.41272 -32.26540 -31.19570 -29.75650 -28.10064 -27.44316 -24.71603 -24.12521 -23.54689 -22.58050 -21.67505 -20.72741 -19.58401 -19.06194 -17.69786 -17.43538 -17.26141 -16.54465 -15.94226 -15.86044 -15.32320 -15.20474 -14.92824 -14.55460 -14.49074 -14.12910 -13.87493 -13.76538 -13.57003 -13.16966 -13.02830 -12.79282 -12.49203 -12.37379 -11.89552 -11.66420 -11.56452 -11.23515 -11.18452 -11.05236 -10.84145 -10.65955 -10.10468 -10.09653 -9.91939 -9.79945 -9.40109 -9.29620 -9.08597 -8.90091 -8.87370 -8.66842 -6.98323 -5.84780 -3.17917 0.69617 1.17747 2.69293 2.77977 3.01478 3.30074 3.33136 3.35794 3.37688 3.78836 4.15235 4.33005 4.34904 4.40153 4.70068 4.80473 4.84786 5.01560 5.09150 5.14103 5.20064 5.31366 5.34907 5.35422 5.50299 5.61889 5.66864 5.81032 5.83646 6.03485 6.10549 6.20778 6.25631 6.27583 6.34064 6.53035 6.59213 6.63357 6.74014 6.78236 6.96063 7.14380 7.31960 7.49695 7.75285 7.88996 8.02468 8.42228 8.93828 9.61859 10.54955 11.32249 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.003591 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.767894 B = 7795.429666 C = 8877.940654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.161 4.161 12 C 0.128 3.872 13 H 0.048 0.952 14 C 0.123 3.877 15 N -0.710 5.710 16 C 0.516 3.484 17 O -0.534 6.534 18 C -0.096 4.096 19 H 0.129 0.871 20 C 0.122 3.878 21 N -0.725 5.725 22 C 0.571 3.429 23 O -0.538 6.538 24 C -0.125 4.125 25 C -0.059 4.059 26 C -0.130 4.130 27 C -0.090 4.090 28 C -0.112 4.112 29 C -0.022 4.022 30 H 0.254 0.746 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.402 0.598 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.407 0.593 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.013 -6.750 -1.524 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.020 3.980 13 H 0.065 0.935 14 C -0.002 4.002 15 N -0.361 5.361 16 C 0.301 3.699 17 O -0.411 6.411 18 C -0.118 4.118 19 H 0.147 0.853 20 C -0.003 4.003 21 N -0.378 5.378 22 C 0.359 3.641 23 O -0.415 6.415 24 C -0.128 4.128 25 C -0.078 4.078 26 C -0.148 4.148 27 C -0.109 4.109 28 C -0.130 4.130 29 C -0.023 4.023 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.244 0.756 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 15.329 -7.214 -0.601 16.952 hybrid contribution 0.043 1.159 -0.735 1.373 sum 15.372 -6.055 -1.335 16.576 Atomic orbital electron populations 1.69813 1.05010 1.25489 1.56037 1.24783 0.95630 0.97441 1.02419 0.86269 0.78593 0.83450 0.77841 1.21173 1.21522 1.21106 1.18762 0.89889 0.81351 1.44408 0.90314 1.45659 1.02607 0.98506 1.85915 1.22024 0.88695 0.90185 0.96498 1.23666 0.96879 0.99082 1.00413 1.22415 0.92011 0.87795 0.95780 0.93492 1.21822 0.82905 0.98202 0.97236 1.45918 1.05803 1.60949 1.23414 1.20073 0.84321 0.79527 0.86009 1.90723 1.86807 1.42738 1.20819 1.20732 0.92271 1.03634 0.95202 0.85337 1.21317 1.03229 0.80855 0.94884 1.45588 1.46116 1.08657 1.37420 1.18211 0.77932 0.87478 0.80469 1.90787 1.58786 1.18538 1.73418 1.19600 0.99366 0.94022 0.99831 1.21146 0.94095 0.99418 0.93147 1.21151 1.00776 0.93729 0.99181 1.21332 0.95100 0.96697 0.97722 1.20961 0.96841 0.99678 0.95559 1.19351 0.93913 0.92997 0.96044 0.93555 0.90991 0.95719 0.92330 0.90202 0.92336 0.91043 0.76343 0.89981 0.88512 0.75611 0.84761 0.85316 0.85409 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.01 11.51 55.49 0.64 -25.37 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 20.85 29.55 -169.99 -5.02 15.82 16 4 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.22 -5.47 10.55 -15.06 -0.16 -5.63 16 8 H 0.08 1.86 7.50 -52.49 -0.39 1.46 16 9 N -0.60 -13.85 3.65 -176.97 -0.65 -14.50 16 10 C 0.15 3.33 7.39 -8.51 -0.06 3.27 16 11 C -0.16 -2.83 8.03 -26.20 -0.21 -3.04 16 12 C 0.13 2.31 4.10 -72.38 -0.30 2.01 16 13 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 14 C 0.12 2.10 5.52 -4.04 -0.02 2.08 16 15 N -0.71 -10.78 5.15 -60.30 -0.31 -11.09 16 16 C 0.52 7.98 7.02 -10.99 -0.08 7.90 16 17 O -0.53 -10.46 16.03 5.55 0.09 -10.38 16 18 C -0.10 -1.11 2.73 -93.15 -0.25 -1.36 16 19 H 0.13 1.19 8.08 -51.93 -0.42 0.77 16 20 C 0.12 1.09 6.37 -4.42 -0.03 1.06 16 21 N -0.72 -8.05 5.43 -61.72 -0.34 -8.39 16 22 C 0.57 8.26 7.81 -12.39 -0.10 8.16 16 23 O -0.54 -9.31 17.37 5.32 0.09 -9.22 16 24 C -0.13 -1.71 5.80 -105.07 -0.61 -2.32 16 25 C -0.06 -0.73 9.63 -39.25 -0.38 -1.10 16 26 C -0.13 -1.32 10.04 -39.59 -0.40 -1.72 16 27 C -0.09 -0.91 10.04 -39.46 -0.40 -1.30 16 28 C -0.11 -1.29 9.72 -39.66 -0.39 -1.67 16 29 C -0.02 -0.28 4.17 -104.31 -0.43 -0.71 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.40 5.52 7.64 -40.82 -0.31 5.20 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.69 7.24 -51.93 -0.38 0.31 16 40 H 0.41 3.92 8.92 -40.82 -0.36 3.55 16 41 H 0.13 1.55 7.78 -52.49 -0.41 1.14 16 42 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -34.61 368.17 -9.86 -44.46 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.01 Total: 7.71 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -3.90 Total: 5.38 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.65 Total: -59.34 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.18 Total: -19.59 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.61 -9.86 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038343721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.118 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds