Wall clock time and date at job start Tue Mar 31 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00392 * 2 1 4 4 H 1.48495 * 109.47198 * 240.00518 * 3 2 1 5 5 H 1.48500 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46848 * 120.00109 * 3 2 1 7 7 C 1.38819 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99603 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00320 * 359.97438 * 7 2 1 10 10 C 1.47810 * 134.58000 * 0.04918 * 9 7 2 11 11 C 1.53942 * 86.15823 * 155.42417 * 10 9 7 12 12 C 1.47575 * 134.49551 * 180.02562 * 9 7 2 13 13 H 1.08996 * 113.77057 * 90.21316 * 12 9 7 14 14 C 1.53000 * 113.76753 * 318.92817 * 12 9 7 15 15 N 1.46502 * 109.47257 * 76.34664 * 14 12 9 16 16 C 1.34768 * 120.00602 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99460 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00714 * 179.97438 * 16 15 14 19 19 H 1.09000 * 109.35823 * 60.26362 * 18 16 15 20 20 C 1.52664 * 109.25525 * 300.59504 * 18 16 15 21 21 N 1.46125 * 110.93408 * 290.51631 * 20 18 16 22 22 C 1.34662 * 121.01913 * 319.84572 * 21 20 18 23 23 O 1.21557 * 120.31674 * 187.55326 * 22 21 20 24 24 C 1.47819 * 119.37482 * 7.53223 * 22 21 20 25 25 C 1.39234 * 121.08297 * 192.77985 * 24 22 21 26 26 C 1.38065 * 119.66592 * 179.85090 * 25 24 22 27 27 C 1.38381 * 120.14353 * 359.97438 * 26 25 24 28 28 C 1.38405 * 120.40930 * 0.38636 * 27 26 25 29 29 C 1.37835 * 119.99276 * 0.02562 * 28 27 26 30 30 H 0.97005 * 119.99928 * 359.97438 * 1 2 3 31 31 H 1.08997 * 113.83824 * 41.09666 * 10 9 7 32 32 H 1.09008 * 113.76950 * 269.74456 * 10 9 7 33 33 H 1.08998 * 113.74417 * 269.16802 * 11 10 9 34 34 H 1.09007 * 113.74085 * 137.85961 * 11 10 9 35 35 H 1.09002 * 109.47181 * 316.34904 * 14 12 9 36 36 H 1.09000 * 109.47268 * 196.34335 * 14 12 9 37 37 H 0.97004 * 119.99674 * 359.97438 * 15 14 12 38 38 H 1.09005 * 109.18276 * 50.89284 * 20 18 16 39 39 H 1.08999 * 109.18083 * 170.13987 * 20 18 16 40 40 H 0.96999 * 119.49427 * 139.86998 * 21 20 18 41 41 H 1.08001 * 120.17123 * 359.83233 * 25 24 22 42 42 H 1.07998 * 119.92464 * 179.70143 * 26 25 24 43 43 H 1.08007 * 119.79670 * 180.36026 * 27 26 25 44 44 H 1.08005 * 120.00650 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1051 -2.7602 -0.0010 11 6 0.3466 -4.0862 -0.6393 12 6 1.7199 -3.8102 -0.0005 13 1 1.8338 -4.2345 0.9969 14 6 2.9019 -4.1222 -0.9205 15 7 4.1447 -3.6721 -0.2886 16 6 5.3226 -3.8438 -0.9204 17 8 5.3539 -4.3715 -2.0121 18 6 6.6009 -3.3803 -0.2707 19 1 6.7345 -3.9022 0.6768 20 6 6.5190 -1.8776 -0.0139 21 7 6.5568 -1.1306 -1.2692 22 6 7.3763 -1.4996 -2.2720 23 8 7.4996 -0.7947 -3.2546 24 6 8.1251 -2.7697 -2.1663 25 6 9.1694 -3.0633 -3.0392 26 6 9.8510 -4.2572 -2.9121 27 6 9.4981 -5.1569 -1.9218 28 6 8.4559 -4.8731 -1.0564 29 6 7.7622 -3.6882 -1.1785 30 1 -0.4850 0.8401 0.0004 31 1 -0.7203 -2.1441 -0.6567 32 1 -0.5295 -2.8749 0.9965 33 1 0.3575 -4.0674 -1.7291 34 1 -0.1579 -4.9630 -0.2332 35 1 2.7694 -3.6048 -1.8707 36 1 2.9521 -5.1969 -1.0959 37 1 4.1196 -3.2498 0.5843 38 1 5.5889 -1.6537 0.5085 39 1 7.3606 -1.5744 0.6089 40 1 5.9829 -0.3567 -1.3818 41 1 9.4447 -2.3608 -3.8119 42 1 10.6586 -4.4913 -3.5900 43 1 10.0389 -6.0867 -1.8238 44 1 8.1862 -5.5798 -0.2855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038343725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:59 Heat of formation + Delta-G solvation = 12.353489 kcal Electronic energy + Delta-G solvation = -28595.849684 eV Core-core repulsion = 24707.699167 eV Total energy + Delta-G solvation = -3888.150517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.12129 -39.21707 -38.20625 -37.90348 -35.97166 -34.16554 -32.33851 -32.22259 -31.15788 -29.71522 -28.02839 -27.46097 -24.63866 -24.05214 -23.43381 -22.65825 -21.71638 -20.68286 -19.51666 -18.94833 -17.62550 -17.29036 -17.23823 -16.55421 -15.92008 -15.74183 -15.25146 -15.19052 -14.90444 -14.47752 -14.46599 -14.15361 -13.78991 -13.74774 -13.37755 -13.32498 -13.00729 -12.71131 -12.41582 -12.34609 -11.91018 -11.58459 -11.48317 -11.22088 -11.16195 -11.06657 -10.79487 -10.63325 -10.10699 -9.95612 -9.83915 -9.77070 -9.46104 -9.21222 -9.06750 -8.86760 -8.84981 -8.67527 -6.96259 -5.82964 -3.15656 0.74153 1.18472 2.75277 2.81128 3.19021 3.30730 3.35201 3.37736 3.40084 3.82079 4.19508 4.35649 4.41349 4.46025 4.71229 4.81955 4.86813 5.06006 5.07827 5.13863 5.22354 5.33341 5.37521 5.43074 5.56034 5.62518 5.66918 5.80924 5.84788 6.01840 6.14280 6.21627 6.25890 6.27157 6.34766 6.55865 6.64025 6.68815 6.78577 6.84787 7.16270 7.17287 7.34489 7.51801 7.74915 7.90691 8.19797 8.42070 8.95896 9.64136 10.53085 11.33745 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.004130 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.974504 B = 6778.396194 C = 8169.903182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.050 0.950 14 C 0.124 3.876 15 N -0.711 5.711 16 C 0.516 3.484 17 O -0.534 6.534 18 C -0.093 4.093 19 H 0.125 0.875 20 C 0.119 3.881 21 N -0.721 5.721 22 C 0.568 3.432 23 O -0.536 6.536 24 C -0.120 4.120 25 C -0.059 4.059 26 C -0.130 4.130 27 C -0.093 4.093 28 C -0.114 4.114 29 C -0.024 4.024 30 H 0.254 0.746 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.402 0.598 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.412 0.588 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.520 -10.802 3.019 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.019 3.981 13 H 0.067 0.933 14 C 0.000 4.000 15 N -0.361 5.361 16 C 0.300 3.700 17 O -0.411 6.411 18 C -0.115 4.115 19 H 0.143 0.857 20 C -0.006 4.006 21 N -0.375 5.375 22 C 0.355 3.645 23 O -0.414 6.414 24 C -0.123 4.123 25 C -0.078 4.078 26 C -0.148 4.148 27 C -0.112 4.112 28 C -0.132 4.132 29 C -0.025 4.025 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.236 0.764 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.249 0.751 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.700 -10.601 1.740 19.024 hybrid contribution 0.056 1.384 0.645 1.528 sum 15.756 -9.217 2.386 18.409 Atomic orbital electron populations 1.69794 1.04986 1.25438 1.56188 1.24753 0.95605 0.97360 1.02471 0.86352 0.78795 0.83699 0.77847 1.20958 1.21499 1.21180 1.18795 0.89870 0.81892 1.44237 0.90643 1.46070 1.02266 0.98477 1.86052 1.22227 0.87907 0.89556 0.96910 1.23768 0.96148 0.99000 1.00595 1.22499 0.92316 0.87728 0.95586 0.93308 1.21774 0.82294 0.98245 0.97684 1.45917 1.06186 1.61406 1.22612 1.20102 0.84576 0.79449 0.85871 1.90723 1.86950 1.43298 1.20083 1.20708 0.92405 0.98037 1.00397 0.85678 1.21348 1.04510 0.88471 0.86287 1.45609 1.43270 1.33130 1.15472 1.18199 0.78820 0.85138 0.82299 1.90794 1.64874 1.54517 1.31180 1.19661 0.99110 0.95321 0.98203 1.21145 0.93200 0.96770 0.96649 1.21146 1.00607 0.94072 0.98944 1.21289 0.96386 0.99019 0.94478 1.20872 0.96196 0.95833 1.00284 1.19376 0.94206 0.94352 0.94560 0.93567 0.90881 0.95515 0.90528 0.92775 0.91061 0.92189 0.76371 0.88162 0.90088 0.75063 0.84732 0.85338 0.85521 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 11.40 55.49 0.63 -25.52 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.22 -5.55 10.51 -15.06 -0.16 -5.71 16 8 H 0.08 1.76 7.49 -52.49 -0.39 1.36 16 9 N -0.60 -13.88 3.59 -169.75 -0.61 -14.48 16 10 C 0.16 3.51 7.52 -2.85 -0.02 3.49 16 11 C -0.16 -2.74 7.86 -25.79 -0.20 -2.94 16 12 C 0.13 2.27 4.33 -66.86 -0.29 1.98 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 C 0.12 2.13 5.54 -4.04 -0.02 2.10 16 15 N -0.71 -10.72 5.16 -60.29 -0.31 -11.04 16 16 C 0.52 7.95 7.01 -10.99 -0.08 7.87 16 17 O -0.53 -10.45 16.03 5.55 0.09 -10.36 16 18 C -0.09 -1.07 2.73 -93.15 -0.25 -1.32 16 19 H 0.13 0.95 8.08 -51.93 -0.42 0.53 16 20 C 0.12 1.31 6.36 -4.42 -0.03 1.29 16 21 N -0.72 -10.54 5.43 -61.72 -0.33 -10.87 16 22 C 0.57 9.57 7.81 -12.39 -0.10 9.48 16 23 O -0.54 -10.76 17.37 5.32 0.09 -10.66 16 24 C -0.12 -1.76 5.80 -105.07 -0.61 -2.37 16 25 C -0.06 -0.76 9.63 -39.28 -0.38 -1.14 16 26 C -0.13 -1.32 10.04 -39.59 -0.40 -1.72 16 27 C -0.09 -0.89 10.04 -39.47 -0.40 -1.29 16 28 C -0.11 -1.20 9.72 -39.67 -0.39 -1.59 16 29 C -0.02 -0.30 4.17 -104.29 -0.44 -0.74 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.07 1.82 7.17 -51.93 -0.37 1.45 16 32 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 5.46 7.61 -40.82 -0.31 5.15 16 38 H 0.10 1.05 7.24 -51.93 -0.38 0.67 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.41 6.18 8.92 -40.82 -0.36 5.82 16 41 H 0.13 1.69 7.79 -52.49 -0.41 1.28 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -34.83 368.14 -9.77 -44.60 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.01 Total: 9.59 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -3.85 Total: 7.18 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.62 Total: -61.91 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.18 Total: -21.02 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.83 -9.77 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038343725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.950 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds