Wall clock time and date at job start Tue Mar 31 2020 06:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48499 * 109.47029 * 239.99841 * 3 2 1 5 5 H 1.48497 * 109.47052 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47122 * 120.00295 * 3 2 1 7 7 C 1.38812 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00280 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.47059 * 136.06114 * 0.04693 * 9 7 2 11 11 C 1.53499 * 87.98967 * 207.08365 * 10 9 7 12 12 C 1.47070 * 136.05131 * 179.97438 * 9 7 2 13 13 H 1.09008 * 113.46685 * 267.74795 * 12 9 7 14 14 C 1.52996 * 113.47176 * 38.13558 * 12 9 7 15 15 N 1.46499 * 109.47193 * 285.49351 * 14 12 9 16 16 C 1.34772 * 120.00219 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99815 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00329 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.25579 * 60.32882 * 18 16 15 20 20 C 1.52664 * 109.36395 * 300.65638 * 18 16 15 21 21 N 1.46124 * 110.98312 * 290.34144 * 20 18 16 22 22 C 1.34669 * 121.06674 * 319.89098 * 21 20 18 23 23 O 1.21554 * 120.32980 * 187.87107 * 22 21 20 24 24 C 1.47815 * 119.33704 * 7.88580 * 22 21 20 25 25 C 1.39318 * 120.94451 * 193.02434 * 24 22 21 26 26 C 1.38060 * 119.60684 * 178.77628 * 25 24 22 27 27 C 1.38381 * 120.17453 * 0.51278 * 26 25 24 28 28 C 1.38422 * 120.41511 * 359.77311 * 27 26 25 29 29 C 1.37839 * 119.96089 * 0.24577 * 28 27 26 30 30 H 0.97000 * 120.00036 * 359.97438 * 1 2 3 31 31 H 1.09002 * 113.46721 * 321.86440 * 10 9 7 32 32 H 1.09000 * 113.47352 * 92.24951 * 10 9 7 33 33 H 1.08995 * 114.20964 * 220.34721 * 11 10 9 34 34 H 1.09004 * 114.20446 * 87.51179 * 11 10 9 35 35 H 1.08994 * 109.47473 * 165.48994 * 14 12 9 36 36 H 1.09003 * 109.46953 * 45.49501 * 14 12 9 37 37 H 0.97001 * 119.99961 * 359.97438 * 15 14 12 38 38 H 1.08994 * 109.17223 * 169.95836 * 20 18 16 39 39 H 1.08999 * 109.13173 * 50.70231 * 20 18 16 40 40 H 0.96998 * 119.46631 * 139.91057 * 21 20 18 41 41 H 1.08001 * 120.19554 * 359.02873 * 25 24 22 42 42 H 1.08003 * 119.91683 * 180.26665 * 26 25 24 43 43 H 1.08002 * 119.79669 * 180.02562 * 27 26 25 44 44 H 1.07994 * 120.01979 * 180.27332 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.0876 -2.7948 -0.0008 11 6 0.3412 -4.0920 0.6990 12 6 1.6801 -3.8154 0.0005 13 1 1.7466 -4.2461 -0.9986 14 6 2.8982 -4.1407 0.8672 15 7 4.1154 -3.6902 0.1876 16 6 5.3180 -3.8726 0.7679 17 8 5.3927 -4.4103 1.8525 18 6 6.5701 -3.4097 0.0686 19 1 6.5165 -2.3324 -0.0888 20 6 6.6856 -4.1133 -1.2813 21 7 6.9785 -5.5343 -1.1073 22 6 7.8421 -5.9554 -0.1637 23 8 8.1854 -7.1207 -0.1220 24 6 8.3681 -4.9865 0.8208 25 6 9.4529 -5.3084 1.6336 26 6 9.9377 -4.3733 2.5261 27 6 9.3427 -3.1274 2.6199 28 6 8.2610 -2.8053 1.8186 29 6 7.7674 -3.7305 0.9239 30 1 -0.4850 0.8400 0.0004 31 1 -0.7230 -2.1588 0.6156 32 1 -0.4929 -2.9533 -1.0001 33 1 -0.1733 -4.9839 0.3414 34 1 0.3811 -4.0213 1.7860 35 1 2.9507 -5.2170 1.0308 36 1 2.8080 -3.6314 1.8266 37 1 4.0557 -3.2605 -0.6800 38 1 7.4861 -3.6509 -1.8586 39 1 5.7455 -4.0051 -1.8222 40 1 6.5440 -6.1847 -1.6809 41 1 9.9143 -6.2823 1.5631 42 1 10.7811 -4.6160 3.1556 43 1 9.7272 -2.4004 3.3199 44 1 7.8043 -1.8296 1.8940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038343721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:45 Heat of formation + Delta-G solvation = -9.310944 kcal Electronic energy + Delta-G solvation = -28256.706465 eV Core-core repulsion = 24367.616508 eV Total energy + Delta-G solvation = -3889.089957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16535 -40.57020 -39.70769 -39.12599 -37.07301 -35.52716 -34.19991 -33.30529 -32.05246 -30.74778 -29.89785 -28.79073 -25.62633 -25.36036 -25.00414 -23.86686 -22.80855 -21.85112 -21.06286 -20.27013 -18.75431 -18.53941 -18.36835 -17.93605 -17.14644 -17.11275 -16.73653 -16.27490 -15.99138 -15.86335 -15.55675 -15.45397 -15.33326 -14.90457 -14.70061 -14.49837 -14.18606 -13.71692 -13.55869 -13.37506 -13.32083 -13.13104 -12.90031 -12.66034 -12.57283 -12.50850 -12.32916 -12.06134 -11.81926 -11.62276 -11.24537 -11.13837 -10.85720 -10.77092 -10.30235 -10.00708 -9.94716 -9.76803 -8.86105 -7.82558 -5.14851 -0.20476 0.31965 1.48979 1.52086 1.57450 1.59414 1.74370 2.09476 2.24748 2.51745 2.85735 3.29514 3.39793 3.45147 3.46402 3.57789 3.79895 3.88306 3.97695 4.13204 4.17193 4.30578 4.32852 4.35741 4.44754 4.54105 4.62232 4.66825 4.70931 4.80795 4.89587 4.98566 5.06038 5.11408 5.27656 5.35580 5.37356 5.45106 5.45827 5.61693 5.75342 5.76584 5.92186 5.99742 6.01923 6.56157 6.96614 7.04744 7.23489 7.69092 8.68169 9.35133 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.003591 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.767894 B = 7795.429666 C = 8877.940654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.073 4.073 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.305 1.305 6 H -0.281 1.281 7 C -0.206 4.206 8 H 0.095 0.905 9 N -0.627 5.627 10 C 0.143 3.857 11 C -0.139 4.139 12 C 0.137 3.863 13 H 0.073 0.927 14 C 0.133 3.867 15 N -0.705 5.705 16 C 0.515 3.485 17 O -0.580 6.580 18 C -0.091 4.091 19 H 0.157 0.843 20 C 0.120 3.880 21 N -0.716 5.716 22 C 0.561 3.439 23 O -0.582 6.582 24 C -0.151 4.151 25 C -0.077 4.077 26 C -0.127 4.127 27 C -0.088 4.088 28 C -0.124 4.124 29 C -0.035 4.035 30 H 0.243 0.757 31 H 0.033 0.967 32 H 0.023 0.977 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.411 0.589 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.413 0.587 41 H 0.131 0.869 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.825 -6.437 -2.194 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.232 1.232 6 H -0.208 1.208 7 C -0.334 4.334 8 H 0.113 0.887 9 N -0.353 5.353 10 C 0.017 3.983 11 C -0.178 4.178 12 C 0.031 3.969 13 H 0.090 0.910 14 C 0.008 3.992 15 N -0.356 5.356 16 C 0.302 3.698 17 O -0.459 6.459 18 C -0.113 4.113 19 H 0.174 0.826 20 C -0.004 4.004 21 N -0.368 5.368 22 C 0.350 3.650 23 O -0.463 6.463 24 C -0.154 4.154 25 C -0.096 4.096 26 C -0.145 4.145 27 C -0.106 4.106 28 C -0.142 4.142 29 C -0.036 4.036 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.248 0.752 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.251 0.749 41 H 0.148 0.852 42 H 0.175 0.825 43 H 0.176 0.824 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 17.154 -6.904 -1.322 18.538 hybrid contribution -0.509 1.006 -0.473 1.223 sum 16.645 -5.898 -1.795 17.750 Atomic orbital electron populations 1.70020 1.06550 1.25217 1.58871 1.25573 0.96355 1.00714 1.03904 0.85289 0.77194 0.79359 0.78372 1.19343 1.23182 1.20786 1.19234 0.90803 0.82174 1.41238 0.88740 1.45967 1.03401 1.00017 1.85890 1.22017 0.88024 0.91936 0.96283 1.23505 0.96280 0.98164 0.99868 1.22526 0.92606 0.84831 0.96949 0.90977 1.21533 0.83525 0.98477 0.95683 1.45844 1.05304 1.60811 1.23618 1.20765 0.85271 0.78343 0.85448 1.90705 1.87486 1.44758 1.23001 1.20817 0.89479 1.05376 0.95610 0.82564 1.21612 1.05628 0.79279 0.93910 1.45610 1.44807 1.10003 1.36364 1.18520 0.78176 0.87148 0.81116 1.90748 1.60640 1.20155 1.74766 1.19750 1.00479 0.94560 1.00598 1.21340 0.94352 0.99995 0.93890 1.21498 1.01195 0.93267 0.98499 1.21740 0.94301 0.97125 0.97445 1.21289 0.97349 1.00152 0.95409 1.19514 0.94382 0.92872 0.96868 0.94763 0.94826 0.95901 0.88512 0.90617 0.91178 0.94199 0.75216 0.87029 0.86112 0.74893 0.85157 0.82462 0.82418 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.64 11.51 21.65 0.25 -55.39 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.97 42.67 29.55 68.60 2.03 44.70 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.21 -10.20 10.55 84.03 0.89 -9.32 16 8 H 0.09 4.24 7.50 -2.91 -0.02 4.21 16 9 N -0.63 -28.29 3.65 -713.81 -2.61 -30.89 16 10 C 0.14 6.28 7.39 83.18 0.61 6.90 16 11 C -0.14 -4.62 8.03 30.94 0.25 -4.37 16 12 C 0.14 4.64 4.10 41.80 0.17 4.81 16 13 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 14 C 0.13 4.32 5.52 86.38 0.48 4.80 16 15 N -0.71 -19.68 5.15 -463.07 -2.38 -22.07 16 16 C 0.52 14.95 7.02 87.66 0.62 15.57 16 17 O -0.58 -22.33 16.03 -3.06 -0.05 -22.38 16 18 C -0.09 -1.85 2.73 -12.43 -0.03 -1.88 16 19 H 0.16 2.27 8.08 -2.39 -0.02 2.25 16 20 C 0.12 1.75 6.37 86.34 0.55 2.30 16 21 N -0.72 -14.79 5.43 -467.53 -2.54 -17.33 16 22 C 0.56 16.15 7.81 86.79 0.68 16.83 16 23 O -0.58 -20.68 17.37 -3.88 -0.07 -20.75 16 24 C -0.15 -4.05 5.80 -20.15 -0.12 -4.16 16 25 C -0.08 -1.85 9.63 22.49 0.22 -1.64 16 26 C -0.13 -2.32 10.04 22.26 0.22 -2.10 16 27 C -0.09 -1.54 10.04 22.35 0.22 -1.31 16 28 C -0.12 -2.55 9.72 22.22 0.22 -2.33 16 29 C -0.04 -0.83 4.17 -19.66 -0.08 -0.91 16 30 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.03 1.72 7.12 -2.39 -0.02 1.70 16 32 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.08 2.59 8.12 -2.38 -0.02 2.57 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 9.91 7.64 -92.71 -0.71 9.21 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.12 1.21 7.24 -2.39 -0.02 1.19 16 40 H 0.41 7.35 8.92 -92.71 -0.83 6.52 16 41 H 0.13 3.11 7.78 -2.91 -0.02 3.08 16 42 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -78.42 368.17 -0.50 -78.92 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.49 Total: 25.44 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 5.36 Total: 19.75 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -7.28 Total: -125.69 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.12 Total: -43.13 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -78.42 -0.50 -78.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038343721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.613 kcal (2) G-P(sol) polarization free energy of solvation -78.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds